Wall clock time and date at job start Tue Mar 31 2020 04:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33326 * 126.10628 * 2 1 4 4 C 1.30857 * 109.68259 * 180.02562 * 3 2 1 5 5 N 1.34493 * 109.16688 * 359.76541 * 4 3 2 6 6 C 1.46499 * 126.47637 * 180.25215 * 5 4 3 7 7 C 1.36665 * 126.10820 * 180.02562 * 2 1 3 8 8 C 1.46761 * 126.84396 * 359.96219 * 7 2 1 9 9 O 1.21678 * 120.00298 * 279.46959 * 8 7 2 10 10 N 1.34785 * 119.99912 * 99.46621 * 8 7 2 11 11 C 1.46500 * 119.99921 * 5.00651 * 10 8 7 12 12 C 1.46495 * 119.99777 * 185.00001 * 10 8 7 13 13 C 1.53000 * 109.46912 * 83.55777 * 12 10 8 14 14 H 1.09006 * 112.96449 * 311.57247 * 13 12 10 15 15 C 1.53944 * 113.77100 * 179.89516 * 13 12 10 16 16 C 1.53934 * 86.29223 * 222.08800 * 15 13 12 17 17 N 1.47585 * 86.24215 * 23.55079 * 16 15 13 18 18 C 1.36931 * 134.49124 * 155.42089 * 17 16 15 19 19 H 1.08007 * 119.99587 * 182.95069 * 18 17 16 20 20 C 1.38814 * 120.00355 * 2.95756 * 18 17 16 21 21 N 1.31617 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47148 * 89.99598 * 22 20 18 24 24 H 1.48508 * 109.46908 * 209.99824 * 22 20 18 25 25 H 1.48505 * 109.47108 * 329.99385 * 22 20 18 26 26 H 1.09000 * 109.46957 * 270.00140 * 1 2 3 27 27 H 1.09007 * 109.47074 * 29.99690 * 1 2 3 28 28 H 1.08994 * 109.47213 * 149.99855 * 1 2 3 29 29 H 1.08001 * 125.41670 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47649 * 275.14724 * 6 5 4 31 31 H 1.09007 * 109.47066 * 35.14696 * 6 5 4 32 32 H 1.09006 * 109.47202 * 155.14168 * 6 5 4 33 33 H 1.08995 * 109.47280 * 175.02233 * 11 10 8 34 34 H 1.09004 * 109.47127 * 295.02385 * 11 10 8 35 35 H 1.09008 * 109.47226 * 55.01720 * 11 10 8 36 36 H 1.08993 * 109.47316 * 323.55414 * 12 10 8 37 37 H 1.09007 * 109.46606 * 203.55022 * 12 10 8 38 38 H 1.09005 * 113.74433 * 107.73901 * 15 13 12 39 39 H 1.09004 * 113.83643 * 336.45263 * 15 13 12 40 40 H 1.09006 * 113.77193 * 137.90653 * 16 15 13 41 41 H 1.09000 * 113.77141 * 269.19381 * 16 15 13 42 42 H 0.96999 * 119.99483 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6122 -0.6362 0.0043 6 6 4.8305 -1.4497 0.0106 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0003 9 8 1.5385 -3.0382 1.0392 10 7 1.8675 -3.2078 -1.1518 11 6 2.3839 -2.6044 -2.3828 12 6 1.3353 -4.5725 -1.1721 13 6 -0.1871 -4.5241 -1.3166 14 1 -0.6583 -3.8288 -0.6218 15 6 -0.8516 -5.9123 -1.3514 16 6 -1.7347 -5.3508 -2.4803 17 7 -0.6503 -4.3771 -2.7125 18 6 -0.2394 -3.6368 -3.7887 19 1 0.6387 -3.0128 -3.7113 20 6 -0.9515 -3.6884 -4.9792 21 7 -2.0214 -4.4491 -5.0736 22 14 -0.3913 -2.6780 -6.4471 23 1 0.5543 -3.4776 -7.2665 24 1 -1.5696 -2.3071 -7.2714 25 1 0.2866 -1.4458 -5.9701 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 4.3970 1.3745 -0.0003 30 1 5.1869 -1.5784 -1.0114 31 1 5.5977 -0.9506 0.6027 32 1 4.6136 -2.4255 0.4454 33 1 2.3719 -3.3445 -3.1829 34 1 1.7579 -1.7569 -2.6624 35 1 3.4060 -2.2627 -2.2191 36 1 1.5962 -5.0781 -0.2424 37 1 1.7630 -5.1167 -2.0142 38 1 -1.4029 -6.1579 -0.4437 39 1 -0.1843 -6.7121 -1.6727 40 1 -1.8858 -6.0454 -3.3067 41 1 -2.6626 -4.8996 -2.1290 42 1 -2.5187 -4.4854 -5.9056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085655494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:40 Heat of formation + Delta-G solvation = 71.743329 kcal Electronic energy + Delta-G solvation = -24615.764785 eV Core-core repulsion = 21212.586689 eV Total energy + Delta-G solvation = -3403.178096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.24672 -40.82297 -39.36820 -36.50283 -35.43590 -34.24913 -32.45506 -30.43329 -29.80117 -29.09595 -27.56416 -26.94085 -25.23605 -24.73026 -22.81355 -21.60382 -20.90310 -20.07421 -18.77158 -18.43514 -17.76547 -16.90705 -16.86303 -16.60136 -16.49037 -15.82172 -15.57639 -15.12489 -14.71615 -14.67194 -14.51680 -14.03760 -13.96301 -13.66623 -13.53703 -13.28586 -13.21632 -13.14202 -13.09114 -12.90957 -12.72511 -12.51839 -12.24229 -11.83857 -11.50149 -11.46155 -11.22653 -10.93491 -10.79685 -10.59183 -9.75179 -9.43957 -8.84616 -7.83015 -5.14245 0.65971 1.13930 1.44653 1.47481 1.54125 1.67515 1.97245 2.21029 2.49545 3.33717 3.35257 3.45985 3.60669 3.81570 3.96765 4.08821 4.16478 4.24678 4.25621 4.32660 4.36992 4.46349 4.55839 4.63357 4.65364 4.68853 4.78281 4.83668 4.86394 4.90573 5.01026 5.06267 5.12979 5.34765 5.40075 5.49622 5.63561 5.71995 5.98976 6.16447 6.23917 6.91186 6.95021 6.98811 7.69895 8.66349 9.35274 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.005754 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.365982 B = 4865.182136 C = 5626.116815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.038 3.962 3 N -0.527 5.527 4 C 0.217 3.783 5 N -0.438 5.438 6 C 0.062 3.938 7 C -0.088 4.088 8 C 0.598 3.402 9 O -0.564 6.564 10 N -0.588 5.588 11 C 0.091 3.909 12 C 0.126 3.874 13 C 0.128 3.872 14 H 0.027 0.973 15 C -0.131 4.131 16 C 0.153 3.847 17 N -0.622 5.622 18 C -0.218 4.218 19 H 0.103 0.897 20 C -0.073 4.073 21 N -0.957 5.957 22 Si 0.961 3.039 23 H -0.283 1.283 24 H -0.304 1.304 25 H -0.267 1.267 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.260 0.740 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.006 0.994 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.710 4.711 9.306 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 N -0.247 5.247 4 C -0.066 4.066 5 N -0.121 5.121 6 C -0.079 4.079 7 C -0.205 4.205 8 C 0.384 3.616 9 O -0.442 6.442 10 N -0.318 5.318 11 C -0.052 4.052 12 C 0.003 3.997 13 C 0.021 3.979 14 H 0.044 0.956 15 C -0.170 4.170 16 C 0.027 3.973 17 N -0.348 5.348 18 C -0.346 4.346 19 H 0.121 0.879 20 C -0.265 4.265 21 N -0.608 5.608 22 Si 0.791 3.209 23 H -0.209 1.209 24 H -0.231 1.231 25 H -0.192 1.192 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.275 0.725 30 H 0.120 0.880 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 16.431 5.217 9.516 19.692 hybrid contribution -0.419 -0.165 -1.130 1.217 sum 16.012 5.052 8.386 18.768 Atomic orbital electron populations 1.20046 0.87707 1.02384 1.02592 1.20932 0.96663 0.87641 1.04174 1.69976 1.01963 1.30249 1.22484 1.25885 0.97330 0.81920 1.01421 1.45504 1.05565 1.08201 1.52837 1.22499 0.83658 0.95824 1.05874 1.20516 0.86483 0.93990 1.19486 1.17070 0.77627 0.83679 0.83220 1.90780 1.50394 1.70293 1.32754 1.47830 1.59822 1.15425 1.08709 1.21895 0.98292 0.99011 0.85988 1.21895 0.93140 0.81515 1.03190 1.22704 0.94107 0.95079 0.85971 0.95596 1.23568 0.98916 0.95961 0.98509 1.22070 0.90410 0.90396 0.94389 1.46578 1.33064 1.49524 1.05665 1.19784 1.07825 1.18659 0.88356 0.87918 1.25558 0.98049 1.02120 1.00814 1.70023 1.20594 1.44270 1.25869 0.85316 0.76660 0.78944 0.79995 1.20938 1.23147 1.19229 0.90486 0.90120 0.93257 0.72465 0.87963 0.85305 0.90832 0.89255 0.93926 0.90398 0.89080 0.88713 0.90248 0.88761 0.93901 0.97595 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 10.24 71.24 0.73 -1.55 16 2 C 0.04 1.26 7.15 41.96 0.30 1.56 16 3 N -0.53 -15.45 11.20 -187.59 -2.10 -17.55 16 4 C 0.22 4.31 12.52 180.33 2.26 6.56 16 5 N -0.44 -9.24 3.17 -539.81 -1.71 -10.95 16 6 C 0.06 0.70 10.60 127.77 1.35 2.05 16 7 C -0.09 -2.69 5.34 40.01 0.21 -2.48 16 8 C 0.60 20.50 6.54 86.47 0.57 21.07 16 9 O -0.56 -22.61 16.77 -4.28 -0.07 -22.68 16 10 N -0.59 -19.03 2.89 -851.41 -2.46 -21.49 16 11 C 0.09 2.63 8.02 127.77 1.02 3.66 16 12 C 0.13 4.18 5.28 86.38 0.46 4.63 16 13 C 0.13 5.16 4.49 45.05 0.20 5.37 16 14 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 15 C -0.13 -4.77 7.86 31.24 0.25 -4.52 16 16 C 0.15 7.32 7.43 86.48 0.64 7.97 16 17 N -0.62 -30.60 3.59 -690.95 -2.48 -33.07 16 18 C -0.22 -11.41 10.41 84.03 0.87 -10.54 16 19 H 0.10 4.89 3.92 -2.91 -0.01 4.88 16 20 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 21 N -0.96 -57.69 11.46 21.65 0.25 -57.44 16 22 Si 0.96 44.68 29.55 68.60 2.03 46.71 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.05 1.81 7.94 -2.39 -0.02 1.79 16 29 H 0.26 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.10 0.78 7.70 -2.39 -0.02 0.77 16 31 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 1.07 7.79 -2.38 -0.02 1.05 16 33 H 0.09 2.68 6.62 -2.39 -0.02 2.66 16 34 H 0.04 1.44 7.57 -2.38 -0.02 1.42 16 35 H 0.08 1.71 7.08 -2.38 -0.02 1.69 16 36 H 0.09 2.80 7.55 -2.39 -0.02 2.79 16 37 H 0.09 3.03 7.76 -2.38 -0.02 3.01 16 38 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.09 3.09 8.10 -2.39 -0.02 3.07 16 40 H 0.04 2.26 7.29 -2.38 -0.02 2.25 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -76.70 345.88 3.80 -72.90 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.02 Total: 13.40 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 9.33 Total: 30.18 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -8.50 Total: -140.50 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.07 Total: -22.68 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -76.70 3.80 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085655494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.639 kcal (2) G-P(sol) polarization free energy of solvation -76.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds