Wall clock time and date at job start Tue Mar 31 2020 04:04:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.35357 * 126.38449 * 2 1
4 4 C 1.41503 * 105.50369 * 180.02562 * 3 2 1
5 5 C 1.47710 * 126.51854 * 180.02562 * 4 3 2
6 6 O 1.21579 * 119.99962 * 359.97438 * 5 4 3
7 7 N 1.34774 * 120.00239 * 179.97438 * 5 4 3
8 8 C 1.46501 * 119.99987 * 179.97438 * 7 5 4
9 9 H 1.08994 * 109.47152 * 35.00375 * 8 7 5
10 10 C 1.52996 * 109.47264 * 274.99912 * 8 7 5
11 11 C 1.52998 * 109.47048 * 180.02562 * 10 8 7
12 12 C 1.52998 * 109.47292 * 60.00174 * 11 10 8
13 13 C 1.52996 * 109.47270 * 300.00068 * 12 11 10
14 14 C 1.52998 * 109.47019 * 59.99765 * 13 12 11
15 15 H 1.09000 * 109.47516 * 59.99967 * 14 13 12
16 16 N 1.46506 * 109.47262 * 180.02562 * 14 13 12
17 17 C 1.36938 * 119.99589 * 275.00203 * 16 14 13
18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 14
19 19 C 1.38815 * 119.99408 * 179.97438 * 17 16 14
20 20 N 1.31617 * 120.00325 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 119.99550 * 179.97438 * 19 17 16
22 22 H 1.48493 * 109.47397 * 90.00455 * 21 19 17
23 23 H 1.48510 * 109.46813 * 210.00284 * 21 19 17
24 24 H 1.48495 * 109.47179 * 329.99902 * 21 19 17
25 25 N 1.31803 * 106.96239 * 0.26419 * 4 3 2
26 26 N 1.28468 * 110.07581 * 359.55918 * 25 4 3
27 27 H 0.96994 * 124.88647 * 180.20921 * 26 25 4
28 28 H 1.08999 * 109.47181 * 89.99968 * 1 2 3
29 29 H 1.09005 * 109.46910 * 209.99265 * 1 2 3
30 30 H 1.09000 * 109.47285 * 329.99422 * 1 2 3
31 31 H 1.08002 * 127.25052 * 0.02656 * 3 2 1
32 32 H 0.96997 * 119.99964 * 359.97438 * 7 5 4
33 33 H 1.09001 * 109.46909 * 60.00421 * 10 8 7
34 34 H 1.08994 * 109.47414 * 300.00303 * 10 8 7
35 35 H 1.09007 * 109.47327 * 300.00144 * 11 10 8
36 36 H 1.09002 * 109.47121 * 180.02562 * 11 10 8
37 37 H 1.09007 * 109.47213 * 179.97438 * 12 11 10
38 38 H 1.09002 * 109.47283 * 60.00068 * 12 11 10
39 39 H 1.09002 * 109.46968 * 300.00193 * 13 12 11
40 40 H 1.09001 * 109.47247 * 179.97438 * 13 12 11
41 41 H 0.96995 * 120.00050 * 94.72411 * 16 14 13
42 42 H 0.97000 * 119.99693 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3099 1.0897 0.0000
4 6 3.6320 0.5853 -0.0006
5 6 4.8764 1.3812 -0.0003
6 8 4.8212 2.5957 0.0001
7 7 6.0730 0.7610 -0.0005
8 6 7.3072 1.5504 -0.0007
9 1 7.1598 2.4553 0.5887
10 6 7.6688 1.9310 -1.4378
11 6 8.9581 2.7548 -1.4381
12 6 10.0920 1.9278 -0.8288
13 6 9.7303 1.5471 0.6083
14 6 8.4411 0.7233 0.6085
15 1 8.5880 -0.1817 0.0190
16 7 8.0944 0.3593 1.9847
17 6 8.6499 -0.7526 2.5593
18 1 9.3432 -1.3614 1.9980
19 6 8.3218 -1.0972 3.8634
20 7 7.4765 -0.3555 4.5473
21 14 9.0791 -2.6144 4.6471
22 1 10.3447 -2.2406 5.3279
23 1 8.1324 -3.1835 5.6399
24 1 9.3618 -3.6253 3.5968
25 7 3.5420 -0.7296 -0.0067
26 7 2.3081 -1.0871 -0.0007
27 1 1.9966 -2.0057 -0.0005
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 -0.8901 0.5137
30 1 -0.3634 0.8899 0.5139
31 1 2.0056 2.1260 0.0004
32 1 6.1170 -0.2080 -0.0004
33 1 6.8609 2.5198 -1.8720
34 1 7.8162 1.0260 -2.0272
35 1 8.8111 3.6598 -0.8485
36 1 9.2155 3.0263 -2.4619
37 1 11.0106 2.5146 -0.8294
38 1 10.2390 1.0228 -1.4183
39 1 9.5833 2.4521 1.1978
40 1 10.5379 0.9576 1.0422
41 1 7.4746 0.9081 2.4900
42 1 7.2476 -0.5962 5.4586
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001085142403.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:04:12
Heat of formation + Delta-G solvation = 28.847841 kcal
Electronic energy + Delta-G solvation = -23700.974172 eV
Core-core repulsion = 20295.935988 eV
Total energy + Delta-G solvation = -3405.038184 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.57800 -39.43022 -37.59924 -33.97919 -33.67683 -32.72783 -31.77377 -31.07742
-29.22773 -27.69695 -27.01124 -24.13595 -23.61750 -21.65291 -21.18934 -20.96633
-19.84678 -19.12426 -17.64393 -17.17161 -16.50389 -15.78909 -15.72316 -14.90444
-14.34160 -14.11459 -13.85719 -13.76821 -13.61158 -13.36688 -13.25164 -13.08555
-12.88557 -12.63907 -12.34553 -12.06600 -12.00110 -11.03501 -10.87538 -10.79542
-10.73912 -10.68718 -10.51665 -10.27591 -10.12577 -9.76802 -9.61431 -9.54326
-9.28939 -8.92039 -8.86835 -8.45471 -6.92804 -5.72667 -3.01958 1.77402
2.17151 2.88152 3.44288 3.49377 3.51036 3.61425 3.80884 4.58075
4.60106 4.63637 4.90409 5.13816 5.21250 5.24371 5.31499 5.52881
5.57569 5.58537 5.61567 5.68285 5.78720 5.88858 5.92313 5.97109
6.02862 6.04842 6.18012 6.40494 6.44165 6.52097 6.56065 6.58722
6.64752 6.92489 6.96659 7.01296 7.17022 7.72200 7.84145 8.14453
8.44410 8.67780 9.56108 10.13321 10.48540 11.49437
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.010722 B = 0.005614 C = 0.003933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2610.918595 B = 4986.641470 C = 7117.794833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 C 0.005 3.995
3 C -0.180 4.180
4 C -0.003 4.003
5 C 0.603 3.397
6 O -0.544 6.544
7 N -0.692 5.692
8 C 0.140 3.860
9 H 0.085 0.915
10 C -0.124 4.124
11 C -0.113 4.113
12 C -0.119 4.119
13 C -0.133 4.133
14 C 0.173 3.827
15 H 0.051 0.949
16 N -0.721 5.721
17 C -0.238 4.238
18 H 0.070 0.930
19 C -0.011 4.011
20 N -0.929 5.929
21 Si 0.904 3.096
22 H -0.291 1.291
23 H -0.293 1.293
24 H -0.282 1.282
25 N -0.251 5.251
26 N -0.383 5.383
27 H 0.443 0.557
28 H 0.076 0.924
29 H 0.069 0.931
30 H 0.085 0.915
31 H 0.161 0.839
32 H 0.409 0.591
33 H 0.063 0.937
34 H 0.061 0.939
35 H 0.062 0.938
36 H 0.057 0.943
37 H 0.054 0.946
38 H 0.057 0.943
39 H 0.057 0.943
40 H 0.065 0.935
41 H 0.385 0.615
42 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.874 1.025 -13.276 16.577
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.120 4.120
3 C -0.208 4.208
4 C -0.164 4.164
5 C 0.387 3.613
6 O -0.421 6.421
7 N -0.341 5.341
8 C 0.035 3.965
9 H 0.104 0.896
10 C -0.163 4.163
11 C -0.151 4.151
12 C -0.158 4.158
13 C -0.174 4.174
14 C 0.063 3.937
15 H 0.069 0.931
16 N -0.362 5.362
17 C -0.369 4.369
18 H 0.088 0.912
19 C -0.207 4.207
20 N -0.577 5.577
21 Si 0.735 3.265
22 H -0.218 1.218
23 H -0.219 1.219
24 H -0.208 1.208
25 N -0.086 5.086
26 N -0.098 5.098
27 H 0.287 0.713
28 H 0.095 0.905
29 H 0.088 0.912
30 H 0.104 0.896
31 H 0.178 0.822
32 H 0.245 0.755
33 H 0.082 0.918
34 H 0.080 0.920
35 H 0.081 0.919
36 H 0.076 0.924
37 H 0.073 0.927
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.084 0.916
41 H 0.219 0.781
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -9.154 0.798 -13.208 16.089
hybrid contribution -0.396 -0.989 0.855 1.366
sum -9.550 -0.191 -12.353 15.615
Atomic orbital electron populations
1.20321 0.86740 1.03915 1.03099 1.21419 0.95281 0.87327 1.08019
1.21504 0.90602 0.99615 1.09055 1.22039 0.95400 0.89675 1.09299
1.16850 0.81815 0.86328 0.76345 1.90751 1.86920 1.12905 1.51480
1.45760 1.04655 1.11101 1.72561 1.21348 0.83715 0.95535 0.95901
0.89643 1.21879 0.97605 1.00044 0.96811 1.21470 0.94702 0.98690
1.00267 1.21582 0.97378 0.99362 0.97432 1.22220 0.99836 1.00652
0.94662 1.20465 0.90650 0.94775 0.87859 0.93139 1.42413 1.53894
1.30531 1.09331 1.19203 1.20388 1.01653 0.95684 0.91215 1.24725
0.99895 0.99048 0.97072 1.69678 1.37471 1.39830 1.10764 0.86238
0.78297 0.82840 0.79077 1.21799 1.21947 1.20822 1.73630 1.01232
1.15205 1.18570 1.43310 1.03055 1.09424 1.53966 0.71333 0.90489
0.91203 0.89584 0.82182 0.75541 0.91842 0.92020 0.91922 0.92412
0.92711 0.92409 0.92410 0.91617 0.78107 0.93605
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.53 10.44 36.01 0.38 -0.16 16
2 C 0.00 0.06 7.23 -82.21 -0.59 -0.54 16
3 C -0.18 -2.57 10.73 -39.37 -0.42 -2.99 16
4 C 0.00 -0.05 7.13 -82.77 -0.59 -0.64 16
5 C 0.60 11.58 7.79 -12.39 -0.10 11.48 16
6 O -0.54 -11.55 16.59 5.30 0.09 -11.47 16
7 N -0.69 -12.80 4.90 -54.79 -0.27 -13.06 16
8 C 0.14 2.54 1.98 -67.93 -0.13 2.41 16
9 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16
10 C -0.12 -1.87 5.49 -26.73 -0.15 -2.02 16
11 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16
12 C -0.12 -1.69 5.92 -26.73 -0.16 -1.84 16
13 C -0.13 -2.37 5.50 -26.73 -0.15 -2.51 16
14 C 0.17 3.41 2.29 -67.92 -0.16 3.26 16
15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16
16 N -0.72 -17.92 4.95 -53.42 -0.26 -18.19 16
17 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16
18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16
20 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16
21 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16
22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
25 N -0.25 -3.96 11.92 33.42 0.40 -3.56 16
26 N -0.38 -4.47 6.83 33.50 0.23 -4.24 16
27 H 0.44 3.43 8.96 -190.45 -1.71 1.72 16
28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16
32 H 0.41 7.60 8.33 -40.82 -0.34 7.26 16
33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
35 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16
36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16
41 H 0.39 10.58 7.80 -40.82 -0.32 10.26 16
42 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16
LS Contribution 349.49 15.07 5.27 5.27
Total: -1.00 -33.58 349.49 -9.12 -42.70
By element:
Atomic # 1 Polarization: 22.92 SS G_CDS: -7.80 Total: 15.12 kcal
Atomic # 6 Polarization: 0.14 SS G_CDS: -2.47 Total: -2.33 kcal
Atomic # 7 Polarization: -67.54 SS G_CDS: 0.82 Total: -66.72 kcal
Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal
Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -33.58 -9.12 -42.70 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085142403.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.549 kcal
(2) G-P(sol) polarization free energy of solvation -33.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds