Wall clock time and date at job start Tue Mar 31 2020 04:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33322 * 126.10339 * 2 1 4 4 C 1.30858 * 109.68061 * 180.28023 * 3 2 1 5 5 N 1.34491 * 109.16512 * 359.75949 * 4 3 2 6 6 H 0.96998 * 126.47308 * 179.97438 * 5 4 3 7 7 C 1.36660 * 126.10937 * 179.88139 * 2 1 3 8 8 C 1.46758 * 126.84481 * 359.97438 * 7 2 1 9 9 O 1.21687 * 119.99989 * 359.70570 * 8 7 2 10 10 N 1.34777 * 120.00614 * 179.70710 * 8 7 2 11 11 C 1.46493 * 120.00667 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.45807 * 299.97819 * 11 10 8 13 13 C 1.53041 * 109.46410 * 180.02562 * 11 10 8 14 14 C 1.53193 * 109.31105 * 301.34605 * 13 11 10 15 15 N 1.46928 * 108.77520 * 305.36495 * 14 13 11 16 16 C 1.36940 * 120.62959 * 233.58553 * 15 14 13 17 17 H 1.07992 * 119.99796 * 152.32566 * 16 15 14 18 18 C 1.38808 * 119.99786 * 332.32286 * 16 15 14 19 19 N 1.31614 * 120.00335 * 342.64662 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 162.64095 * 18 16 15 21 21 H 1.48499 * 109.47184 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47205 * 300.00434 * 20 18 16 23 23 H 1.48499 * 109.46877 * 60.00347 * 20 18 16 24 24 C 1.46923 * 118.74171 * 53.85993 * 15 14 13 25 25 C 1.53038 * 109.46048 * 59.93211 * 11 10 8 26 26 H 1.08996 * 109.46700 * 270.11842 * 1 2 3 27 27 H 1.09006 * 109.47153 * 30.11569 * 1 2 3 28 28 H 1.08995 * 109.47208 * 150.12276 * 1 2 3 29 29 H 1.08010 * 125.41702 * 179.74569 * 4 3 2 30 30 H 0.97002 * 119.99343 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47027 * 300.01962 * 12 11 10 32 32 H 1.08995 * 109.47550 * 60.02659 * 12 11 10 33 33 H 1.09005 * 109.47129 * 180.02562 * 12 11 10 34 34 H 1.08999 * 109.49799 * 181.39591 * 13 11 10 35 35 H 1.09000 * 109.52082 * 61.31128 * 13 11 10 36 36 H 1.08999 * 109.58803 * 185.57393 * 14 13 11 37 37 H 1.09003 * 109.70237 * 65.22112 * 14 13 11 38 38 H 0.97006 * 120.00347 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.59145 * 65.92479 * 24 15 14 40 40 H 1.08998 * 109.59312 * 186.35605 * 24 15 14 41 41 H 1.08994 * 109.50474 * 178.61000 * 25 11 10 42 42 H 1.09007 * 109.49914 * 298.67394 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0060 5 7 3.6122 -0.6361 -0.0048 6 1 4.4188 -1.1748 -0.0087 7 6 2.3124 -1.1041 0.0023 8 6 1.8822 -2.5072 0.0057 9 8 0.6963 -2.7799 0.0122 10 7 2.8005 -3.4937 0.0017 11 6 2.3711 -4.8943 0.0057 12 6 1.5395 -5.1688 1.2603 13 6 3.6011 -5.8048 0.0005 14 6 4.4494 -5.5033 -1.2390 15 7 3.6023 -5.6266 -2.4331 16 6 3.9745 -6.4377 -3.4718 17 1 3.2221 -6.8800 -4.1078 18 6 5.3188 -6.6912 -3.7071 19 7 6.2379 -5.9118 -3.1781 20 14 5.8233 -8.1388 -4.7747 21 1 7.3043 -8.1917 -4.8692 22 1 5.3210 -9.3986 -4.1699 23 1 5.2455 -7.9771 -6.1331 24 6 2.3514 -4.8584 -2.4944 25 6 1.5235 -5.1712 -1.2380 26 1 -0.3632 0.0021 1.0277 27 1 -0.3634 0.8890 -0.5157 28 1 -0.3633 -0.8910 -0.5119 29 1 4.3970 1.3746 -0.0114 30 1 3.7458 -3.2763 -0.0030 31 1 2.1425 -4.9707 2.1465 32 1 0.6633 -4.5205 1.2646 33 1 1.2202 -6.2111 1.2637 34 1 3.2823 -6.8469 -0.0215 35 1 4.1919 -5.6240 0.8985 36 1 5.2729 -6.2147 -1.3000 37 1 4.8460 -4.4900 -1.1753 38 1 7.1774 -6.0888 -3.3429 39 1 2.5782 -3.7928 -2.5296 40 1 1.7902 -5.1442 -3.3839 41 1 1.2241 -6.2192 -1.2485 42 1 0.6353 -4.5394 -1.2212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045652690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:54 Heat of formation + Delta-G solvation = 38.701012 kcal Electronic energy + Delta-G solvation = -24584.232250 eV Core-core repulsion = 21179.621331 eV Total energy + Delta-G solvation = -3404.610919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22290 -39.91111 -37.31700 -34.55624 -33.39470 -32.06562 -31.23688 -30.51325 -29.93994 -27.46977 -27.11485 -24.18302 -23.26876 -22.37074 -21.71655 -20.70148 -19.70783 -18.78020 -18.67360 -16.90746 -16.11400 -15.63344 -15.08553 -14.89946 -14.48332 -14.30506 -13.99168 -13.81245 -13.47900 -13.19804 -13.13680 -12.91510 -12.73718 -12.44401 -12.11495 -11.82182 -11.70066 -11.38196 -11.27006 -10.99052 -10.75907 -10.47969 -10.40628 -10.30874 -10.04180 -9.93502 -9.84968 -9.70269 -9.24056 -8.80699 -8.54128 -8.42033 -6.73646 -5.86932 -3.27793 1.34759 2.83958 2.87653 3.33805 3.35595 3.39531 3.41524 3.48238 4.41341 4.44625 4.82898 5.02820 5.19014 5.26328 5.30881 5.39750 5.46753 5.55221 5.69916 5.83836 5.92333 5.96408 5.99713 6.10448 6.14106 6.22522 6.25459 6.36076 6.44455 6.59241 6.63148 6.63852 6.77862 6.88795 6.99004 7.14464 7.20036 7.47756 7.68845 7.74057 7.91279 8.37522 8.39066 9.14402 9.77811 10.34553 11.21824 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.004596 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.004298 B = 6091.129536 C = 6667.411850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.089 3.911 3 N -0.502 5.502 4 C 0.214 3.786 5 N -0.553 5.553 6 H 0.424 0.576 7 C -0.086 4.086 8 C 0.596 3.404 9 O -0.525 6.525 10 N -0.708 5.708 11 C 0.185 3.815 12 C -0.161 4.161 13 C -0.146 4.146 14 C 0.173 3.827 15 N -0.590 5.590 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.907 5.907 20 Si 0.902 3.098 21 H -0.291 1.291 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.150 3.850 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.214 0.786 30 H 0.393 0.607 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.011 0.989 38 H 0.254 0.746 39 H 0.014 0.986 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 8.266 9.555 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 N -0.223 5.223 4 C -0.070 4.070 5 N -0.158 5.158 6 H 0.263 0.737 7 C -0.202 4.202 8 C 0.382 3.618 9 O -0.402 6.402 10 N -0.358 5.358 11 C 0.101 3.899 12 C -0.219 4.219 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.313 5.313 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.551 5.551 20 Si 0.732 3.268 21 H -0.217 1.217 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.024 3.976 25 C -0.183 4.183 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.230 0.770 30 H 0.227 0.773 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.029 0.971 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.306 8.804 9.517 14.008 hybrid contribution 1.913 -1.591 -0.581 2.555 sum -3.393 7.213 8.936 11.974 Atomic orbital electron populations 1.20262 0.86622 1.03610 1.02754 1.21034 0.96848 0.86670 0.99972 1.70112 1.00480 1.30572 1.21114 1.25086 0.97365 0.82165 1.02364 1.43377 1.08258 1.08820 1.55308 0.73708 1.21140 0.84205 0.95540 1.19306 1.16760 0.86066 0.82337 0.76638 1.90729 1.16096 1.82619 1.50766 1.46065 1.08937 1.06475 1.74325 1.20308 0.95300 0.79054 0.95286 1.22233 1.01036 1.02111 0.96490 1.22536 0.96185 0.99322 1.00563 1.20722 0.92798 0.99073 0.82742 1.44044 1.20895 1.50408 1.15946 1.19178 0.90741 1.20459 1.07638 0.91696 1.25001 0.96345 0.98978 0.99265 1.69998 0.99983 1.36901 1.48260 0.86364 0.77152 0.82866 0.80388 1.21657 1.21009 1.20876 1.20933 0.88087 0.93830 0.94750 1.22487 0.98858 1.01596 0.95342 0.91049 0.91348 0.89154 0.76991 0.77297 0.93407 0.90727 0.92075 0.90783 0.92829 0.89193 0.97086 0.93649 0.96859 0.92989 0.91655 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 9.88 36.01 0.36 -0.61 16 2 C 0.09 1.29 7.15 -82.51 -0.59 0.70 16 3 N -0.50 -6.94 11.20 -10.64 -0.12 -7.06 16 4 C 0.21 2.25 13.01 -90.58 -1.18 1.07 16 5 N -0.55 -6.04 6.07 -10.79 -0.07 -6.10 16 6 H 0.42 3.58 8.32 -40.82 -0.34 3.24 16 7 C -0.09 -1.22 7.07 -82.15 -0.58 -1.80 16 8 C 0.60 9.35 7.21 -12.82 -0.09 9.25 16 9 O -0.53 -9.16 11.03 5.20 0.06 -9.11 16 10 N -0.71 -10.66 4.09 -48.84 -0.20 -10.86 16 11 C 0.19 3.01 0.66 -131.78 -0.09 2.92 16 12 C -0.16 -2.34 8.40 37.16 0.31 -2.03 16 13 C -0.15 -2.53 4.96 -26.61 -0.13 -2.66 16 14 C 0.17 3.75 5.03 -3.71 -0.02 3.73 16 15 N -0.59 -14.13 2.99 -172.02 -0.51 -14.65 16 16 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.91 -25.12 11.19 55.49 0.62 -24.50 16 20 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.15 3.19 6.28 -3.46 -0.02 3.17 16 25 C -0.14 -2.60 4.69 -26.36 -0.12 -2.72 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.26 6.49 -51.93 -0.34 0.92 16 29 H 0.21 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.39 5.45 6.52 -40.82 -0.27 5.18 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.17 6.16 -51.93 -0.32 0.85 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 37 H 0.01 0.24 6.95 -51.93 -0.36 -0.12 16 38 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.01 0.30 7.74 -51.93 -0.40 -0.10 16 40 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.38 6.20 -51.93 -0.32 1.05 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -31.44 329.88 -8.67 -40.11 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.00 Total: 6.88 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.39 Total: 4.15 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.28 Total: -63.18 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.06 Total: -9.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.44 -8.67 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045652690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.812 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds