Wall clock time and date at job start Tue Mar 31 2020 04:17:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.39869 * 126.03622 * 2 1
4 4 N 1.30839 * 108.20032 * 179.97438 * 3 2 1
5 5 N 1.40091 * 108.20438 * 359.97438 * 4 3 2
6 6 C 1.46503 * 126.03326 * 180.02562 * 5 4 3
7 7 C 1.50698 * 109.47151 * 305.01975 * 6 5 4
8 8 O 1.21280 * 119.99745 * 0.02562 * 7 6 5
9 9 N 1.34774 * 119.99753 * 180.02562 * 7 6 5
10 10 C 1.47290 * 125.79121 * 180.02562 * 9 7 6
11 11 C 1.54325 * 107.30599 * 178.92556 * 10 9 7
12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9
13 13 C 1.53003 * 110.72022 * 219.45263 * 11 10 9
14 14 C 1.55154 * 102.94303 * 337.81911 * 11 10 9
15 15 H 1.09008 * 111.00345 * 277.42446 * 14 11 10
16 16 N 1.46496 * 111.00463 * 153.57766 * 14 11 10
17 17 C 1.36940 * 120.00174 * 161.35219 * 16 14 11
18 18 H 1.08003 * 119.99978 * 359.97438 * 17 16 14
19 19 C 1.38805 * 120.00135 * 180.02562 * 17 16 14
20 20 N 1.31621 * 120.00230 * 359.97438 * 19 17 16
21 21 Si 1.86804 * 119.99894 * 179.97438 * 19 17 16
22 22 H 1.48497 * 109.47316 * 359.97438 * 21 19 17
23 23 H 1.48501 * 109.47243 * 119.99799 * 21 19 17
24 24 H 1.48505 * 109.47004 * 239.99347 * 21 19 17
25 25 C 1.47425 * 125.65138 * 0.02907 * 9 7 6
26 26 C 1.34950 * 107.92574 * 0.26264 * 5 4 3
27 27 H 1.08998 * 109.46938 * 89.98151 * 1 2 3
28 28 H 1.09008 * 109.46930 * 209.97473 * 1 2 3
29 29 H 1.08999 * 109.47341 * 329.97527 * 1 2 3
30 30 H 1.07991 * 125.90103 * 0.02562 * 3 2 1
31 31 H 1.09001 * 109.46828 * 185.02037 * 6 5 4
32 32 H 1.09000 * 109.47155 * 65.02528 * 6 5 4
33 33 H 1.09004 * 109.85762 * 59.50172 * 10 9 7
34 34 H 1.08995 * 110.00297 * 298.43119 * 10 9 7
35 35 H 1.08995 * 109.46983 * 173.52221 * 13 11 10
36 36 H 1.09001 * 109.47276 * 293.52685 * 13 11 10
37 37 H 1.09004 * 109.46998 * 53.52573 * 13 11 10
38 38 H 0.97000 * 120.00071 * 341.34892 * 16 14 11
39 39 H 0.96995 * 120.00143 * 179.97438 * 20 19 17
40 40 H 1.09002 * 110.36696 * 85.25946 * 25 9 7
41 41 H 1.08995 * 110.36608 * 323.04783 * 25 9 7
42 42 H 1.07994 * 126.12665 * 179.73786 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3299 1.1310 0.0000
4 7 3.5754 0.7303 0.0006
5 7 3.5844 -0.6706 0.0015
6 6 4.7747 -1.5248 0.0029
7 6 5.6590 -1.1560 -1.1603
8 8 5.3278 -0.2669 -1.9158
9 7 6.8177 -1.8143 -1.3610
10 6 7.7751 -1.5602 -2.4511
11 6 8.9578 -2.5329 -2.2594
12 1 8.8295 -3.4224 -2.8761
13 6 10.2850 -1.8403 -2.5754
14 6 8.8713 -2.8924 -0.7526
15 1 9.3485 -2.1271 -0.1403
16 7 9.4566 -4.2100 -0.4927
17 6 9.8288 -4.5551 0.7792
18 1 9.6913 -3.8557 1.5906
19 6 10.3839 -5.8033 1.0254
20 7 10.5520 -6.6555 0.0364
21 14 10.8922 -6.2737 2.7603
22 1 10.6011 -5.1480 3.6839
23 1 10.1334 -7.4758 3.1897
24 1 12.3469 -6.5713 2.7863
25 6 7.3392 -2.9106 -0.5246
26 6 2.3032 -1.0942 -0.0044
27 1 -0.3633 0.0003 -1.0277
28 1 -0.3633 -0.8903 0.5135
29 1 -0.3634 0.8897 0.5142
30 1 1.9951 2.1577 0.0004
31 1 4.4730 -2.5684 -0.0865
32 1 5.3222 -1.3834 0.9347
33 1 8.1297 -0.5308 -2.4001
34 1 7.2992 -1.7408 -3.4149
35 1 11.1109 -2.5057 -2.3243
36 1 10.3242 -1.5971 -3.6373
37 1 10.3654 -0.9244 -1.9898
38 1 9.5805 -4.8380 -1.2215
39 1 10.9402 -7.5275 0.2084
40 1 6.9194 -3.8644 -0.8443
41 1 7.1097 -2.7289 0.5253
42 1 1.9725 -2.1222 -0.0093
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054469918.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:32
Heat of formation + Delta-G solvation = 59.554097 kcal
Electronic energy + Delta-G solvation = -23099.050847 eV
Core-core repulsion = 19695.344186 eV
Total energy + Delta-G solvation = -3403.706661 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.28321 -39.79535 -37.63686 -34.17034 -33.76034 -32.58886 -31.61345 -30.81071
-28.83199 -27.60721 -26.46594 -25.17368 -24.05720 -21.93171 -21.17687 -20.41470
-19.98706 -19.08296 -17.33944 -17.16344 -16.72516 -16.16049 -15.47369 -14.96126
-14.58138 -14.32855 -14.02756 -13.64581 -13.47871 -13.22592 -13.21962 -13.05891
-13.03481 -12.82106 -12.58248 -12.24014 -11.99799 -11.89357 -11.73189 -11.19346
-11.09199 -10.83211 -10.68660 -10.52753 -10.30285 -10.05164 -10.00658 -9.82395
-9.33837 -9.10914 -8.46479 -8.36304 -7.18125 -5.93743 -3.25106 1.83409
2.33128 2.63073 2.80158 3.12179 3.33099 3.39864 3.41597 4.31162
4.46477 4.55134 4.72083 4.92049 4.96506 4.98369 5.04875 5.14643
5.18349 5.35513 5.45645 5.55618 5.58452 5.64858 5.73986 5.74925
5.83929 5.88232 5.93474 6.06927 6.12315 6.14918 6.24289 6.36818
6.39639 6.53371 6.63484 6.77716 6.91772 7.55405 7.62644 7.70872
8.19620 8.24042 9.35922 9.88730 10.23666 11.28054
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.018360 B = 0.003436 C = 0.003018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1524.723076 B = 8147.614305 C = 9274.590792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C -0.244 4.244
3 C 0.040 3.960
4 N -0.264 5.264
5 N -0.359 5.359
6 C 0.120 3.880
7 C 0.513 3.487
8 O -0.525 6.525
9 N -0.613 5.613
10 C 0.119 3.881
11 C -0.113 4.113
12 H 0.085 0.915
13 C -0.135 4.135
14 C 0.178 3.822
15 H 0.066 0.934
16 N -0.710 5.710
17 C -0.250 4.250
18 H 0.073 0.927
19 C -0.007 4.007
20 N -0.928 5.928
21 Si 0.907 3.093
22 H -0.279 1.279
23 H -0.290 1.290
24 H -0.290 1.290
25 C 0.066 3.934
26 C 0.052 3.948
27 H 0.058 0.942
28 H 0.058 0.942
29 H 0.061 0.939
30 H 0.180 0.820
31 H 0.125 0.875
32 H 0.115 0.885
33 H 0.066 0.934
34 H 0.062 0.938
35 H 0.068 0.932
36 H 0.050 0.950
37 H 0.053 0.947
38 H 0.387 0.613
39 H 0.257 0.743
40 H 0.073 0.927
41 H 0.069 0.931
42 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.022 9.558 -1.622 17.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.256 4.256
3 C -0.147 4.147
4 N -0.084 5.084
5 N -0.142 5.142
6 C -0.005 4.005
7 C 0.299 3.701
8 O -0.400 6.400
9 N -0.348 5.348
10 C -0.003 4.003
11 C -0.132 4.132
12 H 0.103 0.897
13 C -0.192 4.192
14 C 0.066 3.934
15 H 0.084 0.916
16 N -0.350 5.350
17 C -0.380 4.380
18 H 0.091 0.909
19 C -0.204 4.204
20 N -0.575 5.575
21 Si 0.738 3.262
22 H -0.204 1.204
23 H -0.217 1.217
24 H -0.217 1.217
25 C -0.059 4.059
26 C -0.093 4.093
27 H 0.077 0.923
28 H 0.077 0.923
29 H 0.080 0.920
30 H 0.197 0.803
31 H 0.142 0.858
32 H 0.133 0.867
33 H 0.085 0.915
34 H 0.081 0.919
35 H 0.087 0.913
36 H 0.069 0.931
37 H 0.072 0.928
38 H 0.222 0.778
39 H 0.067 0.933
40 H 0.091 0.909
41 H 0.088 0.912
42 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -12.836 10.297 -1.823 16.557
hybrid contribution -0.484 -1.031 0.723 1.349
sum -13.321 9.266 -1.100 16.264
Atomic orbital electron populations
1.20022 0.89409 1.01929 1.01386 1.20101 0.96957 0.91914 1.16581
1.23803 0.90098 0.99711 1.01093 1.77488 1.20882 0.88316 1.21728
1.48006 1.04462 1.04818 1.56868 1.21475 0.85142 0.94147 0.99726
1.20073 0.81145 0.82379 0.86481 1.90757 1.72289 1.30204 1.46787
1.48547 1.19691 1.36378 1.30142 1.22025 0.89046 0.99493 0.89781
1.22481 0.93804 0.98094 0.98863 0.89659 1.21671 0.96700 1.00392
1.00479 1.21345 0.89477 0.90174 0.92440 0.91577 1.42310 1.72256
1.12067 1.08391 1.19267 1.34434 0.98497 0.85850 0.90910 1.24770
1.01347 0.96705 0.97556 1.69664 1.49713 1.07963 1.30182 0.86128
0.78056 0.78151 0.83867 1.20434 1.21742 1.21734 1.23619 0.99491
0.88675 0.94158 1.22309 0.83832 1.00104 1.03065 0.92285 0.92293
0.92005 0.80311 0.85751 0.86696 0.91528 0.91943 0.91265 0.93128
0.92826 0.77803 0.93320 0.90870 0.91210 0.81086
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.55 10.37 36.01 0.37 -0.17 16
2 C -0.24 -2.75 6.10 -105.05 -0.64 -3.39 16
3 C 0.04 0.52 11.96 -17.36 -0.21 0.31 16
4 N -0.26 -4.20 11.64 30.62 0.36 -3.85 16
5 N -0.36 -5.01 3.40 -62.55 -0.21 -5.22 16
6 C 0.12 1.49 6.00 -5.19 -0.03 1.46 16
7 C 0.51 8.12 7.88 -10.99 -0.09 8.03 16
8 O -0.52 -10.29 16.04 5.56 0.09 -10.20 16
9 N -0.61 -9.25 3.34 -170.31 -0.57 -9.81 16
10 C 0.12 1.75 6.49 -2.92 -0.02 1.73 16
11 C -0.11 -1.68 3.17 -88.78 -0.28 -1.96 16
12 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16
13 C -0.13 -1.85 9.16 37.16 0.34 -1.51 16
14 C 0.18 3.12 3.13 -65.79 -0.21 2.92 16
15 H 0.07 1.21 8.04 -51.92 -0.42 0.79 16
16 N -0.71 -15.79 5.28 -51.35 -0.27 -16.06 16
17 C -0.25 -6.28 9.98 -15.06 -0.15 -6.43 16
18 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16
19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16
20 N -0.93 -26.15 13.06 55.49 0.72 -25.42 16
21 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16
22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
25 C 0.07 1.02 6.38 -2.53 -0.02 1.01 16
26 C 0.05 0.60 11.36 -17.22 -0.20 0.40 16
27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16
29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16
31 H 0.12 1.15 8.07 -51.93 -0.42 0.73 16
32 H 0.12 1.28 7.85 -51.93 -0.41 0.87 16
33 H 0.07 0.98 7.77 -51.93 -0.40 0.58 16
34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16
38 H 0.39 9.25 7.71 -40.82 -0.31 8.94 16
39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16
41 H 0.07 1.01 7.47 -51.93 -0.39 0.62 16
42 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16
LS Contribution 353.31 15.07 5.32 5.32
Total: -1.00 -32.49 353.31 -7.33 -39.82
By element:
Atomic # 1 Polarization: 13.90 SS G_CDS: -6.53 Total: 7.36 kcal
Atomic # 6 Polarization: 3.31 SS G_CDS: -1.22 Total: 2.10 kcal
Atomic # 7 Polarization: -60.40 SS G_CDS: 0.03 Total: -60.37 kcal
Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal
Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -32.49 -7.33 -39.82 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054469918.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.377 kcal
(2) G-P(sol) polarization free energy of solvation -32.490 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.887 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds