Wall clock time and date at job start Tue Mar 31 2020 04:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30856 * 125.41994 * 2 1 4 4 C 1.33316 * 109.68422 * 179.78364 * 3 2 1 5 5 C 1.50704 * 126.10382 * 180.27473 * 4 3 2 6 6 C 1.36660 * 107.78910 * 0.37436 * 4 3 2 7 7 C 1.46760 * 126.84601 * 179.89484 * 6 4 3 8 8 O 1.21678 * 119.99976 * 359.71588 * 7 6 4 9 9 N 1.34778 * 119.99861 * 179.70756 * 7 6 4 10 10 C 1.46505 * 120.00087 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88132 * 37.42841 * 10 9 7 12 12 C 1.54908 * 111.00525 * 273.55331 * 10 9 7 13 13 N 1.47429 * 104.83070 * 204.87459 * 12 10 9 14 14 C 1.36931 * 125.64709 * 204.09032 * 13 12 10 15 15 H 1.08002 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00429 * 0.02562 * 14 13 12 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14 21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14 22 22 C 1.47023 * 108.69980 * 24.35768 * 13 12 10 23 23 C 1.54327 * 107.26742 * 358.58082 * 22 13 12 24 24 H 1.08999 * 110.51528 * 96.45574 * 23 22 13 25 25 C 1.52999 * 110.85377 * 219.67414 * 23 22 13 26 26 N 1.34490 * 125.41966 * 180.02562 * 2 1 3 27 27 H 0.97007 * 126.46928 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47621 * 269.98018 * 1 2 3 29 29 H 1.09004 * 109.46845 * 29.98116 * 1 2 3 30 30 H 1.08999 * 109.47222 * 149.97545 * 1 2 3 31 31 H 1.08998 * 109.47241 * 270.11677 * 5 4 3 32 32 H 1.08997 * 109.47276 * 30.12040 * 5 4 3 33 33 H 1.09000 * 109.46702 * 150.11632 * 5 4 3 34 34 H 0.96996 * 120.00455 * 0.02562 * 9 7 6 35 35 H 1.09000 * 110.36556 * 86.03673 * 12 10 9 36 36 H 1.08997 * 110.46134 * 323.75974 * 12 10 9 37 37 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.88037 * 118.13318 * 22 13 12 39 39 H 1.08998 * 109.87956 * 239.29392 * 22 13 12 40 40 H 1.08996 * 109.47525 * 173.69741 * 25 23 22 41 41 H 1.09002 * 109.47407 * 293.69648 * 25 23 22 42 42 H 1.09002 * 109.46779 * 53.69295 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 4.7335 1.6360 0.0122 6 6 3.5976 -0.6609 -0.0006 7 6 4.8028 -1.4983 -0.0004 8 8 5.9037 -0.9800 -0.0002 9 7 4.6902 -2.8413 -0.0002 10 6 5.8933 -3.6773 0.0007 11 1 6.6735 -3.2348 0.6200 12 6 6.4013 -3.9209 -1.4424 13 7 7.1582 -5.1838 -1.3679 14 6 8.1530 -5.5697 -2.2260 15 1 8.6487 -6.5191 -2.0862 16 6 8.5246 -4.7409 -3.2757 17 7 7.9209 -3.5837 -3.4458 18 14 9.8822 -5.2670 -4.4459 19 1 10.0876 -4.2132 -5.4717 20 1 11.1413 -5.4684 -3.6848 21 1 9.4973 -6.5377 -5.1111 22 6 6.6635 -5.9631 -0.2235 23 6 5.5677 -5.1217 0.4642 24 1 4.5796 -5.4245 0.1175 25 6 5.6675 -5.2371 1.9866 26 7 2.2865 -1.0960 -0.0005 27 1 1.9849 -2.0180 -0.0006 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8897 -0.5142 31 1 5.0224 1.8646 -1.0136 32 1 4.4678 2.5581 0.5289 33 1 5.5675 1.1586 0.5267 34 1 3.8126 -3.2545 -0.0006 35 1 7.0530 -3.1060 -1.7577 36 1 5.5615 -4.0219 -2.1299 37 1 8.1808 -3.0043 -4.1791 38 1 6.2450 -6.9075 -0.5713 39 1 7.4776 -6.1514 0.4764 40 1 4.9592 -4.5505 2.4503 41 1 5.4351 -6.2581 2.2896 42 1 6.6792 -4.9851 2.3045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080463277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:50 Heat of formation + Delta-G solvation = 38.508387 kcal Electronic energy + Delta-G solvation = -23731.614744 eV Core-core repulsion = 20326.995472 eV Total energy + Delta-G solvation = -3404.619272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29081 -39.29444 -37.46345 -34.22293 -33.33795 -32.69324 -32.04826 -30.39444 -29.19182 -28.10986 -26.28142 -25.61188 -23.70375 -21.90451 -21.16259 -20.25004 -20.02084 -19.42523 -18.17732 -16.95046 -15.91638 -15.86689 -15.76650 -14.94044 -14.35798 -14.19614 -13.87778 -13.74056 -13.23367 -13.13768 -12.98783 -12.95818 -12.60932 -12.54420 -12.44034 -12.25922 -11.97149 -11.76625 -11.27311 -11.11105 -10.77890 -10.68132 -10.43721 -10.36432 -10.02820 -10.01292 -9.80108 -9.77480 -9.57180 -8.65869 -8.63418 -8.28251 -6.85219 -5.63102 -3.07490 1.33858 2.76148 2.79260 3.36740 3.42137 3.46022 3.48069 3.55364 4.15250 4.49546 4.70880 4.93400 5.05207 5.09343 5.17913 5.24457 5.32245 5.37310 5.52702 5.54892 5.68643 5.73192 5.88954 5.94334 5.96966 6.05574 6.08678 6.18978 6.19948 6.32243 6.42254 6.61767 6.64429 6.72173 6.88436 7.11871 7.41332 7.60328 7.71477 7.88434 7.94216 8.36909 8.47541 9.21091 9.82443 10.45150 11.39608 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004172 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.222420 B = 6710.416197 C = 7527.429712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.232 3.768 3 N -0.496 5.496 4 C 0.094 3.906 5 C -0.077 4.077 6 C -0.084 4.084 7 C 0.591 3.409 8 O -0.512 6.512 9 N -0.713 5.713 10 C 0.122 3.878 11 H 0.093 0.907 12 C 0.149 3.851 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.917 5.917 18 Si 0.915 3.085 19 H -0.289 1.289 20 H -0.284 1.284 21 H -0.286 1.286 22 C 0.142 3.858 23 C -0.111 4.111 24 H 0.071 0.929 25 C -0.137 4.137 26 N -0.553 5.553 27 H 0.419 0.581 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.386 0.614 35 H 0.114 0.886 36 H 0.011 0.989 37 H 0.254 0.746 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 3.431 9.898 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.031 4.031 3 N -0.217 5.217 4 C -0.039 4.039 5 C -0.134 4.134 6 C -0.199 4.199 7 C 0.377 3.623 8 O -0.387 6.387 9 N -0.363 5.363 10 C 0.017 3.983 11 H 0.111 0.889 12 C 0.023 3.977 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.565 5.565 18 Si 0.746 3.254 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.212 1.212 22 C 0.015 3.985 23 C -0.131 4.131 24 H 0.090 0.910 25 C -0.195 4.195 26 N -0.159 5.159 27 H 0.258 0.742 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.218 0.782 35 H 0.132 0.868 36 H 0.029 0.971 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.572 4.688 9.699 18.121 hybrid contribution 0.136 -1.965 -0.747 2.107 sum -14.436 2.722 8.951 17.203 Atomic orbital electron populations 1.20270 0.84404 1.04462 1.03830 1.23340 0.95710 0.81622 1.02475 1.70062 1.01763 1.28274 1.21622 1.21056 0.93014 0.90414 0.99459 1.20295 0.93058 0.96828 1.03267 1.21100 0.83703 0.95614 1.19492 1.16755 0.86827 0.81604 0.77122 1.90856 1.25592 1.72764 1.49465 1.45778 1.09598 1.05544 1.75375 1.22735 0.85726 0.88180 1.01676 0.88902 1.22233 0.95272 0.91677 0.88504 1.44381 1.40841 1.17268 1.30401 1.19010 1.09716 1.02272 1.04818 0.90375 1.24825 0.99888 0.96767 0.98927 1.69790 1.43534 1.10675 1.32478 0.86147 0.81577 0.77283 0.80435 1.21518 1.21054 1.21238 1.21334 0.93380 0.93749 0.90012 1.22426 0.99701 0.95709 0.95255 0.91026 1.21743 1.01935 1.00956 0.94857 1.43161 1.06157 1.09995 1.56547 0.74230 0.89782 0.88773 0.90490 0.90606 0.91350 0.89108 0.78161 0.86803 0.97080 0.93534 0.95890 0.95388 0.93219 0.92810 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.51 36.01 0.38 -0.07 16 2 C 0.23 2.59 8.12 -155.62 -1.26 1.33 16 3 N -0.50 -7.18 11.20 -6.85 -0.08 -7.25 16 4 C 0.09 1.47 7.15 -82.52 -0.59 0.88 16 5 C -0.08 -1.11 9.88 36.01 0.36 -0.75 16 6 C -0.08 -1.26 7.08 -82.15 -0.58 -1.84 16 7 C 0.59 10.36 7.79 -12.82 -0.10 10.26 16 8 O -0.51 -10.90 14.56 5.21 0.08 -10.82 16 9 N -0.71 -11.23 5.23 -53.01 -0.28 -11.51 16 10 C 0.12 2.32 2.76 -65.78 -0.18 2.14 16 11 H 0.09 1.95 7.63 -51.93 -0.40 1.56 16 12 C 0.15 3.69 5.58 -2.53 -0.01 3.67 16 13 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 14 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 18 Si 0.92 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.14 2.88 6.85 -3.06 -0.02 2.86 16 23 C -0.11 -1.81 3.16 -88.79 -0.28 -2.09 16 24 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 25 C -0.14 -1.81 9.16 37.16 0.34 -1.47 16 26 N -0.55 -6.04 6.07 -7.02 -0.04 -6.08 16 27 H 0.42 3.09 8.32 -40.82 -0.34 2.75 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.41 6.49 -51.93 -0.34 1.07 16 34 H 0.39 4.67 7.76 -40.82 -0.32 4.36 16 35 H 0.11 3.33 5.87 -51.93 -0.31 3.03 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -35.00 344.54 -8.66 -43.66 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.28 Total: 4.53 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -2.21 Total: 7.98 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -0.41 Total: -67.90 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.00 -8.66 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080463277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.167 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds