Wall clock time and date at job start Tue Mar 31 2020 04:04:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.35357 * 126.38449 * 2 1
4 4 C 1.41503 * 105.50369 * 180.02562 * 3 2 1
5 5 C 1.47710 * 126.51854 * 180.02562 * 4 3 2
6 6 O 1.21579 * 119.99962 * 359.97438 * 5 4 3
7 7 N 1.34774 * 120.00239 * 179.97438 * 5 4 3
8 8 C 1.46501 * 119.99987 * 179.97438 * 7 5 4
9 9 H 1.08994 * 109.47152 * 35.00375 * 8 7 5
10 10 C 1.52996 * 109.47264 * 274.99912 * 8 7 5
11 11 C 1.52998 * 109.47048 * 180.02562 * 10 8 7
12 12 C 1.52998 * 109.47292 * 60.00174 * 11 10 8
13 13 C 1.52996 * 109.47270 * 300.00068 * 12 11 10
14 14 C 1.52998 * 109.47019 * 59.99765 * 13 12 11
15 15 H 1.09000 * 109.47516 * 59.99967 * 14 13 12
16 16 N 1.46506 * 109.47262 * 180.02562 * 14 13 12
17 17 C 1.36938 * 119.99589 * 275.00203 * 16 14 13
18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 14
19 19 C 1.38815 * 119.99408 * 179.97438 * 17 16 14
20 20 N 1.31617 * 120.00325 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 119.99550 * 179.97438 * 19 17 16
22 22 H 1.48493 * 109.47397 * 90.00455 * 21 19 17
23 23 H 1.48510 * 109.46813 * 210.00284 * 21 19 17
24 24 H 1.48495 * 109.47179 * 329.99902 * 21 19 17
25 25 N 1.31803 * 106.96239 * 0.26419 * 4 3 2
26 26 N 1.28468 * 110.07581 * 359.55918 * 25 4 3
27 27 H 0.96994 * 124.88647 * 180.20921 * 26 25 4
28 28 H 1.08999 * 109.47181 * 89.99968 * 1 2 3
29 29 H 1.09005 * 109.46910 * 209.99265 * 1 2 3
30 30 H 1.09000 * 109.47285 * 329.99422 * 1 2 3
31 31 H 1.08002 * 127.25052 * 0.02656 * 3 2 1
32 32 H 0.96997 * 119.99964 * 359.97438 * 7 5 4
33 33 H 1.09001 * 109.46909 * 60.00421 * 10 8 7
34 34 H 1.08994 * 109.47414 * 300.00303 * 10 8 7
35 35 H 1.09007 * 109.47327 * 300.00144 * 11 10 8
36 36 H 1.09002 * 109.47121 * 180.02562 * 11 10 8
37 37 H 1.09007 * 109.47213 * 179.97438 * 12 11 10
38 38 H 1.09002 * 109.47283 * 60.00068 * 12 11 10
39 39 H 1.09002 * 109.46968 * 300.00193 * 13 12 11
40 40 H 1.09001 * 109.47247 * 179.97438 * 13 12 11
41 41 H 0.96995 * 120.00050 * 94.72411 * 16 14 13
42 42 H 0.97000 * 119.99693 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3099 1.0897 0.0000
4 6 3.6320 0.5853 -0.0006
5 6 4.8764 1.3812 -0.0003
6 8 4.8212 2.5957 0.0001
7 7 6.0730 0.7610 -0.0005
8 6 7.3072 1.5504 -0.0007
9 1 7.1598 2.4553 0.5887
10 6 7.6688 1.9310 -1.4378
11 6 8.9581 2.7548 -1.4381
12 6 10.0920 1.9278 -0.8288
13 6 9.7303 1.5471 0.6083
14 6 8.4411 0.7233 0.6085
15 1 8.5880 -0.1817 0.0190
16 7 8.0944 0.3593 1.9847
17 6 8.6499 -0.7526 2.5593
18 1 9.3432 -1.3614 1.9980
19 6 8.3218 -1.0972 3.8634
20 7 7.4765 -0.3555 4.5473
21 14 9.0791 -2.6144 4.6471
22 1 10.3447 -2.2406 5.3279
23 1 8.1324 -3.1835 5.6399
24 1 9.3618 -3.6253 3.5968
25 7 3.5420 -0.7296 -0.0067
26 7 2.3081 -1.0871 -0.0007
27 1 1.9966 -2.0057 -0.0005
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 -0.8901 0.5137
30 1 -0.3634 0.8899 0.5139
31 1 2.0056 2.1260 0.0004
32 1 6.1170 -0.2080 -0.0004
33 1 6.8609 2.5198 -1.8720
34 1 7.8162 1.0260 -2.0272
35 1 8.8111 3.6598 -0.8485
36 1 9.2155 3.0263 -2.4619
37 1 11.0106 2.5146 -0.8294
38 1 10.2390 1.0228 -1.4183
39 1 9.5833 2.4521 1.1978
40 1 10.5379 0.9576 1.0422
41 1 7.4746 0.9081 2.4900
42 1 7.2476 -0.5962 5.4586
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001085142403.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:04:11
Heat of formation + Delta-G solvation = 4.350211 kcal
Electronic energy + Delta-G solvation = -23702.036469 eV
Core-core repulsion = 20295.935988 eV
Total energy + Delta-G solvation = -3406.100481 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-43.65548 -40.91452 -39.08688 -35.81748 -35.15891 -33.63966 -33.00835 -32.87273
-30.59767 -29.35503 -27.85631 -25.77256 -25.26453 -23.04979 -22.45337 -22.20451
-21.27600 -20.51693 -19.16713 -18.63180 -17.93872 -17.20421 -16.88301 -16.68896
-15.78933 -15.74948 -15.31939 -15.12639 -14.79136 -14.71584 -14.60989 -14.20405
-13.96555 -13.73013 -13.56776 -13.52195 -13.07460 -12.93060 -12.80851 -12.25643
-12.17704 -12.04077 -12.01705 -11.84756 -11.66926 -11.42758 -11.28086 -11.05424
-10.83380 -10.46178 -9.94073 -9.90435 -8.99830 -7.91349 -5.20459 0.53174
1.13334 1.46411 1.48196 1.56201 1.90629 2.28759 2.41727 2.56489
3.40130 3.43764 3.69300 3.80960 3.83206 4.07185 4.16311 4.26974
4.31990 4.41817 4.45539 4.55150 4.60641 4.61810 4.70645 4.81376
4.96879 5.01217 5.03982 5.11692 5.16415 5.25873 5.30488 5.31780
5.36648 5.47252 5.52647 5.55962 5.68063 6.14161 6.28147 6.50988
6.88880 7.19680 7.34496 8.08527 8.33016 9.32085
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.010722 B = 0.005614 C = 0.003933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2610.918595 B = 4986.641470 C = 7117.794833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.033 3.967
3 C -0.208 4.208
4 C -0.037 4.037
5 C 0.597 3.403
6 O -0.575 6.575
7 N -0.691 5.691
8 C 0.146 3.854
9 H 0.057 0.943
10 C -0.115 4.115
11 C -0.109 4.109
12 C -0.110 4.110
13 C -0.127 4.127
14 C 0.172 3.828
15 H 0.055 0.945
16 N -0.732 5.732
17 C -0.231 4.231
18 H 0.079 0.921
19 C -0.076 4.076
20 N -0.972 5.972
21 Si 0.970 3.030
22 H -0.289 1.289
23 H -0.301 1.301
24 H -0.267 1.267
25 N -0.275 5.275
26 N -0.367 5.367
27 H 0.460 0.540
28 H 0.099 0.901
29 H 0.093 0.907
30 H 0.094 0.906
31 H 0.164 0.836
32 H 0.408 0.592
33 H 0.058 0.942
34 H 0.076 0.924
35 H 0.056 0.944
36 H 0.089 0.911
37 H 0.076 0.924
38 H 0.071 0.929
39 H 0.042 0.958
40 H 0.051 0.949
41 H 0.368 0.632
42 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.270 -0.162 -15.150 18.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.094 4.094
3 C -0.236 4.236
4 C -0.196 4.196
5 C 0.382 3.618
6 O -0.454 6.454
7 N -0.339 5.339
8 C 0.040 3.960
9 H 0.075 0.925
10 C -0.154 4.154
11 C -0.147 4.147
12 C -0.148 4.148
13 C -0.168 4.168
14 C 0.064 3.936
15 H 0.073 0.927
16 N -0.371 5.371
17 C -0.363 4.363
18 H 0.097 0.903
19 C -0.268 4.268
20 N -0.623 5.623
21 Si 0.800 3.200
22 H -0.217 1.217
23 H -0.228 1.228
24 H -0.191 1.191
25 N -0.112 5.112
26 N -0.084 5.084
27 H 0.308 0.692
28 H 0.117 0.883
29 H 0.111 0.889
30 H 0.113 0.887
31 H 0.182 0.818
32 H 0.243 0.757
33 H 0.077 0.923
34 H 0.095 0.905
35 H 0.074 0.926
36 H 0.108 0.892
37 H 0.094 0.906
38 H 0.090 0.910
39 H 0.061 0.939
40 H 0.070 0.930
41 H 0.199 0.801
42 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -9.512 -0.417 -15.143 17.887
hybrid contribution -0.350 -0.631 1.383 1.560
sum -9.862 -1.049 -13.760 16.961
Atomic orbital electron populations
1.20544 0.82828 1.05519 1.04978 1.22030 0.97186 0.85805 1.04349
1.21737 0.90048 1.00973 1.10869 1.21904 0.95452 0.90443 1.11831
1.17230 0.82639 0.86283 0.75627 1.90709 1.87475 1.14147 1.53041
1.45790 1.04831 1.10945 1.72367 1.21286 0.83109 0.93951 0.97609
0.92478 1.21818 0.98429 1.00904 0.94254 1.21477 0.93334 0.97885
1.02004 1.21520 0.98399 1.00411 0.94425 1.22080 0.97924 0.99288
0.97464 1.20679 0.92117 0.95501 0.85341 0.92654 1.42590 1.53556
1.29874 1.11108 1.19602 1.19224 1.01759 0.95690 0.90264 1.25521
1.01084 1.02224 0.97955 1.69859 1.39728 1.41935 1.10738 0.85179
0.77008 0.79708 0.78103 1.21674 1.22758 1.19136 1.73529 1.03360
1.14641 1.19628 1.43425 1.02095 1.10718 1.52188 0.69178 0.88293
0.88868 0.88707 0.81838 0.75675 0.92316 0.90529 0.92562 0.89238
0.90566 0.91045 0.93865 0.93027 0.80128 0.94387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.77 10.44 71.24 0.74 -0.02 16
2 C 0.03 0.67 7.23 41.40 0.30 0.97 16
3 C -0.21 -5.97 10.73 22.41 0.24 -5.73 16
4 C -0.04 -1.29 7.13 42.46 0.30 -0.99 16
5 C 0.60 24.04 7.79 86.75 0.68 24.72 16
6 O -0.57 -25.71 16.59 -3.97 -0.07 -25.77 16
7 N -0.69 -26.57 4.90 -445.53 -2.19 -28.75 16
8 C 0.15 5.41 1.98 44.99 0.09 5.50 16
9 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16
10 C -0.12 -3.36 5.49 30.59 0.17 -3.19 16
11 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16
12 C -0.11 -2.82 5.92 30.59 0.18 -2.64 16
13 C -0.13 -4.49 5.50 30.59 0.17 -4.32 16
14 C 0.17 6.86 2.29 44.99 0.10 6.96 16
15 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16
16 N -0.73 -37.48 4.95 -322.92 -1.60 -39.08 16
17 C -0.23 -12.77 9.93 84.03 0.83 -11.93 16
18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16
19 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16
20 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16
21 Si 0.97 46.68 29.55 68.60 2.03 48.71 16
22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
23 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16
24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
25 N -0.27 -8.70 11.92 -48.18 -0.57 -9.27 16
26 N -0.37 -8.05 6.83 -47.93 -0.33 -8.37 16
27 H 0.46 6.14 8.96 -220.00 -1.97 4.16 16
28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16
29 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16
30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
31 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16
32 H 0.41 15.69 8.33 -92.71 -0.77 14.91 16
33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
35 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16
36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16
38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16
40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
41 H 0.37 21.19 7.80 -92.71 -0.72 20.47 16
42 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16
Total: -1.00 -75.72 349.49 -0.40 -76.12
By element:
Atomic # 1 Polarization: 46.92 SS G_CDS: -2.41 Total: 44.50 kcal
Atomic # 6 Polarization: -1.58 SS G_CDS: 4.45 Total: 2.87 kcal
Atomic # 7 Polarization: -142.02 SS G_CDS: -4.40 Total: -146.43 kcal
Atomic # 8 Polarization: -25.71 SS G_CDS: -0.07 Total: -25.77 kcal
Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal
Total: -75.72 -0.40 -76.12 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085142403.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.473 kcal
(2) G-P(sol) polarization free energy of solvation -75.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.752 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.123 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds