Wall clock time and date at job start Tue Mar 31 2020 04:16:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.35041 * 126.38133 * 2 1
4 4 H 0.96996 * 124.88387 * 0.03259 * 3 2 1
5 5 N 1.28470 * 110.22670 * 180.02562 * 3 2 1
6 6 C 1.31809 * 110.07279 * 0.02562 * 5 3 2
7 7 C 1.47712 * 126.51087 * 179.97438 * 6 5 3
8 8 O 1.21567 * 119.99469 * 180.02562 * 7 6 5
9 9 N 1.34776 * 120.00467 * 0.02562 * 7 6 5
10 10 C 1.46493 * 120.00061 * 180.02562 * 9 7 6
11 11 H 1.08998 * 110.78195 * 31.75947 * 10 9 7
12 12 C 1.54333 * 110.85255 * 268.69412 * 10 9 7
13 13 N 1.47023 * 107.26879 * 219.67787 * 12 10 9
14 14 C 1.36939 * 125.64945 * 178.84833 * 13 12 10
15 15 H 1.07997 * 119.99728 * 179.41145 * 14 13 12
16 16 C 1.38815 * 119.99845 * 359.69059 * 14 13 12
17 17 N 1.31619 * 119.99884 * 359.72042 * 16 14 13
18 18 Si 1.86798 * 119.99660 * 179.72678 * 16 14 13
19 19 H 1.48498 * 109.47416 * 59.99578 * 18 16 14
20 20 H 1.48508 * 109.46609 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.46903 * 299.99163 * 18 16 14
22 22 C 1.47419 * 108.70109 * 358.57834 * 13 12 10
23 23 C 1.54907 * 104.83203 * 24.36071 * 22 13 12
24 24 H 1.09001 * 111.00464 * 81.06554 * 23 22 13
25 25 C 1.53002 * 111.00504 * 204.91615 * 23 22 13
26 26 C 1.35362 * 126.38816 * 180.32032 * 2 1 3
27 27 C 1.50694 * 127.24808 * 359.97330 * 26 2 1
28 28 H 1.09002 * 109.47104 * 89.98195 * 1 2 3
29 29 H 1.09002 * 109.46938 * 209.97421 * 1 2 3
30 30 H 1.08997 * 109.47643 * 329.97685 * 1 2 3
31 31 H 0.97002 * 119.99556 * 0.02562 * 9 7 6
32 32 H 1.08997 * 109.99574 * 100.19551 * 12 10 9
33 33 H 1.09001 * 109.77592 * 339.02798 * 12 10 9
34 34 H 0.97000 * 119.99517 * 180.02562 * 17 16 14
35 35 H 1.09000 * 110.36612 * 143.20177 * 22 13 12
36 36 H 1.09004 * 110.36874 * 265.41109 * 22 13 12
37 37 H 1.08997 * 109.47509 * 58.54436 * 25 23 22
38 38 H 1.09004 * 109.47376 * 178.55013 * 25 23 22
39 39 H 1.09007 * 109.46764 * 298.54185 * 25 23 22
40 40 H 1.09009 * 109.46698 * 270.16073 * 27 26 2
41 41 H 1.08994 * 109.47672 * 30.16062 * 27 26 2
42 42 H 1.09002 * 109.47148 * 150.16763 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3080 1.0872 0.0000
4 1 1.9965 2.0058 0.0005
5 7 3.5420 0.7298 -0.0005
6 6 3.6320 -0.5853 -0.0015
7 6 4.8765 -1.3809 -0.0029
8 8 4.8214 -2.5953 -0.0041
9 7 6.0731 -0.7606 -0.0027
10 6 7.3072 -1.5498 -0.0047
11 1 7.1659 -2.4874 -0.5423
12 6 7.7887 -1.8202 1.4365
13 7 9.2534 -1.6924 1.4385
14 6 10.0655 -1.8354 2.5318
15 1 11.1353 -1.7311 2.4271
16 6 9.5141 -2.1201 3.7735
17 7 8.2102 -2.2472 3.9010
18 14 10.6225 -2.3227 5.2633
19 1 11.3841 -1.0679 5.4881
20 1 9.7943 -2.6198 6.4597
21 1 11.5702 -3.4413 5.0267
22 6 9.7035 -1.3913 0.0674
23 6 8.4779 -0.7366 -0.6175
24 1 8.4006 0.3183 -0.3545
25 6 8.5361 -0.9182 -2.1356
26 6 2.3100 -1.0897 -0.0061
27 6 1.8855 -2.5355 -0.0136
28 1 -0.3633 0.0003 -1.0277
29 1 -0.3633 -0.8902 0.5134
30 1 -0.3634 0.8897 0.5142
31 1 6.1170 0.2084 -0.0014
32 1 7.5040 -2.8270 1.7419
33 1 7.3518 -1.0873 2.1149
34 1 7.8249 -2.4458 4.7688
35 1 10.5429 -0.6963 0.0877
36 1 9.9841 -2.3088 -0.4499
37 1 8.5692 -1.9814 -2.3734
38 1 7.6511 -0.4718 -2.5891
39 1 9.4295 -0.4306 -2.5258
40 1 1.7807 -2.8888 1.0123
41 1 0.9304 -2.6312 -0.5301
42 1 2.6383 -3.1326 -0.5283
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001079498513.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:16:46
Heat of formation + Delta-G solvation = 27.613069 kcal
Electronic energy + Delta-G solvation = -23661.497323 eV
Core-core repulsion = 20256.405595 eV
Total energy + Delta-G solvation = -3405.091728 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.71632 -40.79167 -39.04931 -35.67481 -34.57617 -34.20947 -33.33010 -32.17109
-29.91173 -29.01376 -27.39752 -27.00739 -25.86061 -24.51685 -22.13884 -21.59624
-20.94210 -20.70234 -18.89413 -18.54874 -17.90798 -17.32480 -17.00151 -16.82919
-15.74180 -15.57482 -15.35861 -14.81400 -14.69404 -14.42940 -14.08759 -13.94322
-13.85891 -13.74607 -13.56935 -13.34520 -13.06103 -12.99025 -12.95511 -12.85398
-12.57237 -12.25275 -12.06471 -11.86675 -11.81154 -11.67315 -11.47505 -11.06789
-10.74213 -10.39161 -9.96145 -9.63268 -8.93303 -7.84344 -5.22967 0.50501
1.09181 1.43725 1.48600 1.54814 1.87709 2.23190 2.37505 2.50007
3.33466 3.36416 3.60607 3.74382 3.80714 4.04688 4.06374 4.09526
4.30170 4.36769 4.50160 4.61238 4.71162 4.80883 4.87609 4.89372
4.93454 5.03160 5.05152 5.07023 5.11137 5.17504 5.23276 5.27741
5.43877 5.48770 5.56486 5.60452 5.76924 6.14391 6.16007 6.50175
6.88401 7.05531 7.20708 7.75149 8.39662 9.24903
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017823 B = 0.004104 C = 0.003643
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1570.658668 B = 6820.314578 C = 7683.849802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.028 3.972
3 N -0.362 5.362
4 H 0.462 0.538
5 N -0.269 5.269
6 C -0.037 4.037
7 C 0.595 3.405
8 O -0.567 6.567
9 N -0.691 5.691
10 C 0.135 3.865
11 H 0.080 0.920
12 C 0.190 3.810
13 N -0.627 5.627
14 C -0.244 4.244
15 H 0.090 0.910
16 C -0.071 4.071
17 N -0.955 5.955
18 Si 0.983 3.017
19 H -0.272 1.272
20 H -0.297 1.297
21 H -0.275 1.275
22 C 0.134 3.866
23 C -0.095 4.095
24 H 0.087 0.913
25 C -0.128 4.128
26 C -0.176 4.176
27 C -0.074 4.074
28 H 0.098 0.902
29 H 0.092 0.908
30 H 0.095 0.905
31 H 0.411 0.589
32 H -0.008 1.008
33 H 0.014 0.986
34 H 0.244 0.756
35 H 0.057 0.943
36 H 0.029 0.971
37 H 0.053 0.947
38 H 0.064 0.936
39 H 0.079 0.921
40 H 0.060 0.940
41 H 0.094 0.906
42 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.926 9.328 -12.880 22.506
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.099 4.099
3 N -0.079 5.079
4 H 0.311 0.689
5 N -0.107 5.107
6 C -0.196 4.196
7 C 0.381 3.619
8 O -0.444 6.444
9 N -0.341 5.341
10 C 0.029 3.971
11 H 0.098 0.902
12 C 0.063 3.937
13 N -0.354 5.354
14 C -0.373 4.373
15 H 0.108 0.892
16 C -0.263 4.263
17 N -0.604 5.604
18 Si 0.811 3.189
19 H -0.197 1.197
20 H -0.224 1.224
21 H -0.201 1.201
22 C 0.009 3.991
23 C -0.115 4.115
24 H 0.106 0.894
25 C -0.185 4.185
26 C -0.186 4.186
27 C -0.131 4.131
28 H 0.116 0.884
29 H 0.111 0.889
30 H 0.114 0.886
31 H 0.248 0.752
32 H 0.010 0.990
33 H 0.032 0.968
34 H 0.053 0.947
35 H 0.075 0.925
36 H 0.047 0.953
37 H 0.072 0.928
38 H 0.083 0.917
39 H 0.098 0.902
40 H 0.079 0.921
41 H 0.113 0.887
42 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -15.267 9.356 -12.681 21.941
hybrid contribution 0.135 -0.241 1.404 1.431
sum -15.131 9.115 -11.277 20.957
Atomic orbital electron populations
1.20538 0.82920 1.05493 1.04924 1.21737 0.96959 0.85539 1.05622
1.43285 1.02016 1.10568 1.52051 0.68904 1.73445 1.03386 1.14037
1.19796 1.21692 0.94762 0.90459 1.12723 1.17322 0.82613 0.86407
0.75593 1.90734 1.87224 1.14504 1.51949 1.45632 1.04477 1.10601
1.73399 1.22145 0.83392 0.94968 0.96572 0.90219 1.21090 0.83878
0.96810 0.91928 1.44720 1.02473 1.83575 1.04631 1.19516 0.90388
1.40914 0.86491 0.89203 1.25768 0.97351 1.02326 1.00867 1.70254
1.10919 1.56122 1.23068 0.85087 0.77354 0.78414 0.78089 1.19743
1.22387 1.20101 1.21846 0.95900 0.97152 0.84231 1.22546 0.92903
0.99266 0.96751 0.89446 1.21640 1.02948 1.02158 0.91763 1.20429
0.90359 0.98144 1.09699 1.20130 1.01886 0.89013 1.02109 0.88380
0.88925 0.88633 0.75242 0.98957 0.96764 0.94675 0.92503 0.95331
0.92786 0.91702 0.90185 0.92107 0.88734 0.92682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.64 10.14 71.24 0.72 0.08 16
2 C 0.03 0.52 7.23 41.40 0.30 0.82 16
3 N -0.36 -6.66 6.83 -47.93 -0.33 -6.99 16
4 H 0.46 4.26 8.96 -220.00 -1.97 2.29 16
5 N -0.27 -7.45 11.92 -48.18 -0.57 -8.02 16
6 C -0.04 -1.24 7.13 42.46 0.30 -0.93 16
7 C 0.59 23.97 7.82 86.75 0.68 24.65 16
8 O -0.57 -26.51 14.76 -3.93 -0.06 -26.57 16
9 N -0.69 -26.27 5.10 -439.91 -2.25 -28.51 16
10 C 0.14 5.69 2.77 46.18 0.13 5.81 16
11 H 0.08 3.54 7.42 -2.39 -0.02 3.52 16
12 C 0.19 10.42 5.13 86.73 0.45 10.86 16
13 N -0.63 -34.13 3.39 -691.98 -2.35 -36.48 16
14 C -0.24 -14.29 10.28 84.03 0.86 -13.43 16
15 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16
16 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16
17 N -0.95 -61.81 10.31 21.65 0.22 -61.59 16
18 Si 0.98 47.75 29.55 68.60 2.03 49.78 16
19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
20 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16
21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16
22 C 0.13 5.55 6.70 86.86 0.58 6.13 16
23 C -0.09 -3.27 3.27 -9.40 -0.03 -3.30 16
24 H 0.09 2.86 8.01 -2.39 -0.02 2.84 16
25 C -0.13 -3.29 9.30 71.98 0.67 -2.62 16
26 C -0.18 -4.84 6.25 -19.73 -0.12 -4.96 16
27 C -0.07 -1.88 9.61 71.23 0.68 -1.20 16
28 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16
29 H 0.09 0.71 7.98 -2.39 -0.02 0.69 16
30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16
31 H 0.41 13.78 8.29 -92.71 -0.77 13.01 16
32 H -0.01 -0.51 7.53 -2.39 -0.02 -0.52 16
33 H 0.01 0.87 7.24 -2.39 -0.02 0.85 16
34 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16
35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
36 H 0.03 1.17 8.04 -2.38 -0.02 1.15 16
37 H 0.05 1.43 8.11 -2.39 -0.02 1.41 16
38 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16
39 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16
40 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16
41 H 0.09 1.63 8.00 -2.39 -0.02 1.61 16
42 H 0.05 1.72 6.72 -2.39 -0.02 1.71 16
Total: -1.00 -82.91 345.62 0.69 -82.22
By element:
Atomic # 1 Polarization: 19.70 SS G_CDS: -1.69 Total: 18.01 kcal
Atomic # 6 Polarization: 12.46 SS G_CDS: 5.69 Total: 18.15 kcal
Atomic # 7 Polarization: -136.31 SS G_CDS: -5.27 Total: -141.59 kcal
Atomic # 8 Polarization: -26.51 SS G_CDS: -0.06 Total: -26.57 kcal
Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal
Total: -82.91 0.69 -82.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079498513.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.829 kcal
(2) G-P(sol) polarization free energy of solvation -82.906 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.923 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.613 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds