Wall clock time and date at job start Tue Mar 31 2020 04:17:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.39869 * 126.03622 * 2 1
4 4 N 1.30839 * 108.20032 * 179.97438 * 3 2 1
5 5 N 1.40091 * 108.20438 * 359.97438 * 4 3 2
6 6 C 1.46503 * 126.03326 * 180.02562 * 5 4 3
7 7 C 1.50698 * 109.47151 * 305.01975 * 6 5 4
8 8 O 1.21280 * 119.99745 * 0.02562 * 7 6 5
9 9 N 1.34774 * 119.99753 * 180.02562 * 7 6 5
10 10 C 1.47290 * 125.79121 * 180.02562 * 9 7 6
11 11 C 1.54325 * 107.30599 * 178.92556 * 10 9 7
12 12 H 1.08997 * 110.72163 * 96.18354 * 11 10 9
13 13 C 1.53003 * 110.72022 * 219.45263 * 11 10 9
14 14 C 1.55154 * 102.94303 * 337.81911 * 11 10 9
15 15 H 1.09008 * 111.00345 * 277.42446 * 14 11 10
16 16 N 1.46496 * 111.00463 * 153.57766 * 14 11 10
17 17 C 1.36940 * 120.00174 * 161.35219 * 16 14 11
18 18 H 1.08003 * 119.99978 * 359.97438 * 17 16 14
19 19 C 1.38805 * 120.00135 * 180.02562 * 17 16 14
20 20 N 1.31621 * 120.00230 * 359.97438 * 19 17 16
21 21 Si 1.86804 * 119.99894 * 179.97438 * 19 17 16
22 22 H 1.48497 * 109.47316 * 359.97438 * 21 19 17
23 23 H 1.48501 * 109.47243 * 119.99799 * 21 19 17
24 24 H 1.48505 * 109.47004 * 239.99347 * 21 19 17
25 25 C 1.47425 * 125.65138 * 0.02907 * 9 7 6
26 26 C 1.34950 * 107.92574 * 0.26264 * 5 4 3
27 27 H 1.08998 * 109.46938 * 89.98151 * 1 2 3
28 28 H 1.09008 * 109.46930 * 209.97473 * 1 2 3
29 29 H 1.08999 * 109.47341 * 329.97527 * 1 2 3
30 30 H 1.07991 * 125.90103 * 0.02562 * 3 2 1
31 31 H 1.09001 * 109.46828 * 185.02037 * 6 5 4
32 32 H 1.09000 * 109.47155 * 65.02528 * 6 5 4
33 33 H 1.09004 * 109.85762 * 59.50172 * 10 9 7
34 34 H 1.08995 * 110.00297 * 298.43119 * 10 9 7
35 35 H 1.08995 * 109.46983 * 173.52221 * 13 11 10
36 36 H 1.09001 * 109.47276 * 293.52685 * 13 11 10
37 37 H 1.09004 * 109.46998 * 53.52573 * 13 11 10
38 38 H 0.97000 * 120.00071 * 341.34892 * 16 14 11
39 39 H 0.96995 * 120.00143 * 179.97438 * 20 19 17
40 40 H 1.09002 * 110.36696 * 85.25946 * 25 9 7
41 41 H 1.08995 * 110.36608 * 323.04783 * 25 9 7
42 42 H 1.07994 * 126.12665 * 179.73786 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3299 1.1310 0.0000
4 7 3.5754 0.7303 0.0006
5 7 3.5844 -0.6706 0.0015
6 6 4.7747 -1.5248 0.0029
7 6 5.6590 -1.1560 -1.1603
8 8 5.3278 -0.2669 -1.9158
9 7 6.8177 -1.8143 -1.3610
10 6 7.7751 -1.5602 -2.4511
11 6 8.9578 -2.5329 -2.2594
12 1 8.8295 -3.4224 -2.8761
13 6 10.2850 -1.8403 -2.5754
14 6 8.8713 -2.8924 -0.7526
15 1 9.3485 -2.1271 -0.1403
16 7 9.4566 -4.2100 -0.4927
17 6 9.8288 -4.5551 0.7792
18 1 9.6913 -3.8557 1.5906
19 6 10.3839 -5.8033 1.0254
20 7 10.5520 -6.6555 0.0364
21 14 10.8922 -6.2737 2.7603
22 1 10.6011 -5.1480 3.6839
23 1 10.1334 -7.4758 3.1897
24 1 12.3469 -6.5713 2.7863
25 6 7.3392 -2.9106 -0.5246
26 6 2.3032 -1.0942 -0.0044
27 1 -0.3633 0.0003 -1.0277
28 1 -0.3633 -0.8903 0.5135
29 1 -0.3634 0.8897 0.5142
30 1 1.9951 2.1577 0.0004
31 1 4.4730 -2.5684 -0.0865
32 1 5.3222 -1.3834 0.9347
33 1 8.1297 -0.5308 -2.4001
34 1 7.2992 -1.7408 -3.4149
35 1 11.1109 -2.5057 -2.3243
36 1 10.3242 -1.5971 -3.6373
37 1 10.3654 -0.9244 -1.9898
38 1 9.5805 -4.8380 -1.2215
39 1 10.9402 -7.5275 0.2084
40 1 6.9194 -3.8644 -0.8443
41 1 7.1097 -2.7289 0.5253
42 1 1.9725 -2.1222 -0.0093
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054469918.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:31
Heat of formation + Delta-G solvation = 38.556357 kcal
Electronic energy + Delta-G solvation = -23099.961378 eV
Core-core repulsion = 19695.344186 eV
Total energy + Delta-G solvation = -3404.617191 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.21563 -41.03859 -38.97788 -35.87299 -34.74958 -33.91125 -32.56070 -32.41682
-29.80165 -29.11869 -27.46074 -26.16178 -25.78839 -23.24647 -22.28150 -21.33669
-21.28699 -20.24023 -19.09879 -18.35977 -17.79173 -17.43218 -16.67131 -16.45075
-15.74533 -15.59734 -15.36075 -15.00106 -14.55076 -14.52272 -14.41034 -14.18921
-14.06697 -13.89300 -13.51247 -13.31501 -13.08806 -13.02559 -12.89151 -12.86554
-12.67632 -12.22473 -12.12200 -12.00312 -11.70954 -11.47002 -11.39920 -11.21946
-10.95024 -10.35256 -9.75842 -9.23179 -9.03383 -7.93386 -5.22900 0.91656
1.41962 1.43311 1.50723 1.53008 1.61064 1.92193 1.97274 2.57612
3.20596 3.38655 3.61067 3.72751 3.77506 3.91967 3.97211 4.07361
4.15063 4.17299 4.36567 4.46036 4.50531 4.55089 4.60672 4.65692
4.85295 4.87941 4.93227 5.03101 5.05306 5.11381 5.14708 5.27306
5.31507 5.33897 5.44400 5.57501 5.76336 6.09037 6.27553 6.39595
6.78180 6.98512 7.36059 8.06739 8.31053 9.29483
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.018360 B = 0.003436 C = 0.003018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1524.723076 B = 8147.614305 C = 9274.590792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.252 4.252
3 C 0.032 3.968
4 N -0.321 5.321
5 N -0.373 5.373
6 C 0.121 3.879
7 C 0.512 3.488
8 O -0.566 6.566
9 N -0.610 5.610
10 C 0.121 3.879
11 C -0.102 4.102
12 H 0.082 0.918
13 C -0.130 4.130
14 C 0.171 3.829
15 H 0.061 0.939
16 N -0.719 5.719
17 C -0.238 4.238
18 H 0.080 0.920
19 C -0.068 4.068
20 N -0.965 5.965
21 Si 0.966 3.034
22 H -0.265 1.265
23 H -0.295 1.295
24 H -0.299 1.299
25 C 0.080 3.920
26 C 0.048 3.952
27 H 0.062 0.938
28 H 0.073 0.927
29 H 0.071 0.929
30 H 0.200 0.800
31 H 0.159 0.841
32 H 0.127 0.873
33 H 0.067 0.933
34 H 0.067 0.933
35 H 0.050 0.950
36 H 0.071 0.929
37 H 0.058 0.942
38 H 0.377 0.623
39 H 0.250 0.750
40 H 0.072 0.928
41 H 0.084 0.916
42 H 0.207 0.793
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.595 9.882 -0.895 18.484
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.263 4.263
3 C -0.154 4.154
4 N -0.141 5.141
5 N -0.156 5.156
6 C -0.003 4.003
7 C 0.299 3.701
8 O -0.445 6.445
9 N -0.344 5.344
10 C -0.002 4.002
11 C -0.121 4.121
12 H 0.101 0.899
13 C -0.188 4.188
14 C 0.060 3.940
15 H 0.079 0.921
16 N -0.358 5.358
17 C -0.369 4.369
18 H 0.098 0.902
19 C -0.260 4.260
20 N -0.616 5.616
21 Si 0.796 3.204
22 H -0.189 1.189
23 H -0.222 1.222
24 H -0.227 1.227
25 C -0.045 4.045
26 C -0.096 4.096
27 H 0.081 0.919
28 H 0.092 0.908
29 H 0.090 0.910
30 H 0.216 0.784
31 H 0.176 0.824
32 H 0.145 0.855
33 H 0.085 0.915
34 H 0.085 0.915
35 H 0.069 0.931
36 H 0.090 0.910
37 H 0.077 0.923
38 H 0.210 0.790
39 H 0.059 0.941
40 H 0.090 0.910
41 H 0.102 0.898
42 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -14.435 10.669 -1.080 17.982
hybrid contribution -0.045 -1.026 0.442 1.118
sum -14.479 9.643 -0.637 17.408
Atomic orbital electron populations
1.20075 0.87066 1.03202 1.02010 1.20565 0.98599 0.91298 1.15880
1.24317 0.89801 1.01316 0.99990 1.77405 1.22689 0.89912 1.24132
1.48148 1.05484 1.04385 1.57573 1.21648 0.84709 0.95627 0.98350
1.20687 0.81119 0.81451 0.86808 1.90737 1.73191 1.31999 1.48568
1.48558 1.19755 1.36081 1.29980 1.22015 0.88802 0.99297 0.90065
1.22385 0.94698 0.98175 0.96887 0.89938 1.21632 0.95171 0.99953
1.02040 1.21488 0.90470 0.87853 0.94186 0.92095 1.42390 1.72818
1.13454 1.07188 1.19615 1.32194 0.98080 0.87055 0.90211 1.25456
1.02783 0.97234 1.00576 1.69799 1.51745 1.08155 1.31875 0.85193
0.76831 0.77858 0.80558 1.18948 1.22240 1.22691 1.23317 0.97436
0.88732 0.95023 1.22993 0.82950 1.01872 1.01779 0.91877 0.90804
0.91017 0.78373 0.82358 0.85520 0.91474 0.91480 0.93103 0.90979
0.92270 0.78990 0.94065 0.90980 0.89761 0.77634
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.86 10.37 71.24 0.74 -0.12 16
2 C -0.25 -5.20 6.10 -20.14 -0.12 -5.32 16
3 C 0.03 0.80 11.96 85.24 1.02 1.82 16
4 N -0.32 -10.09 11.64 -57.03 -0.66 -10.75 16
5 N -0.37 -9.84 3.40 -351.80 -1.20 -11.04 16
6 C 0.12 2.76 6.00 85.63 0.51 3.27 16
7 C 0.51 15.54 7.88 87.66 0.69 16.23 16
8 O -0.57 -22.03 16.04 -3.03 -0.05 -22.08 16
9 N -0.61 -17.47 3.34 -811.12 -2.71 -20.17 16
10 C 0.12 3.39 6.49 86.68 0.56 3.95 16
11 C -0.10 -2.93 3.17 -9.60 -0.03 -2.96 16
12 H 0.08 2.46 8.00 -2.39 -0.02 2.44 16
13 C -0.13 -3.44 9.16 71.98 0.66 -2.78 16
14 C 0.17 5.79 3.13 46.38 0.15 5.94 16
15 H 0.06 2.15 8.04 -2.38 -0.02 2.14 16
16 N -0.72 -31.63 5.28 -316.38 -1.67 -33.30 16
17 C -0.24 -11.77 9.98 84.03 0.84 -10.93 16
18 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16
19 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16
20 N -0.97 -55.03 13.06 21.65 0.28 -54.74 16
21 Si 0.97 43.01 29.55 68.60 2.03 45.04 16
22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16
23 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16
24 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16
25 C 0.08 2.32 6.38 86.86 0.55 2.88 16
26 C 0.05 0.99 11.36 83.54 0.95 1.94 16
27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
29 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16
30 H 0.20 3.67 8.06 -2.92 -0.02 3.65 16
31 H 0.16 2.42 8.07 -2.39 -0.02 2.40 16
32 H 0.13 2.55 7.85 -2.39 -0.02 2.53 16
33 H 0.07 1.89 7.77 -2.38 -0.02 1.87 16
34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
37 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16
38 H 0.38 18.11 7.71 -92.71 -0.71 17.39 16
39 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16
40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16
41 H 0.08 2.22 7.47 -2.39 -0.02 2.20 16
42 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16
Total: -1.00 -70.53 353.31 3.31 -67.22
By element:
Atomic # 1 Polarization: 28.74 SS G_CDS: 0.30 Total: 29.04 kcal
Atomic # 6 Polarization: 3.82 SS G_CDS: 6.98 Total: 10.80 kcal
Atomic # 7 Polarization: -124.05 SS G_CDS: -5.95 Total: -130.01 kcal
Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal
Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal
Total: -70.53 3.31 -67.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054469918.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.773 kcal
(2) G-P(sol) polarization free energy of solvation -70.526 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.556 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds