Wall clock time and date at job start Tue Mar 31 2020 04:16:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.35041 * 126.38133 * 2 1
4 4 H 0.96996 * 124.88387 * 0.03259 * 3 2 1
5 5 N 1.28470 * 110.22670 * 180.02562 * 3 2 1
6 6 C 1.31809 * 110.07279 * 0.02562 * 5 3 2
7 7 C 1.47712 * 126.51087 * 179.97438 * 6 5 3
8 8 O 1.21567 * 119.99469 * 180.02562 * 7 6 5
9 9 N 1.34776 * 120.00467 * 0.02562 * 7 6 5
10 10 C 1.46493 * 120.00061 * 180.02562 * 9 7 6
11 11 H 1.08998 * 110.78195 * 31.75947 * 10 9 7
12 12 C 1.54333 * 110.85255 * 268.69412 * 10 9 7
13 13 N 1.47023 * 107.26879 * 219.67787 * 12 10 9
14 14 C 1.36939 * 125.64945 * 178.84833 * 13 12 10
15 15 H 1.07997 * 119.99728 * 179.41145 * 14 13 12
16 16 C 1.38815 * 119.99845 * 359.69059 * 14 13 12
17 17 N 1.31619 * 119.99884 * 359.72042 * 16 14 13
18 18 Si 1.86798 * 119.99660 * 179.72678 * 16 14 13
19 19 H 1.48498 * 109.47416 * 59.99578 * 18 16 14
20 20 H 1.48508 * 109.46609 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.46903 * 299.99163 * 18 16 14
22 22 C 1.47419 * 108.70109 * 358.57834 * 13 12 10
23 23 C 1.54907 * 104.83203 * 24.36071 * 22 13 12
24 24 H 1.09001 * 111.00464 * 81.06554 * 23 22 13
25 25 C 1.53002 * 111.00504 * 204.91615 * 23 22 13
26 26 C 1.35362 * 126.38816 * 180.32032 * 2 1 3
27 27 C 1.50694 * 127.24808 * 359.97330 * 26 2 1
28 28 H 1.09002 * 109.47104 * 89.98195 * 1 2 3
29 29 H 1.09002 * 109.46938 * 209.97421 * 1 2 3
30 30 H 1.08997 * 109.47643 * 329.97685 * 1 2 3
31 31 H 0.97002 * 119.99556 * 0.02562 * 9 7 6
32 32 H 1.08997 * 109.99574 * 100.19551 * 12 10 9
33 33 H 1.09001 * 109.77592 * 339.02798 * 12 10 9
34 34 H 0.97000 * 119.99517 * 180.02562 * 17 16 14
35 35 H 1.09000 * 110.36612 * 143.20177 * 22 13 12
36 36 H 1.09004 * 110.36874 * 265.41109 * 22 13 12
37 37 H 1.08997 * 109.47509 * 58.54436 * 25 23 22
38 38 H 1.09004 * 109.47376 * 178.55013 * 25 23 22
39 39 H 1.09007 * 109.46764 * 298.54185 * 25 23 22
40 40 H 1.09009 * 109.46698 * 270.16073 * 27 26 2
41 41 H 1.08994 * 109.47672 * 30.16062 * 27 26 2
42 42 H 1.09002 * 109.47148 * 150.16763 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3080 1.0872 0.0000
4 1 1.9965 2.0058 0.0005
5 7 3.5420 0.7298 -0.0005
6 6 3.6320 -0.5853 -0.0015
7 6 4.8765 -1.3809 -0.0029
8 8 4.8214 -2.5953 -0.0041
9 7 6.0731 -0.7606 -0.0027
10 6 7.3072 -1.5498 -0.0047
11 1 7.1659 -2.4874 -0.5423
12 6 7.7887 -1.8202 1.4365
13 7 9.2534 -1.6924 1.4385
14 6 10.0655 -1.8354 2.5318
15 1 11.1353 -1.7311 2.4271
16 6 9.5141 -2.1201 3.7735
17 7 8.2102 -2.2472 3.9010
18 14 10.6225 -2.3227 5.2633
19 1 11.3841 -1.0679 5.4881
20 1 9.7943 -2.6198 6.4597
21 1 11.5702 -3.4413 5.0267
22 6 9.7035 -1.3913 0.0674
23 6 8.4779 -0.7366 -0.6175
24 1 8.4006 0.3183 -0.3545
25 6 8.5361 -0.9182 -2.1356
26 6 2.3100 -1.0897 -0.0061
27 6 1.8855 -2.5355 -0.0136
28 1 -0.3633 0.0003 -1.0277
29 1 -0.3633 -0.8902 0.5134
30 1 -0.3634 0.8897 0.5142
31 1 6.1170 0.2084 -0.0014
32 1 7.5040 -2.8270 1.7419
33 1 7.3518 -1.0873 2.1149
34 1 7.8249 -2.4458 4.7688
35 1 10.5429 -0.6963 0.0877
36 1 9.9841 -2.3088 -0.4499
37 1 8.5692 -1.9814 -2.3734
38 1 7.6511 -0.4718 -2.5891
39 1 9.4295 -0.4306 -2.5258
40 1 1.7807 -2.8888 1.0123
41 1 0.9304 -2.6312 -0.5301
42 1 2.6383 -3.1326 -0.5283
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001079498513.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:16:47
Heat of formation + Delta-G solvation = 53.711660 kcal
Electronic energy + Delta-G solvation = -23660.365603 eV
Core-core repulsion = 20256.405595 eV
Total energy + Delta-G solvation = -3403.960008 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.71033 -39.19997 -37.33731 -33.97067 -33.42718 -32.68781 -32.20658 -30.29870
-28.67994 -27.56559 -26.14084 -25.58049 -24.30088 -22.94841 -20.37474 -20.09724
-19.77089 -19.25243 -17.62621 -16.83420 -16.53674 -15.97390 -15.66402 -14.85254
-14.06399 -14.02359 -13.91954 -13.65246 -13.20690 -13.16785 -12.96190 -12.77941
-12.68866 -12.59806 -12.40181 -11.96892 -11.86377 -11.63234 -11.26163 -10.95407
-10.75049 -10.70710 -10.54079 -10.35327 -9.90515 -9.88207 -9.64522 -9.53269
-9.29180 -8.69691 -8.54848 -8.33005 -6.76084 -5.61974 -2.97277 1.68494
2.08083 2.79364 3.45681 3.49341 3.51440 3.58968 3.77216 4.51999
4.55490 4.57527 4.81519 5.14525 5.19424 5.24451 5.39029 5.41971
5.53434 5.54332 5.62031 5.70706 5.84657 5.88747 6.00166 6.08195
6.09233 6.20661 6.24298 6.28244 6.42143 6.56661 6.59197 6.70223
6.87452 6.93286 7.04266 7.63165 7.66156 7.81074 7.92962 8.10000
8.33360 8.67817 9.28735 9.89583 10.55017 11.48529
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017823 B = 0.004104 C = 0.003643
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1570.658668 B = 6820.314578 C = 7683.849802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.001 3.999
3 N -0.384 5.384
4 H 0.442 0.558
5 N -0.259 5.259
6 C -0.001 4.001
7 C 0.600 3.400
8 O -0.529 6.529
9 N -0.698 5.698
10 C 0.120 3.880
11 H 0.090 0.910
12 C 0.173 3.827
13 N -0.606 5.606
14 C -0.231 4.231
15 H 0.078 0.922
16 C -0.007 4.007
17 N -0.919 5.919
18 Si 0.912 3.088
19 H -0.286 1.286
20 H -0.291 1.291
21 H -0.285 1.285
22 C 0.141 3.859
23 C -0.114 4.114
24 H 0.077 0.923
25 C -0.136 4.136
26 C -0.144 4.144
27 C -0.079 4.079
28 H 0.076 0.924
29 H 0.085 0.915
30 H 0.069 0.931
31 H 0.401 0.599
32 H 0.048 0.952
33 H 0.051 0.949
34 H 0.253 0.747
35 H 0.041 0.959
36 H 0.022 0.978
37 H 0.055 0.945
38 H 0.049 0.951
39 H 0.053 0.947
40 H 0.068 0.932
41 H 0.058 0.942
42 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.020 7.211 -11.463 20.224
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.124 4.124
3 N -0.098 5.098
4 H 0.286 0.714
5 N -0.095 5.095
6 C -0.162 4.162
7 C 0.384 3.616
8 O -0.404 6.404
9 N -0.347 5.347
10 C 0.015 3.985
11 H 0.108 0.892
12 C 0.047 3.953
13 N -0.333 5.333
14 C -0.359 4.359
15 H 0.096 0.904
16 C -0.204 4.204
17 N -0.566 5.566
18 Si 0.742 3.258
19 H -0.212 1.212
20 H -0.216 1.216
21 H -0.212 1.212
22 C 0.015 3.985
23 C -0.134 4.134
24 H 0.095 0.905
25 C -0.194 4.194
26 C -0.154 4.154
27 C -0.136 4.136
28 H 0.095 0.905
29 H 0.104 0.896
30 H 0.087 0.913
31 H 0.236 0.764
32 H 0.066 0.934
33 H 0.069 0.931
34 H 0.063 0.937
35 H 0.060 0.940
36 H 0.040 0.960
37 H 0.074 0.926
38 H 0.068 0.932
39 H 0.072 0.928
40 H 0.086 0.914
41 H 0.077 0.923
42 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -14.386 7.184 -11.217 19.606
hybrid contribution -0.078 0.372 0.982 1.053
sum -14.464 7.556 -10.236 19.263
Atomic orbital electron populations
1.20305 0.86740 1.03828 1.03068 1.21167 0.95104 0.87016 1.09149
1.43147 1.03033 1.09271 1.54313 0.71357 1.73543 1.01446 1.15125
1.19353 1.22007 0.95199 0.89508 1.09533 1.16820 0.81592 0.86472
0.76717 1.90766 1.86529 1.12754 1.50334 1.45765 1.05142 1.10322
1.73513 1.22531 0.81542 0.94108 1.00300 0.89167 1.21486 0.83571
1.01119 0.89096 1.44401 1.02382 1.83652 1.02825 1.19005 0.89435
1.41951 0.85526 0.90400 1.24824 0.95969 1.01965 0.97632 1.69972
1.08866 1.54622 1.23118 0.86209 0.79298 0.77893 0.82395 1.21233
1.21649 1.21161 1.21576 0.94012 0.96302 0.86640 1.22615 0.96524
0.99748 0.94493 0.90454 1.21691 1.00939 1.01698 0.95097 1.20129
0.90725 0.96658 1.07857 1.20186 1.01115 0.89814 1.02508 0.90528
0.89586 0.91254 0.76423 0.93425 0.93074 0.93709 0.94030 0.96036
0.92603 0.93160 0.92795 0.91356 0.92286 0.89713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.49 10.14 36.01 0.37 -0.13 16
2 C 0.00 0.01 7.23 -82.21 -0.59 -0.58 16
3 N -0.38 -3.99 6.83 33.50 0.23 -3.76 16
4 H 0.44 2.78 8.96 -190.44 -1.71 1.07 16
5 N -0.26 -3.69 11.92 33.42 0.40 -3.29 16
6 C 0.00 -0.02 7.13 -82.77 -0.59 -0.61 16
7 C 0.60 11.48 7.82 -12.39 -0.10 11.38 16
8 O -0.53 -11.52 14.76 5.31 0.08 -11.44 16
9 N -0.70 -12.78 5.10 -53.01 -0.27 -13.05 16
10 C 0.12 2.43 2.77 -66.10 -0.18 2.25 16
11 H 0.09 1.91 7.42 -51.93 -0.39 1.52 16
12 C 0.17 4.47 5.13 -3.06 -0.02 4.45 16
13 N -0.61 -16.01 3.39 -170.07 -0.58 -16.59 16
14 C -0.23 -6.63 10.28 -15.06 -0.15 -6.78 16
15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16
16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16
17 N -0.92 -28.21 10.31 55.49 0.57 -27.64 16
18 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16
19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
22 C 0.14 2.97 6.70 -2.53 -0.02 2.96 16
23 C -0.11 -2.02 3.27 -88.47 -0.29 -2.30 16
24 H 0.08 1.33 8.01 -51.93 -0.42 0.92 16
25 C -0.14 -1.94 9.30 37.16 0.35 -1.60 16
26 C -0.14 -2.01 6.25 -104.41 -0.65 -2.66 16
27 C -0.08 -0.99 9.61 36.00 0.35 -0.65 16
28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.09 0.50 7.98 -51.93 -0.41 0.08 16
30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16
31 H 0.40 6.62 8.29 -40.82 -0.34 6.29 16
32 H 0.05 1.41 7.53 -51.93 -0.39 1.02 16
33 H 0.05 1.46 7.24 -51.93 -0.38 1.09 16
34 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16
35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.02 0.45 8.04 -51.93 -0.42 0.04 16
37 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16
38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
40 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16
41 H 0.06 0.56 8.00 -51.93 -0.42 0.14 16
42 H 0.08 1.25 6.72 -51.93 -0.35 0.90 16
LS Contribution 345.62 15.07 5.21 5.21
Total: -1.00 -35.20 345.62 -8.73 -43.93
By element:
Atomic # 1 Polarization: 11.21 SS G_CDS: -7.71 Total: 3.50 kcal
Atomic # 6 Polarization: 7.06 SS G_CDS: -1.63 Total: 5.43 kcal
Atomic # 7 Polarization: -64.68 SS G_CDS: 0.35 Total: -64.33 kcal
Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -35.20 -8.73 -43.93 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079498513.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.644 kcal
(2) G-P(sol) polarization free energy of solvation -35.201 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds