Wall clock time and date at job start Tue Mar 31 2020 04:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33317 * 126.10981 * 2 1 4 4 C 1.30861 * 109.68842 * 180.27859 * 3 2 1 5 5 N 1.34493 * 109.15813 * 359.76866 * 4 3 2 6 6 C 1.46506 * 126.47045 * 179.97438 * 5 4 3 7 7 C 1.36669 * 126.10612 * 179.88940 * 2 1 3 8 8 C 1.46761 * 126.84377 * 359.97438 * 7 2 1 9 9 O 1.21677 * 120.00306 * 277.88030 * 8 7 2 10 10 N 1.34779 * 120.00007 * 97.87910 * 8 7 2 11 11 C 1.46503 * 119.99614 * 4.70247 * 10 8 7 12 12 C 1.46500 * 120.00295 * 184.69688 * 10 8 7 13 13 C 1.52996 * 109.47283 * 275.99851 * 12 10 8 14 14 H 1.09001 * 112.96570 * 47.30825 * 13 12 10 15 15 C 1.53942 * 113.76840 * 178.98021 * 13 12 10 16 16 C 1.53948 * 86.28943 * 137.90977 * 15 13 12 17 17 N 1.47574 * 113.77027 * 275.62600 * 13 12 10 18 18 C 1.36945 * 134.49539 * 41.07041 * 17 13 12 19 19 H 1.07994 * 119.99484 * 337.66009 * 18 17 13 20 20 C 1.38808 * 119.99995 * 157.65895 * 18 17 13 21 21 N 1.31626 * 119.99802 * 170.50775 * 20 18 17 22 22 Si 1.86793 * 120.00406 * 350.50261 * 20 18 17 23 23 H 1.48506 * 109.46905 * 85.81948 * 22 20 18 24 24 H 1.48504 * 109.47421 * 205.81864 * 22 20 18 25 25 H 1.48499 * 109.47361 * 325.82067 * 22 20 18 26 26 H 1.09004 * 109.46720 * 270.11795 * 1 2 3 27 27 H 1.09001 * 109.47300 * 30.11295 * 1 2 3 28 28 H 1.08997 * 109.47242 * 150.11683 * 1 2 3 29 29 H 1.07996 * 125.42167 * 179.78718 * 4 3 2 30 30 H 1.09002 * 109.46867 * 274.92339 * 6 5 4 31 31 H 1.09002 * 109.47327 * 34.91567 * 6 5 4 32 32 H 1.08996 * 109.47095 * 154.92490 * 6 5 4 33 33 H 1.09003 * 109.46765 * 206.36724 * 11 10 8 34 34 H 1.09000 * 109.47294 * 86.37343 * 11 10 8 35 35 H 1.08997 * 109.47175 * 326.37387 * 11 10 8 36 36 H 1.08996 * 109.46584 * 35.99772 * 12 10 8 37 37 H 1.08999 * 109.46830 * 155.99649 * 12 10 8 38 38 H 1.09000 * 113.74441 * 252.25570 * 15 13 12 39 39 H 1.08997 * 113.74349 * 23.46015 * 15 13 12 40 40 H 1.08998 * 113.77252 * 90.69431 * 16 15 13 41 41 H 1.08997 * 113.77189 * 221.98500 * 16 15 13 42 42 H 0.96993 * 119.99983 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7071 -0.0060 5 7 3.6121 -0.6363 -0.0050 6 6 4.8305 -1.4499 -0.0108 7 6 2.3123 -1.1042 0.0021 8 6 1.8820 -2.5073 0.0054 9 8 1.5659 -3.0443 1.0504 10 7 1.8370 -3.2010 -1.1493 11 6 2.3147 -2.5880 -2.3912 12 6 1.3104 -4.5680 -1.1625 13 6 2.4182 -5.5452 -0.7640 14 1 2.9651 -5.2288 0.1242 15 6 1.9631 -7.0152 -0.7215 16 6 3.3030 -7.3453 -1.4040 17 7 3.2880 -5.9481 -1.8860 18 6 3.8526 -5.2910 -2.9466 19 1 3.4236 -4.3643 -3.2980 20 6 4.9762 -5.8162 -3.5699 21 7 5.4083 -5.2925 -4.6976 22 14 5.8751 -7.2658 -2.8084 23 1 5.2356 -8.5316 -3.2491 24 1 7.2951 -7.2513 -3.2427 25 1 5.8091 -7.1670 -1.3282 26 1 -0.3633 0.0021 1.0277 27 1 -0.3634 0.8890 -0.5156 28 1 -0.3633 -0.8910 -0.5120 29 1 4.3970 1.3743 -0.0107 30 1 5.1759 -1.5793 -1.0365 31 1 5.6038 -0.9503 0.5726 32 1 4.6181 -2.4252 0.4268 33 1 1.8055 -3.0435 -3.2405 34 1 3.3892 -2.7460 -2.4845 35 1 2.1051 -1.5185 -2.3725 36 1 0.4850 -4.6462 -0.4549 37 1 0.9548 -4.8107 -2.1639 38 1 1.8736 -7.4180 0.2874 39 1 1.0905 -7.2226 -1.3408 40 1 4.1116 -7.5583 -0.7048 41 1 3.2206 -8.0878 -2.1977 42 1 6.1937 -5.6592 -5.1329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085655493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:36 Heat of formation + Delta-G solvation = 74.874481 kcal Electronic energy + Delta-G solvation = -24641.746934 eV Core-core repulsion = 21238.704615 eV Total energy + Delta-G solvation = -3403.042319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.25574 -40.87666 -39.56884 -36.50213 -35.44118 -34.39763 -32.46901 -30.81177 -29.99832 -29.10569 -27.61702 -26.98385 -25.17021 -24.78414 -22.97135 -21.59289 -21.04244 -20.07791 -18.87132 -18.41101 -17.79387 -17.25687 -16.98445 -16.58465 -16.50078 -15.86917 -15.56298 -15.04998 -14.89539 -14.75595 -14.50330 -14.05484 -14.01273 -13.95754 -13.60749 -13.56706 -13.44140 -13.24898 -13.10647 -12.99557 -12.87381 -12.49894 -12.08727 -11.82181 -11.63698 -11.53816 -11.30419 -10.93041 -10.85833 -10.61418 -9.75627 -9.41757 -8.99431 -8.08607 -5.40583 0.66309 1.13309 1.30072 1.36171 1.41276 1.77948 1.95523 2.13460 2.45040 2.96895 3.21741 3.36715 3.61844 3.77871 3.79659 4.06693 4.14554 4.21486 4.23609 4.27889 4.31435 4.48263 4.52097 4.56187 4.57342 4.67806 4.75555 4.79442 4.85016 4.87288 4.90131 4.96240 5.00553 5.16444 5.35267 5.44020 5.53697 5.60838 6.11582 6.20317 6.27249 6.61379 6.91893 6.94400 7.53043 8.36136 9.10868 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.005439 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.978010 B = 5146.500311 C = 5838.173435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.044 3.956 3 N -0.521 5.521 4 C 0.212 3.788 5 N -0.439 5.439 6 C 0.070 3.930 7 C -0.095 4.095 8 C 0.597 3.403 9 O -0.563 6.563 10 N -0.586 5.586 11 C 0.097 3.903 12 C 0.123 3.877 13 C 0.128 3.872 14 H 0.034 0.966 15 C -0.117 4.117 16 C 0.083 3.917 17 N -0.638 5.638 18 C -0.207 4.207 19 H 0.099 0.901 20 C -0.041 4.041 21 N -0.965 5.965 22 Si 0.931 3.069 23 H -0.282 1.282 24 H -0.313 1.313 25 H -0.264 1.264 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 7.349 8.897 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.240 5.240 4 C -0.070 4.070 5 N -0.121 5.121 6 C -0.072 4.072 7 C -0.212 4.212 8 C 0.383 3.617 9 O -0.441 6.441 10 N -0.316 5.316 11 C -0.046 4.046 12 C 0.000 4.000 13 C 0.022 3.978 14 H 0.052 0.948 15 C -0.155 4.155 16 C -0.041 4.041 17 N -0.366 5.366 18 C -0.335 4.335 19 H 0.117 0.883 20 C -0.234 4.234 21 N -0.614 5.614 22 Si 0.762 3.238 23 H -0.209 1.209 24 H -0.242 1.242 25 H -0.189 1.189 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.269 0.731 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.339 7.824 9.140 13.599 hybrid contribution 1.687 -1.661 -0.123 2.370 sum -4.652 6.163 9.017 11.871 Atomic orbital electron populations 1.20138 0.86057 1.03323 1.03086 1.21168 0.97363 0.86739 1.03636 1.70015 1.01431 1.30192 1.22354 1.25812 0.97693 0.81622 1.01890 1.45479 1.05776 1.08329 1.52503 1.22287 0.84412 0.95455 1.05008 1.20639 0.86119 0.94456 1.19983 1.17108 0.77569 0.83806 0.83240 1.90775 1.50957 1.70379 1.32009 1.47808 1.60816 1.14819 1.08200 1.21793 0.99683 0.97788 0.85310 1.21892 0.95949 0.78872 1.03244 1.22714 0.90993 0.94989 0.89110 0.94815 1.23425 0.96953 0.93807 1.01333 1.22986 0.96796 0.87985 0.96364 1.46897 1.59547 1.05212 1.24943 1.19148 1.05107 1.06822 1.02442 0.88326 1.25573 0.98311 1.01183 0.98359 1.69824 1.27294 1.45023 1.19228 0.86056 0.77331 0.81207 0.79252 1.20903 1.24204 1.18886 0.90510 0.89441 0.91429 0.73136 0.89611 0.85229 0.91925 0.90243 0.93333 0.91072 0.88813 0.88960 0.89279 0.87887 0.94284 0.93057 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.24 71.23 0.73 -0.92 16 2 C 0.04 1.29 7.15 41.96 0.30 1.59 16 3 N -0.52 -14.66 11.20 -187.60 -2.10 -16.76 16 4 C 0.21 4.77 12.52 180.33 2.26 7.03 16 5 N -0.44 -11.41 3.17 -539.80 -1.71 -13.13 16 6 C 0.07 1.57 11.07 127.77 1.41 2.98 16 7 C -0.10 -2.96 4.79 40.01 0.19 -2.77 16 8 C 0.60 20.55 6.54 86.47 0.57 21.12 16 9 O -0.56 -22.31 16.84 -4.27 -0.07 -22.38 16 10 N -0.59 -19.32 2.89 -851.42 -2.46 -21.78 16 11 C 0.10 3.12 8.66 127.77 1.11 4.23 16 12 C 0.12 3.94 5.22 86.38 0.45 4.39 16 13 C 0.13 4.63 4.49 45.09 0.20 4.84 16 14 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 15 C -0.12 -3.50 7.86 31.25 0.25 -3.26 16 16 C 0.08 3.22 5.82 86.44 0.50 3.72 16 17 N -0.64 -27.91 3.29 -690.93 -2.27 -30.19 16 18 C -0.21 -10.64 10.62 84.03 0.89 -9.75 16 19 H 0.10 5.12 4.56 -2.91 -0.01 5.11 16 20 C -0.04 -2.28 5.50 84.86 0.47 -1.81 16 21 N -0.96 -57.63 13.97 21.65 0.30 -57.33 16 22 Si 0.93 45.43 25.25 68.60 1.73 47.16 16 23 H -0.28 -13.43 7.05 99.48 0.70 -12.73 16 24 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 25 H -0.26 -12.36 5.81 99.48 0.58 -11.79 16 26 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 1.59 7.94 -2.39 -0.02 1.57 16 29 H 0.25 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.73 7.79 -2.39 -0.02 1.71 16 33 H 0.08 2.53 7.47 -2.39 -0.02 2.51 16 34 H 0.05 1.83 6.75 -2.39 -0.02 1.81 16 35 H 0.07 2.09 6.94 -2.39 -0.02 2.08 16 36 H 0.09 2.73 7.68 -2.39 -0.02 2.71 16 37 H 0.09 2.89 7.79 -2.39 -0.02 2.87 16 38 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 2.71 8.10 -2.39 -0.02 2.69 16 40 H 0.04 1.56 6.39 -2.39 -0.02 1.54 16 41 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 42 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -71.51 341.06 3.63 -67.89 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.89 Total: 15.12 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: 9.33 Total: 31.39 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -8.24 Total: -139.18 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.07 Total: -22.38 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.73 Total: 47.16 kcal Total: -71.51 3.63 -67.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085655493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.760 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds