Wall clock time and date at job start Tue Mar 31 2020 04:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47153 * 304.96829 * 6 5 4 8 8 O 1.21275 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00340 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00280 * 180.02562 * 9 7 6 11 11 H 1.08992 * 110.88580 * 31.11960 * 10 9 7 12 12 C 1.54908 * 111.00389 * 267.19316 * 10 9 7 13 13 N 1.47422 * 104.83448 * 204.91453 * 12 10 9 14 14 C 1.36935 * 125.65267 * 204.08232 * 13 12 10 15 15 H 1.08002 * 120.00009 * 180.02562 * 14 13 12 16 16 C 1.38812 * 119.99645 * 0.06178 * 14 13 12 17 17 N 1.31611 * 120.00150 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99567 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47379 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46929 * 119.99735 * 18 16 14 21 21 H 1.48503 * 109.46777 * 239.99264 * 18 16 14 22 22 C 1.47028 * 108.69974 * 24.13207 * 13 12 10 23 23 C 1.54323 * 107.27352 * 358.93951 * 22 13 12 24 24 H 1.08998 * 110.71411 * 96.16817 * 23 22 13 25 25 C 1.52999 * 110.71922 * 219.44624 * 23 22 13 26 26 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 27 27 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 30 30 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 31 31 H 1.08999 * 109.47614 * 64.96876 * 6 5 4 32 32 H 1.09003 * 109.46855 * 184.97207 * 6 5 4 33 33 H 0.97006 * 119.99635 * 0.02562 * 9 7 6 34 34 H 1.09000 * 110.37173 * 323.75588 * 12 10 9 35 35 H 1.09006 * 110.36369 * 86.08364 * 12 10 9 36 36 H 0.97001 * 120.00256 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.88321 * 239.52042 * 22 13 12 38 38 H 1.09002 * 109.88164 * 118.36169 * 22 13 12 39 39 H 1.09003 * 109.46980 * 173.52430 * 25 23 22 40 40 H 1.09001 * 109.46757 * 293.51862 * 25 23 22 41 41 H 1.08988 * 109.47334 * 53.52095 * 25 23 22 42 42 H 1.08003 * 126.13278 * 180.23755 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6586 -1.1559 -1.1621 8 8 5.3273 -0.2668 -1.9174 9 7 6.8174 -1.8141 -1.3633 10 6 7.6770 -1.4551 -2.4939 11 1 7.5861 -0.3950 -2.7299 12 6 7.3594 -2.3297 -3.7324 13 7 8.6023 -2.3269 -4.5252 14 6 8.6896 -2.5508 -5.8733 15 1 9.6518 -2.5275 -6.3634 16 6 7.5414 -2.8068 -6.6101 17 7 6.3689 -2.8349 -6.0129 18 14 7.6605 -3.1116 -8.4493 19 1 9.0807 -3.0253 -8.8745 20 1 7.1307 -4.4631 -8.7624 21 1 6.8644 -2.0880 -9.1731 22 6 9.7328 -2.0450 -3.6284 23 6 9.1542 -1.8378 -2.2129 24 1 9.2104 -2.7600 -1.6346 25 6 9.8804 -0.7000 -1.4924 26 6 2.3032 -1.0942 0.0051 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8903 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9951 2.1578 -0.0008 31 1 5.3225 -1.3836 0.9330 32 1 4.4728 -2.5684 -0.0882 33 1 7.0822 -2.5256 -0.7594 34 1 7.1075 -3.3449 -3.4256 35 1 6.5425 -1.8922 -4.3064 36 1 5.5665 -3.0142 -6.5277 37 1 10.2480 -1.1414 -3.9542 38 1 10.4238 -2.8879 -3.6268 39 1 9.3834 -0.4947 -0.5442 40 1 10.9144 -0.9899 -1.3054 41 1 9.8607 0.1948 -2.1142 42 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079467376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:04 Heat of formation + Delta-G solvation = 72.225562 kcal Electronic energy + Delta-G solvation = -23405.336575 eV Core-core repulsion = 20002.179390 eV Total energy + Delta-G solvation = -3403.157185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18131 -39.42790 -37.52806 -33.95258 -33.62589 -32.66339 -31.54049 -30.37694 -28.98299 -27.42335 -25.73853 -25.41221 -23.59260 -21.64793 -20.50446 -20.24170 -20.12955 -19.41359 -17.07003 -17.03168 -16.80729 -15.70717 -15.32488 -14.93806 -14.51320 -14.26984 -13.74251 -13.62173 -13.37644 -13.10252 -12.98260 -12.91306 -12.74235 -12.53728 -12.33045 -12.09336 -11.89585 -11.72023 -11.24818 -11.10507 -10.81264 -10.66678 -10.42783 -10.36299 -9.98225 -9.86471 -9.79204 -9.72254 -9.19073 -8.66476 -8.49286 -8.26433 -6.85044 -5.64496 -3.08037 1.92599 2.44178 2.85257 2.89788 3.39167 3.41433 3.45826 3.48675 4.48233 4.52271 4.76304 4.84374 4.92154 5.06632 5.12761 5.26797 5.29619 5.41999 5.45138 5.52699 5.67907 5.73427 5.82714 5.94658 5.97456 6.01714 6.14009 6.16017 6.22680 6.36992 6.45637 6.64618 6.71690 6.75606 6.91893 7.00278 7.42302 7.61552 7.77643 7.79982 7.89512 8.36018 8.51491 9.20596 9.82064 10.44960 11.38616 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.004003 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.456126 B = 6992.504587 C = 8362.951730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.243 4.243 3 C 0.041 3.959 4 N -0.263 5.263 5 N -0.359 5.359 6 C 0.116 3.884 7 C 0.496 3.504 8 O -0.504 6.504 9 N -0.712 5.712 10 C 0.121 3.879 11 H 0.093 0.907 12 C 0.149 3.851 13 N -0.603 5.603 14 C -0.226 4.226 15 H 0.080 0.920 16 C -0.010 4.010 17 N -0.919 5.919 18 Si 0.915 3.085 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.141 3.859 23 C -0.111 4.111 24 H 0.073 0.927 25 C -0.137 4.137 26 C 0.052 3.948 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.180 0.820 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.394 0.606 34 H 0.013 0.987 35 H 0.111 0.889 36 H 0.252 0.748 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 1.068 17.117 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.255 4.255 3 C -0.147 4.147 4 N -0.083 5.083 5 N -0.141 5.141 6 C -0.010 4.010 7 C 0.279 3.721 8 O -0.377 6.377 9 N -0.364 5.364 10 C 0.016 3.984 11 H 0.111 0.889 12 C 0.023 3.977 13 N -0.330 5.330 14 C -0.354 4.354 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.567 5.567 18 Si 0.745 3.255 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.014 3.986 23 C -0.130 4.130 24 H 0.092 0.908 25 C -0.195 4.195 26 C -0.093 4.093 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.197 0.803 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.228 0.772 34 H 0.030 0.970 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.355 1.951 16.352 17.034 hybrid contribution -0.585 -1.018 -0.686 1.359 sum -4.940 0.933 15.667 16.454 Atomic orbital electron populations 1.20023 0.89462 1.01762 1.01520 1.20095 0.96945 0.91950 1.16468 1.23796 0.90110 0.99713 1.01056 1.77473 1.20864 0.88256 1.21715 1.47921 1.04398 1.04809 1.56990 1.21492 0.85536 0.94277 0.99649 1.20346 0.82247 0.83208 0.86324 1.90819 1.71519 1.29680 1.45680 1.45782 1.21430 1.38282 1.30920 1.22715 0.87490 1.01284 0.86907 0.88944 1.22216 0.91864 0.95239 0.88378 1.44398 1.01103 1.83567 1.03888 1.19118 0.93630 1.40999 0.81651 0.90251 1.24820 0.95312 1.02009 0.98426 1.69807 0.97392 1.55738 1.33755 0.85997 0.77309 0.77441 0.84737 1.20464 1.21749 1.21669 1.21352 0.91607 0.97701 0.87901 1.22429 0.95014 0.98196 0.97399 0.90818 1.21736 0.99571 0.98337 0.99824 1.22283 0.83867 1.00043 1.03112 0.92158 0.92078 0.92375 0.80340 0.87186 0.85915 0.77244 0.96953 0.87182 0.93733 0.95444 0.95836 0.93115 0.92869 0.92465 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.37 36.01 0.37 -0.24 16 2 C -0.24 -2.96 6.10 -105.05 -0.64 -3.60 16 3 C 0.04 0.56 11.96 -17.36 -0.21 0.35 16 4 N -0.26 -4.36 11.64 30.62 0.36 -4.00 16 5 N -0.36 -5.09 3.40 -62.54 -0.21 -5.30 16 6 C 0.12 1.32 6.99 -5.19 -0.04 1.29 16 7 C 0.50 8.16 7.86 -10.99 -0.09 8.07 16 8 O -0.50 -11.21 15.35 5.56 0.09 -11.12 16 9 N -0.71 -10.75 5.20 -51.73 -0.27 -11.02 16 10 C 0.12 2.33 2.87 -65.78 -0.19 2.15 16 11 H 0.09 2.04 7.44 -51.93 -0.39 1.65 16 12 C 0.15 3.69 5.58 -2.53 -0.01 3.67 16 13 N -0.60 -15.64 3.39 -170.07 -0.58 -16.22 16 14 C -0.23 -6.39 10.27 -15.06 -0.15 -6.55 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -27.65 10.09 55.49 0.56 -27.09 16 18 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C 0.14 2.90 6.84 -3.06 -0.02 2.88 16 23 C -0.11 -1.83 3.20 -88.78 -0.28 -2.12 16 24 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 25 C -0.14 -1.89 9.16 37.16 0.34 -1.55 16 26 C 0.05 0.63 11.36 -17.23 -0.20 0.43 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.12 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.39 4.35 8.57 -40.82 -0.35 4.00 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 3.24 5.87 -51.93 -0.31 2.94 16 36 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.03 0.57 7.76 -51.93 -0.40 0.16 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.84 8.06 -51.94 -0.42 0.43 16 42 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -37.19 349.17 -7.50 -44.69 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.47 Total: 2.93 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.21 Total: 4.40 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.14 Total: -63.63 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.19 -7.50 -44.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079467376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.914 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds