Wall clock time and date at job start Tue Mar 31 2020 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33317 * 126.10981 * 2 1 4 4 C 1.30861 * 109.68842 * 180.27859 * 3 2 1 5 5 N 1.34493 * 109.15813 * 359.76866 * 4 3 2 6 6 C 1.46506 * 126.47045 * 179.97438 * 5 4 3 7 7 C 1.36669 * 126.10612 * 179.88940 * 2 1 3 8 8 C 1.46761 * 126.84377 * 359.97438 * 7 2 1 9 9 O 1.21677 * 120.00306 * 277.88030 * 8 7 2 10 10 N 1.34779 * 120.00007 * 97.87910 * 8 7 2 11 11 C 1.46503 * 119.99614 * 4.70247 * 10 8 7 12 12 C 1.46500 * 120.00295 * 184.69688 * 10 8 7 13 13 C 1.52996 * 109.47283 * 275.99851 * 12 10 8 14 14 H 1.09001 * 112.96570 * 47.30825 * 13 12 10 15 15 C 1.53942 * 113.76840 * 178.98021 * 13 12 10 16 16 C 1.53948 * 86.28943 * 137.90977 * 15 13 12 17 17 N 1.47574 * 113.77027 * 275.62600 * 13 12 10 18 18 C 1.36945 * 134.49539 * 41.07041 * 17 13 12 19 19 H 1.07994 * 119.99484 * 337.66009 * 18 17 13 20 20 C 1.38808 * 119.99995 * 157.65895 * 18 17 13 21 21 N 1.31626 * 119.99802 * 170.50775 * 20 18 17 22 22 Si 1.86793 * 120.00406 * 350.50261 * 20 18 17 23 23 H 1.48506 * 109.46905 * 85.81948 * 22 20 18 24 24 H 1.48504 * 109.47421 * 205.81864 * 22 20 18 25 25 H 1.48499 * 109.47361 * 325.82067 * 22 20 18 26 26 H 1.09004 * 109.46720 * 270.11795 * 1 2 3 27 27 H 1.09001 * 109.47300 * 30.11295 * 1 2 3 28 28 H 1.08997 * 109.47242 * 150.11683 * 1 2 3 29 29 H 1.07996 * 125.42167 * 179.78718 * 4 3 2 30 30 H 1.09002 * 109.46867 * 274.92339 * 6 5 4 31 31 H 1.09002 * 109.47327 * 34.91567 * 6 5 4 32 32 H 1.08996 * 109.47095 * 154.92490 * 6 5 4 33 33 H 1.09003 * 109.46765 * 206.36724 * 11 10 8 34 34 H 1.09000 * 109.47294 * 86.37343 * 11 10 8 35 35 H 1.08997 * 109.47175 * 326.37387 * 11 10 8 36 36 H 1.08996 * 109.46584 * 35.99772 * 12 10 8 37 37 H 1.08999 * 109.46830 * 155.99649 * 12 10 8 38 38 H 1.09000 * 113.74441 * 252.25570 * 15 13 12 39 39 H 1.08997 * 113.74349 * 23.46015 * 15 13 12 40 40 H 1.08998 * 113.77252 * 90.69431 * 16 15 13 41 41 H 1.08997 * 113.77189 * 221.98500 * 16 15 13 42 42 H 0.96993 * 119.99983 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7071 -0.0060 5 7 3.6121 -0.6363 -0.0050 6 6 4.8305 -1.4499 -0.0108 7 6 2.3123 -1.1042 0.0021 8 6 1.8820 -2.5073 0.0054 9 8 1.5659 -3.0443 1.0504 10 7 1.8370 -3.2010 -1.1493 11 6 2.3147 -2.5880 -2.3912 12 6 1.3104 -4.5680 -1.1625 13 6 2.4182 -5.5452 -0.7640 14 1 2.9651 -5.2288 0.1242 15 6 1.9631 -7.0152 -0.7215 16 6 3.3030 -7.3453 -1.4040 17 7 3.2880 -5.9481 -1.8860 18 6 3.8526 -5.2910 -2.9466 19 1 3.4236 -4.3643 -3.2980 20 6 4.9762 -5.8162 -3.5699 21 7 5.4083 -5.2925 -4.6976 22 14 5.8751 -7.2658 -2.8084 23 1 5.2356 -8.5316 -3.2491 24 1 7.2951 -7.2513 -3.2427 25 1 5.8091 -7.1670 -1.3282 26 1 -0.3633 0.0021 1.0277 27 1 -0.3634 0.8890 -0.5156 28 1 -0.3633 -0.8910 -0.5120 29 1 4.3970 1.3743 -0.0107 30 1 5.1759 -1.5793 -1.0365 31 1 5.6038 -0.9503 0.5726 32 1 4.6181 -2.4252 0.4268 33 1 1.8055 -3.0435 -3.2405 34 1 3.3892 -2.7460 -2.4845 35 1 2.1051 -1.5185 -2.3725 36 1 0.4850 -4.6462 -0.4549 37 1 0.9548 -4.8107 -2.1639 38 1 1.8736 -7.4180 0.2874 39 1 1.0905 -7.2226 -1.3408 40 1 4.1116 -7.5583 -0.7048 41 1 3.2206 -8.0878 -2.1977 42 1 6.1937 -5.6592 -5.1329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085655493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:37 Heat of formation + Delta-G solvation = 95.673074 kcal Electronic energy + Delta-G solvation = -24640.845040 eV Core-core repulsion = 21238.704615 eV Total energy + Delta-G solvation = -3402.140425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16575 -39.45594 -38.01585 -35.08647 -34.39642 -32.39692 -31.34753 -29.28116 -28.49643 -27.83064 -26.31555 -25.87099 -23.63180 -23.11759 -21.73444 -20.49875 -19.41763 -18.79253 -17.32348 -16.92456 -16.47891 -15.75458 -15.50018 -15.36886 -15.19925 -14.53012 -13.83510 -13.70152 -13.55280 -13.46664 -13.02179 -12.93815 -12.68911 -12.52023 -12.25941 -12.14838 -12.13376 -12.06460 -11.91060 -11.44087 -11.25632 -10.76211 -10.49650 -10.26262 -10.11060 -9.92532 -9.69360 -9.53291 -9.42644 -8.87152 -8.31990 -8.30069 -7.10856 -5.99852 -3.36810 1.78348 2.34339 2.99206 3.02743 3.28458 3.37669 3.38746 3.38953 4.47071 4.49962 4.60894 4.63461 4.74267 5.07403 5.16584 5.23259 5.27683 5.29114 5.47663 5.51436 5.65559 5.72773 5.74357 5.83765 5.88973 5.91891 5.95090 6.00373 6.15910 6.22827 6.27870 6.31226 6.36339 6.43942 6.61233 6.75329 7.02800 7.10786 7.25775 7.58958 8.00489 8.27271 8.29356 8.60730 9.57473 10.29028 11.16400 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.005439 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.978010 B = 5146.500311 C = 5838.173435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.048 3.952 3 N -0.494 5.494 4 C 0.194 3.806 5 N -0.434 5.434 6 C 0.067 3.933 7 C -0.062 4.062 8 C 0.591 3.409 9 O -0.533 6.533 10 N -0.586 5.586 11 C 0.082 3.918 12 C 0.121 3.879 13 C 0.129 3.871 14 H 0.051 0.949 15 C -0.143 4.143 16 C 0.095 3.905 17 N -0.618 5.618 18 C -0.233 4.233 19 H 0.106 0.894 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.271 1.271 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.209 0.791 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 6.992 7.635 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 N -0.213 5.213 4 C -0.088 4.088 5 N -0.117 5.117 6 C -0.075 4.075 7 C -0.180 4.180 8 C 0.376 3.624 9 O -0.409 6.409 10 N -0.317 5.317 11 C -0.061 4.061 12 C -0.002 4.002 13 C 0.022 3.978 14 H 0.069 0.931 15 C -0.182 4.182 16 C -0.030 4.030 17 N -0.346 5.346 18 C -0.360 4.360 19 H 0.123 0.877 20 C -0.180 4.180 21 N -0.566 5.566 22 Si 0.714 3.286 23 H -0.213 1.213 24 H -0.229 1.229 25 H -0.196 1.196 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.226 0.774 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.505 7.492 7.844 12.164 hybrid contribution 1.480 -1.636 0.198 2.215 sum -4.025 5.856 8.042 10.731 Atomic orbital electron populations 1.20070 0.87307 1.02669 1.02584 1.20749 0.96268 0.86819 1.04648 1.69970 1.00382 1.30130 1.20846 1.24900 0.97096 0.81755 1.05024 1.45328 1.06086 1.07716 1.52560 1.22222 0.84196 0.96230 1.04823 1.20762 0.84766 0.95174 1.17251 1.16935 0.78451 0.83253 0.83776 1.90808 1.49545 1.69453 1.31094 1.47754 1.61104 1.14727 1.08109 1.21995 1.01538 0.96995 0.85540 1.21919 0.96366 0.79326 1.02626 1.22602 0.91434 0.92639 0.91166 0.93137 1.23557 0.98455 0.96438 0.99705 1.22835 0.94565 0.89345 0.96245 1.46626 1.59758 1.03690 1.24516 1.18978 1.06465 1.07832 1.02712 0.87666 1.25055 0.96791 0.98591 0.97530 1.69712 1.26420 1.42972 1.17518 0.86825 0.78904 0.83149 0.79696 1.21278 1.22896 1.19595 0.90992 0.90755 0.91463 0.77448 0.89126 0.89113 0.89371 0.90272 0.90718 0.92370 0.90440 0.89388 0.92212 0.90007 0.93914 0.92680 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.24 36.00 0.37 -0.50 16 2 C 0.05 0.74 7.15 -82.52 -0.59 0.15 16 3 N -0.49 -7.43 11.20 -10.65 -0.12 -7.55 16 4 C 0.19 2.43 12.52 -90.57 -1.13 1.30 16 5 N -0.43 -5.97 3.17 -121.97 -0.39 -6.35 16 6 C 0.07 0.79 11.07 59.85 0.66 1.45 16 7 C -0.06 -1.00 4.79 -82.14 -0.39 -1.39 16 8 C 0.59 10.33 6.54 -12.82 -0.08 10.25 16 9 O -0.53 -10.68 16.84 5.21 0.09 -10.59 16 10 N -0.59 -9.85 2.89 -183.10 -0.53 -10.38 16 11 C 0.08 1.33 8.66 59.85 0.52 1.85 16 12 C 0.12 2.03 5.22 -4.04 -0.02 2.00 16 13 C 0.13 2.43 4.49 -66.87 -0.30 2.13 16 14 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.14 -2.37 7.86 -25.79 -0.20 -2.58 16 16 C 0.10 1.93 5.82 -2.85 -0.02 1.92 16 17 N -0.62 -13.85 3.29 -169.74 -0.56 -14.41 16 18 C -0.23 -5.98 10.62 -15.06 -0.16 -6.14 16 19 H 0.11 2.70 4.56 -52.49 -0.24 2.46 16 20 C 0.02 0.50 5.50 -17.43 -0.10 0.41 16 21 N -0.92 -26.88 13.97 55.49 0.78 -26.11 16 22 Si 0.88 21.85 25.25 -169.99 -4.29 17.56 16 23 H -0.29 -7.00 7.05 56.52 0.40 -6.60 16 24 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.27 -6.54 5.81 56.52 0.33 -6.21 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.83 7.94 -51.93 -0.41 0.41 16 29 H 0.21 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.21 7.79 -51.93 -0.40 0.81 16 33 H 0.08 1.27 7.47 -51.93 -0.39 0.89 16 34 H 0.07 1.38 6.75 -51.93 -0.35 1.03 16 35 H 0.06 0.87 6.94 -51.93 -0.36 0.51 16 36 H 0.08 1.22 7.68 -51.93 -0.40 0.82 16 37 H 0.09 1.46 7.79 -51.93 -0.40 1.06 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.04 0.90 6.39 -51.93 -0.33 0.56 16 41 H 0.06 1.14 7.39 -51.93 -0.38 0.76 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -32.89 341.06 -7.60 -40.49 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.26 Total: 1.35 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -1.45 Total: 10.85 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.82 Total: -64.79 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.29 Total: 17.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.89 -7.60 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085655493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.162 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds