Wall clock time and date at job start Tue Mar 31 2020 03:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39676 * 126.06808 * 2 1 4 4 C 1.38408 * 105.35975 * 179.97438 * 3 2 1 5 5 C 1.47163 * 126.88252 * 179.97438 * 4 3 2 6 6 O 1.21629 * 119.99911 * 174.93201 * 5 4 3 7 7 N 1.34772 * 119.99918 * 354.93525 * 5 4 3 8 8 C 1.46500 * 120.00466 * 5.16821 * 7 5 4 9 9 C 1.46498 * 120.00060 * 185.16433 * 7 5 4 10 10 C 1.53008 * 109.47324 * 275.89153 * 9 7 5 11 11 H 1.08996 * 112.96274 * 51.23027 * 10 9 7 12 12 C 1.53947 * 113.76898 * 182.90972 * 10 9 7 13 13 C 1.53948 * 86.28646 * 137.90623 * 12 10 9 14 14 N 1.47581 * 113.76466 * 279.55043 * 10 9 7 15 15 C 1.36942 * 134.49172 * 41.07554 * 14 10 9 16 16 H 1.07997 * 120.00115 * 6.16782 * 15 14 10 17 17 C 1.38812 * 119.99944 * 186.17167 * 15 14 10 18 18 N 1.31617 * 119.99679 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46951 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47344 * 119.99628 * 19 17 15 22 22 H 1.48500 * 109.47507 * 240.00074 * 19 17 15 23 23 N 1.36597 * 106.23106 * 0.25385 * 4 3 2 24 24 C 1.46496 * 125.18959 * 179.73536 * 23 4 3 25 25 N 1.28446 * 109.61888 * 359.56255 * 23 4 3 26 26 H 1.09007 * 109.46814 * 90.00867 * 1 2 3 27 27 H 1.09009 * 109.46971 * 210.00392 * 1 2 3 28 28 H 1.08995 * 109.47556 * 330.00818 * 1 2 3 29 29 H 1.08000 * 127.31557 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.47078 * 56.68753 * 8 7 5 31 31 H 1.09004 * 109.46736 * 296.68923 * 8 7 5 32 32 H 1.08997 * 109.47388 * 176.69347 * 8 7 5 33 33 H 1.08999 * 109.47034 * 35.88722 * 9 7 5 34 34 H 1.09002 * 109.47275 * 155.88789 * 9 7 5 35 35 H 1.08994 * 113.74293 * 252.25254 * 12 10 9 36 36 H 1.09002 * 113.73867 * 23.45409 * 12 10 9 37 37 H 1.08992 * 113.77133 * 90.69502 * 13 12 10 38 38 H 1.09001 * 113.76649 * 221.97905 * 13 12 10 39 39 H 0.97006 * 120.00019 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.46908 * 94.49194 * 24 23 4 41 41 H 1.08996 * 109.47422 * 214.48599 * 24 23 4 42 42 H 1.09001 * 109.47180 * 334.49221 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6396 0.0006 5 6 4.8664 1.4283 0.0003 6 8 5.9421 0.8685 0.0940 7 7 4.8122 2.7710 -0.1037 8 6 3.5162 3.4541 -0.1023 9 6 6.0492 3.5473 -0.2179 10 6 6.6200 3.8058 1.1780 11 1 6.7109 2.8984 1.7749 12 6 7.8885 4.6781 1.1779 13 6 7.2756 5.3934 2.3956 14 7 5.9691 4.9231 1.8892 15 6 4.6752 5.3510 2.0242 16 1 3.8662 4.7602 1.6207 17 6 4.4036 6.5441 2.6797 18 7 5.3895 7.2638 3.1718 19 14 2.6388 7.1281 2.8633 20 1 1.7237 6.1458 2.2285 21 1 2.3063 7.2535 4.3051 22 1 2.4832 8.4490 2.2026 23 7 3.5173 -0.7222 -0.0049 24 6 4.6450 -1.6573 -0.0119 25 7 2.2775 -1.0577 0.0007 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 2.0205 2.1639 -0.0004 30 1 2.9693 3.1940 0.8040 31 1 2.9414 3.1444 -0.9752 32 1 3.6737 4.5322 -0.1349 33 1 6.7750 2.9894 -0.8096 34 1 5.8373 4.4988 -0.7057 35 1 8.8004 4.1266 1.4061 36 1 7.9847 5.3125 0.2968 37 1 7.5584 4.9534 3.3518 38 1 7.3942 6.4767 2.3743 39 1 5.1997 8.0973 3.6302 40 1 4.8760 -1.9555 1.0108 41 1 4.3825 -2.5388 -0.5968 42 1 5.5156 -1.1734 -0.4547 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085504312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:15 Heat of formation + Delta-G solvation = 101.916977 kcal Electronic energy + Delta-G solvation = -24268.581985 eV Core-core repulsion = 20866.712316 eV Total energy + Delta-G solvation = -3401.869669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.60388 -40.87199 -39.35387 -36.76543 -34.86988 -34.24284 -32.45640 -30.55713 -30.09180 -29.32034 -28.04422 -26.26765 -25.22018 -24.80820 -23.11336 -21.87128 -20.83534 -19.95246 -18.76894 -18.01830 -17.71019 -17.41083 -16.84109 -16.77558 -16.33433 -15.72962 -15.29220 -15.12184 -14.84906 -14.65440 -14.35518 -14.13806 -13.97602 -13.47976 -13.30797 -13.26908 -13.14327 -13.05819 -12.92056 -12.71528 -12.63779 -12.47260 -12.16614 -11.76858 -11.51245 -11.44407 -11.20408 -11.04631 -10.75413 -10.19419 -9.87942 -9.61870 -8.80529 -7.78739 -5.12862 0.18692 1.34345 1.49675 1.51460 1.53774 1.60299 2.05380 2.14334 2.53177 3.30351 3.37865 3.47322 3.50704 3.99204 4.03666 4.21608 4.26337 4.29780 4.31441 4.36666 4.41018 4.56447 4.58672 4.61373 4.64616 4.71867 4.89115 4.90977 4.94230 5.00715 5.03887 5.07979 5.13301 5.38028 5.46254 5.56719 5.66483 5.75358 5.76497 6.02682 6.27829 6.92051 7.00511 7.06847 7.72919 8.69388 9.38244 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.005475 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.623886 B = 5112.775433 C = 6567.447008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.012 3.988 3 C -0.201 4.201 4 C -0.052 4.052 5 C 0.582 3.418 6 O -0.572 6.572 7 N -0.583 5.583 8 C 0.064 3.936 9 C 0.131 3.869 10 C 0.130 3.870 11 H 0.028 0.972 12 C -0.130 4.130 13 C 0.142 3.858 14 N -0.623 5.623 15 C -0.221 4.221 16 H 0.108 0.892 17 C -0.074 4.074 18 N -0.958 5.958 19 Si 0.962 3.038 20 H -0.248 1.248 21 H -0.307 1.307 22 H -0.295 1.295 23 N -0.269 5.269 24 C 0.083 3.917 25 N -0.298 5.298 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.196 0.804 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.005 0.995 38 H 0.051 0.949 39 H 0.242 0.758 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 -12.987 -10.528 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.145 4.145 3 C -0.229 4.229 4 C -0.180 4.180 5 C 0.370 3.630 6 O -0.453 6.453 7 N -0.313 5.313 8 C -0.078 4.078 9 C 0.008 3.992 10 C 0.023 3.977 11 H 0.046 0.954 12 C -0.168 4.168 13 C 0.016 3.984 14 N -0.350 5.350 15 C -0.349 4.349 16 H 0.125 0.875 17 C -0.266 4.266 18 N -0.608 5.608 19 Si 0.791 3.209 20 H -0.171 1.171 21 H -0.235 1.235 22 H -0.223 1.223 23 N -0.056 5.056 24 C -0.056 4.056 25 N -0.132 5.132 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.213 0.787 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.023 0.977 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.311 -14.340 -10.414 18.501 hybrid contribution -0.428 1.407 1.040 1.802 sum -5.740 -12.932 -9.373 16.972 Atomic orbital electron populations 1.20224 0.83853 1.04162 1.03987 1.22711 0.98758 0.88398 1.04588 1.23382 0.89801 1.02416 1.07304 1.21425 0.96022 0.85772 1.14758 1.17117 0.86693 0.82330 0.76847 1.90711 1.30897 1.71043 1.52656 1.47465 1.09068 1.04598 1.70151 1.22704 0.83748 0.99236 1.02080 1.21870 0.85067 0.95521 0.96790 1.22648 0.91593 0.90850 0.92607 0.95427 1.23539 0.96009 0.98069 0.99227 1.22268 0.84443 0.98418 0.93228 1.46541 1.02542 1.28951 1.56919 1.19925 0.83594 1.01765 1.29587 0.87484 1.25617 1.00747 0.98209 1.02074 1.70039 1.31315 1.15426 1.44004 0.85228 0.80664 0.78411 0.76558 1.17085 1.23483 1.22252 1.45764 1.05536 1.04402 1.49944 1.22462 0.85193 0.92744 1.05223 1.73067 0.89753 1.28810 1.21594 0.89271 0.90757 0.88915 0.78724 0.91467 0.88903 0.89295 0.89225 0.88806 0.90337 0.89029 0.97728 0.93074 0.94881 0.89459 0.86895 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.45 71.23 0.74 -0.29 16 2 C 0.01 0.29 7.22 43.05 0.31 0.60 16 3 C -0.20 -5.25 8.85 22.66 0.20 -5.05 16 4 C -0.05 -1.58 6.89 40.79 0.28 -1.30 16 5 C 0.58 19.66 7.59 86.59 0.66 20.31 16 6 O -0.57 -21.32 14.40 -4.12 -0.06 -21.38 16 7 N -0.58 -18.79 2.89 -850.96 -2.46 -21.24 16 8 C 0.06 1.77 6.68 127.77 0.85 2.63 16 9 C 0.13 4.33 5.16 86.38 0.45 4.78 16 10 C 0.13 5.19 4.49 45.10 0.20 5.40 16 11 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 12 C -0.13 -4.74 7.86 31.25 0.25 -4.49 16 13 C 0.14 6.77 7.68 86.44 0.66 7.44 16 14 N -0.62 -30.40 3.58 -690.87 -2.47 -32.87 16 15 C -0.22 -11.30 9.77 84.03 0.82 -10.48 16 16 H 0.11 4.92 4.08 -2.91 -0.01 4.90 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 18 N -0.96 -56.93 11.30 21.65 0.24 -56.68 16 19 Si 0.96 43.21 29.55 68.60 2.03 45.23 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 21 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 22 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 23 N -0.27 -7.74 3.75 -356.03 -1.33 -9.07 16 24 C 0.08 1.86 10.90 127.77 1.39 3.26 16 25 N -0.30 -8.42 11.90 -47.49 -0.57 -8.98 16 26 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.20 4.24 4.29 -2.91 -0.01 4.23 16 30 H 0.07 1.93 5.95 -2.38 -0.01 1.91 16 31 H 0.09 1.95 6.58 -2.39 -0.02 1.94 16 32 H 0.09 2.70 6.20 -2.39 -0.01 2.69 16 33 H 0.09 2.73 7.68 -2.39 -0.02 2.71 16 34 H 0.09 3.03 7.83 -2.39 -0.02 3.01 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.09 3.06 8.10 -2.39 -0.02 3.04 16 37 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.05 2.72 6.92 -2.39 -0.02 2.70 16 39 H 0.24 14.16 8.31 -92.70 -0.77 13.39 16 40 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.10 2.51 6.18 -2.39 -0.01 2.50 16 Total: -1.00 -70.82 334.99 3.71 -67.11 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.04 Total: 18.68 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.29 Total: 19.21 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -6.59 Total: -128.85 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.06 Total: -21.38 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.82 3.71 -67.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085504312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.025 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds