Wall clock time and date at job start Tue Mar 31 2020 04:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30856 * 125.41994 * 2 1 4 4 C 1.33316 * 109.68422 * 179.78364 * 3 2 1 5 5 C 1.50704 * 126.10382 * 180.27473 * 4 3 2 6 6 C 1.36660 * 107.78910 * 0.37436 * 4 3 2 7 7 C 1.46760 * 126.84601 * 179.89484 * 6 4 3 8 8 O 1.21678 * 119.99976 * 359.71588 * 7 6 4 9 9 N 1.34778 * 119.99861 * 179.70756 * 7 6 4 10 10 C 1.46505 * 120.00087 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88132 * 37.42841 * 10 9 7 12 12 C 1.54908 * 111.00525 * 273.55331 * 10 9 7 13 13 N 1.47429 * 104.83070 * 204.87459 * 12 10 9 14 14 C 1.36931 * 125.64709 * 204.09032 * 13 12 10 15 15 H 1.08002 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00429 * 0.02562 * 14 13 12 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14 21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14 22 22 C 1.47023 * 108.69980 * 24.35768 * 13 12 10 23 23 C 1.54327 * 107.26742 * 358.58082 * 22 13 12 24 24 H 1.08999 * 110.51528 * 96.45574 * 23 22 13 25 25 C 1.52999 * 110.85377 * 219.67414 * 23 22 13 26 26 N 1.34490 * 125.41966 * 180.02562 * 2 1 3 27 27 H 0.97007 * 126.46928 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47621 * 269.98018 * 1 2 3 29 29 H 1.09004 * 109.46845 * 29.98116 * 1 2 3 30 30 H 1.08999 * 109.47222 * 149.97545 * 1 2 3 31 31 H 1.08998 * 109.47241 * 270.11677 * 5 4 3 32 32 H 1.08997 * 109.47276 * 30.12040 * 5 4 3 33 33 H 1.09000 * 109.46702 * 150.11632 * 5 4 3 34 34 H 0.96996 * 120.00455 * 0.02562 * 9 7 6 35 35 H 1.09000 * 110.36556 * 86.03673 * 12 10 9 36 36 H 1.08997 * 110.46134 * 323.75974 * 12 10 9 37 37 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.88037 * 118.13318 * 22 13 12 39 39 H 1.08998 * 109.87956 * 239.29392 * 22 13 12 40 40 H 1.08996 * 109.47525 * 173.69741 * 25 23 22 41 41 H 1.09002 * 109.47407 * 293.69648 * 25 23 22 42 42 H 1.09002 * 109.46779 * 53.69295 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0047 5 6 4.7335 1.6360 0.0122 6 6 3.5976 -0.6609 -0.0006 7 6 4.8028 -1.4983 -0.0004 8 8 5.9037 -0.9800 -0.0002 9 7 4.6902 -2.8413 -0.0002 10 6 5.8933 -3.6773 0.0007 11 1 6.6735 -3.2348 0.6200 12 6 6.4013 -3.9209 -1.4424 13 7 7.1582 -5.1838 -1.3679 14 6 8.1530 -5.5697 -2.2260 15 1 8.6487 -6.5191 -2.0862 16 6 8.5246 -4.7409 -3.2757 17 7 7.9209 -3.5837 -3.4458 18 14 9.8822 -5.2670 -4.4459 19 1 10.0876 -4.2132 -5.4717 20 1 11.1413 -5.4684 -3.6848 21 1 9.4973 -6.5377 -5.1111 22 6 6.6635 -5.9631 -0.2235 23 6 5.5677 -5.1217 0.4642 24 1 4.5796 -5.4245 0.1175 25 6 5.6675 -5.2371 1.9866 26 7 2.2865 -1.0960 -0.0005 27 1 1.9849 -2.0180 -0.0006 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8897 -0.5142 31 1 5.0224 1.8646 -1.0136 32 1 4.4678 2.5581 0.5289 33 1 5.5675 1.1586 0.5267 34 1 3.8126 -3.2545 -0.0006 35 1 7.0530 -3.1060 -1.7577 36 1 5.5615 -4.0219 -2.1299 37 1 8.1808 -3.0043 -4.1791 38 1 6.2450 -6.9075 -0.5713 39 1 7.4776 -6.1514 0.4764 40 1 4.9592 -4.5505 2.4503 41 1 5.4351 -6.2581 2.2896 42 1 6.6792 -4.9851 2.3045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080463277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:49 Heat of formation + Delta-G solvation = 12.949526 kcal Electronic energy + Delta-G solvation = -23732.723059 eV Core-core repulsion = 20326.995472 eV Total energy + Delta-G solvation = -3405.727587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.32143 -40.76984 -39.07148 -35.81885 -34.71616 -34.07490 -33.05887 -32.17831 -30.07343 -29.74962 -27.70109 -27.15257 -25.33566 -23.26565 -22.27857 -21.67364 -21.62860 -20.65231 -19.34261 -18.94369 -17.42971 -17.15283 -16.85780 -16.74007 -15.76802 -15.64326 -15.46316 -14.86870 -14.55028 -14.43634 -14.27704 -14.06483 -13.95329 -13.91123 -13.40979 -13.28557 -13.22631 -13.07113 -13.03313 -12.83205 -12.59656 -12.27506 -12.07140 -11.84928 -11.70241 -11.52764 -11.43130 -11.03763 -10.94009 -10.77658 -10.15993 -9.40712 -8.92511 -7.78752 -5.25909 0.21040 1.43690 1.47909 1.54497 1.73277 1.80223 2.07579 2.24294 2.48446 3.30505 3.30938 3.59270 3.67435 3.82870 3.98142 4.01943 4.06309 4.14244 4.47326 4.54393 4.58889 4.62458 4.70494 4.75824 4.79715 4.86825 4.96818 5.01034 5.02529 5.06827 5.13280 5.18923 5.23862 5.42533 5.47588 5.53843 5.57904 5.78577 6.25814 6.30422 6.46143 6.88568 7.04571 7.14067 7.74908 8.36944 9.21401 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004172 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.222420 B = 6710.416197 C = 7527.429712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.253 3.747 3 N -0.527 5.527 4 C 0.080 3.920 5 C -0.075 4.075 6 C -0.105 4.105 7 C 0.590 3.410 8 O -0.560 6.560 9 N -0.697 5.697 10 C 0.139 3.861 11 H 0.070 0.930 12 C 0.157 3.843 13 N -0.626 5.626 14 C -0.243 4.243 15 H 0.087 0.913 16 C -0.069 4.069 17 N -0.949 5.949 18 Si 0.982 3.018 19 H -0.297 1.297 20 H -0.275 1.275 21 H -0.273 1.273 22 C 0.133 3.867 23 C -0.092 4.092 24 H 0.099 0.901 25 C -0.130 4.130 26 N -0.538 5.538 27 H 0.437 0.563 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.408 0.592 35 H 0.062 0.938 36 H -0.012 1.012 37 H 0.244 0.756 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 1.870 11.228 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 N -0.249 5.249 4 C -0.054 4.054 5 C -0.132 4.132 6 C -0.220 4.220 7 C 0.378 3.622 8 O -0.438 6.438 9 N -0.348 5.348 10 C 0.033 3.967 11 H 0.088 0.912 12 C 0.030 3.970 13 N -0.353 5.353 14 C -0.372 4.372 15 H 0.105 0.895 16 C -0.261 4.261 17 N -0.598 5.598 18 Si 0.810 3.190 19 H -0.223 1.223 20 H -0.201 1.201 21 H -0.199 1.199 22 C 0.008 3.992 23 C -0.111 4.111 24 H 0.117 0.883 25 C -0.187 4.187 26 N -0.145 5.145 27 H 0.280 0.720 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.080 0.920 36 H 0.006 0.994 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.328 3.050 11.066 20.785 hybrid contribution 0.884 -1.470 -1.147 2.064 sum -16.444 1.580 9.919 19.269 Atomic orbital electron populations 1.20563 0.80443 1.06101 1.05737 1.24341 0.97496 0.80678 0.98651 1.70092 1.01344 1.29938 1.23506 1.21274 0.93862 0.90885 0.99422 1.20235 0.92654 0.97468 1.02884 1.20601 0.84429 0.95109 1.21898 1.17108 0.87084 0.82019 0.76033 1.90833 1.27715 1.73675 1.51600 1.45486 1.09688 1.04882 1.74742 1.22205 0.86538 0.90517 0.97435 0.91173 1.21871 0.93433 0.90051 0.91605 1.44682 1.40705 1.18428 1.31471 1.19467 1.10160 1.02438 1.05120 0.89546 1.25721 1.02498 0.96924 1.00988 1.70118 1.45174 1.11832 1.32723 0.85100 0.78927 0.76910 0.78103 1.22284 1.20133 1.19911 1.21614 0.94755 0.94279 0.88592 1.22375 0.99482 0.91935 0.97338 0.88318 1.21700 1.01961 1.03183 0.91861 1.43032 1.04422 1.11159 1.55873 0.72043 0.87548 0.88383 0.87590 0.91169 0.89617 0.90827 0.75603 0.91974 0.99399 0.94608 0.94796 0.95020 0.91229 0.90160 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.51 71.24 0.75 0.17 16 2 C 0.25 4.97 8.12 138.20 1.12 6.09 16 3 N -0.53 -14.62 11.20 -175.57 -1.97 -16.59 16 4 C 0.08 2.51 7.15 41.97 0.30 2.81 16 5 C -0.07 -2.26 9.88 71.24 0.70 -1.56 16 6 C -0.10 -3.12 7.08 40.01 0.28 -2.83 16 7 C 0.59 21.17 7.79 86.47 0.67 21.85 16 8 O -0.56 -25.33 14.56 -4.28 -0.06 -25.40 16 9 N -0.70 -21.63 5.23 -439.84 -2.30 -23.93 16 10 C 0.14 5.34 2.76 46.38 0.13 5.47 16 11 H 0.07 3.05 7.63 -2.39 -0.02 3.03 16 12 C 0.16 8.09 5.58 86.85 0.48 8.58 16 13 N -0.63 -32.85 3.39 -691.98 -2.35 -35.20 16 14 C -0.24 -13.93 10.27 84.03 0.86 -13.07 16 15 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 16 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 17 N -0.95 -59.86 10.09 21.65 0.22 -59.64 16 18 Si 0.98 47.06 29.55 68.60 2.03 49.08 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.13 5.24 6.85 86.73 0.59 5.83 16 23 C -0.09 -2.78 3.16 -9.61 -0.03 -2.81 16 24 H 0.10 2.50 8.00 -2.39 -0.02 2.48 16 25 C -0.13 -2.96 9.16 71.98 0.66 -2.30 16 26 N -0.54 -10.49 6.07 -176.12 -1.07 -11.56 16 27 H 0.44 4.95 8.32 -92.70 -0.77 4.18 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.47 6.49 -2.39 -0.02 2.45 16 34 H 0.41 8.95 7.76 -92.71 -0.72 8.23 16 35 H 0.06 3.89 5.87 -2.39 -0.01 3.87 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.24 15.14 8.31 -92.70 -0.77 14.37 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.03 1.23 7.77 -2.39 -0.02 1.22 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 Total: -1.00 -82.09 344.54 1.05 -81.04 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.44 Total: 17.55 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 7.00 Total: 24.64 kcal Atomic # 7 Polarization: -139.46 SS G_CDS: -7.47 Total: -146.92 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -82.09 1.05 -81.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080463277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.992 kcal (2) G-P(sol) polarization free energy of solvation -82.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds