Wall clock time and date at job start Tue Mar 31 2020 04:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39677 * 127.31902 * 2 1 4 4 N 1.30854 * 107.86056 * 180.02562 * 3 2 1 5 5 N 1.28446 * 110.92948 * 359.71528 * 4 3 2 6 6 C 1.46499 * 125.19065 * 180.28063 * 5 4 3 7 7 C 1.36596 * 109.61852 * 0.46366 * 5 4 3 8 8 C 1.47163 * 126.88626 * 179.81188 * 7 5 4 9 9 O 1.21627 * 119.99797 * 99.12853 * 8 7 5 10 10 N 1.34771 * 120.00265 * 279.12907 * 8 7 5 11 11 C 1.46503 * 120.00470 * 174.85010 * 10 8 7 12 12 C 1.52993 * 109.47320 * 179.97438 * 11 10 8 13 13 H 1.09001 * 112.90513 * 43.75007 * 12 11 10 14 14 C 1.53782 * 113.61291 * 174.99807 * 12 11 10 15 15 C 1.53781 * 87.08176 * 139.98211 * 14 12 11 16 16 H 1.09001 * 113.61674 * 89.19777 * 15 14 12 17 17 N 1.46494 * 113.61589 * 220.01993 * 15 14 12 18 18 C 1.36938 * 119.99779 * 204.99936 * 17 15 14 19 19 H 1.08000 * 120.00491 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99595 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00512 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47462 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46894 * 300.00436 * 22 20 18 25 25 H 1.48496 * 109.46891 * 59.99866 * 22 20 18 26 26 C 1.53779 * 113.61513 * 272.49766 * 12 11 10 27 27 H 1.08998 * 109.47180 * 269.96775 * 1 2 3 28 28 H 1.08999 * 109.47050 * 29.97548 * 1 2 3 29 29 H 1.09007 * 109.47023 * 149.96955 * 1 2 3 30 30 H 1.08001 * 126.06623 * 0.06316 * 3 2 1 31 31 H 1.09001 * 109.47203 * 275.08145 * 6 5 4 32 32 H 1.08997 * 109.47533 * 35.08448 * 6 5 4 33 33 H 1.09007 * 109.46704 * 155.08359 * 6 5 4 34 34 H 0.97008 * 119.99928 * 354.84791 * 10 8 7 35 35 H 1.09001 * 109.46583 * 59.99552 * 11 10 8 36 36 H 1.08999 * 109.46702 * 300.00042 * 11 10 8 37 37 H 1.08995 * 113.61349 * 25.43638 * 14 12 11 38 38 H 1.09000 * 113.68834 * 254.54059 * 14 12 11 39 39 H 0.96998 * 119.99914 * 25.00341 * 17 15 14 40 40 H 0.97004 * 120.00571 * 180.02562 * 21 20 18 41 41 H 1.08994 * 113.61468 * 105.47369 * 26 12 11 42 42 H 1.08997 * 113.61713 * 334.56651 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5876 0.6749 -0.0006 5 7 3.6206 -0.6091 0.0050 6 6 4.8391 -1.4224 0.0120 7 6 2.3462 -1.1007 -0.0006 8 6 1.9456 -2.5167 -0.0010 9 8 1.6142 -3.0552 1.0380 10 7 1.9460 -3.2169 -1.1525 11 6 1.6569 -4.6531 -1.1368 12 6 1.7205 -5.2017 -2.5635 13 1 2.5766 -4.8269 -3.1245 14 6 1.5513 -6.7281 -2.6446 15 6 0.6926 -6.4875 -3.8974 16 1 1.2674 -6.4655 -4.8233 17 7 -0.4836 -7.3570 -3.9786 18 6 -1.0418 -7.6418 -5.1962 19 1 -0.6152 -7.2250 -6.0966 20 6 -2.1560 -8.4662 -5.2731 21 7 -2.6762 -8.9737 -4.1759 22 14 -2.9179 -8.8541 -6.9340 23 1 -4.0881 -9.7486 -6.7450 24 1 -3.3589 -7.5933 -7.5829 25 1 -1.9127 -9.5282 -7.7944 26 6 0.3891 -5.0926 -3.3254 27 1 -0.3633 -0.0006 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 2.0450 2.1457 0.0010 31 1 5.1948 -1.5527 -1.0100 32 1 5.6065 -0.9221 0.6028 33 1 4.6226 -2.3974 0.4486 34 1 2.1376 -2.7699 -1.9919 35 1 0.6600 -4.8185 -0.7283 36 1 2.3931 -5.1650 -0.5171 37 1 0.9946 -7.1507 -1.8083 38 1 2.4800 -7.2614 -2.8477 39 1 -0.8670 -7.7310 -3.1699 40 1 -3.4545 -9.5501 -4.2297 41 1 0.3803 -4.3044 -4.0783 42 1 -0.4853 -5.0681 -2.6752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086170698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:48 Heat of formation + Delta-G solvation = 69.449121 kcal Electronic energy + Delta-G solvation = -22705.670953 eV Core-core repulsion = 19302.393372 eV Total energy + Delta-G solvation = -3403.277581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.76375 -39.73128 -38.45564 -34.83850 -34.27171 -33.35962 -32.15382 -30.33693 -28.90368 -27.30977 -26.38351 -25.14887 -24.06412 -22.81013 -21.20910 -21.14913 -20.09546 -19.10407 -18.06718 -17.07436 -16.76660 -16.08125 -15.93990 -15.46114 -14.94124 -14.70897 -14.36824 -13.87828 -13.69985 -13.64483 -13.54049 -13.25028 -12.96053 -12.85840 -12.74665 -12.37101 -11.98682 -11.88265 -11.47050 -11.29148 -10.90180 -10.85456 -10.62308 -10.44972 -10.21874 -10.06856 -9.88246 -9.56093 -9.42210 -9.21926 -8.92355 -8.89593 -6.99759 -5.80815 -3.10016 1.38593 1.86745 2.40956 2.51161 3.01135 3.41372 3.45958 3.47074 4.14831 4.37252 4.55712 4.68715 4.76073 4.85617 4.87143 4.94102 4.96807 5.13014 5.15536 5.35977 5.41301 5.43630 5.51737 5.70256 5.73383 5.77821 5.85878 5.87499 6.04484 6.10687 6.23327 6.29176 6.30966 6.34737 6.45559 6.54392 6.76294 7.05849 7.21280 7.65884 7.78183 7.87713 8.37636 9.48684 10.06499 10.40604 11.41432 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027160 B = 0.002692 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.668134 B =10399.025163 C =10740.505905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.154 4.154 3 C 0.005 3.995 4 N -0.285 5.285 5 N -0.275 5.275 6 C 0.087 3.913 7 C -0.033 4.033 8 C 0.589 3.411 9 O -0.520 6.520 10 N -0.711 5.711 11 C 0.130 3.870 12 C -0.128 4.128 13 H 0.088 0.912 14 C -0.142 4.142 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.286 1.286 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.186 0.814 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.385 0.615 40 H 0.257 0.743 41 H 0.054 0.946 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.933 17.574 7.697 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.165 4.165 3 C -0.173 4.173 4 N -0.115 5.115 5 N -0.063 5.063 6 C -0.053 4.053 7 C -0.161 4.161 8 C 0.371 3.629 9 O -0.394 6.394 10 N -0.362 5.362 11 C 0.008 3.992 12 C -0.147 4.147 13 H 0.106 0.894 14 C -0.182 4.182 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.202 4.202 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.883 17.323 8.264 24.288 hybrid contribution -1.220 -0.319 -0.995 1.606 sum 13.663 17.005 7.269 22.993 Atomic orbital electron populations 1.20151 0.88208 1.02842 1.02554 1.20733 0.97001 0.90673 1.08100 1.23455 0.87694 0.99945 1.06198 1.73125 1.24511 0.93215 1.20665 1.45514 1.05437 1.03733 1.51633 1.22180 0.83880 0.94615 1.04650 1.21394 0.86042 0.94827 1.13859 1.17020 0.78285 0.83332 0.84232 1.90865 1.46907 1.69627 1.32037 1.46093 1.70645 1.10519 1.08965 1.21565 1.01865 0.78079 0.97739 1.22646 0.99878 0.98129 0.94039 0.89353 1.23455 1.00640 0.93014 1.01062 1.21511 0.89038 0.89438 0.94632 0.90662 1.42402 1.30211 1.55506 1.06908 1.19252 1.08372 1.24034 0.86082 0.91153 1.24771 0.98759 1.00240 0.97058 1.69645 1.25104 1.37127 1.26114 0.86267 0.78643 0.77834 0.83427 1.21655 1.21219 1.21226 1.23966 0.95228 1.01612 0.99443 0.91035 0.90904 0.91643 0.79704 0.89435 0.88335 0.88910 0.76204 0.90669 0.91461 0.90031 0.91944 0.78042 0.93350 0.92725 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.28 36.01 0.37 -0.37 16 2 C -0.15 -1.70 6.30 -104.02 -0.65 -2.35 16 3 C 0.00 0.05 12.00 -17.43 -0.21 -0.16 16 4 N -0.28 -3.20 11.90 30.59 0.36 -2.84 16 5 N -0.27 -2.89 3.75 -63.88 -0.24 -3.13 16 6 C 0.09 0.58 11.21 59.85 0.67 1.25 16 7 C -0.03 -0.39 6.71 -82.06 -0.55 -0.94 16 8 C 0.59 7.53 6.77 -12.64 -0.09 7.45 16 9 O -0.52 -8.61 17.12 5.25 0.09 -8.52 16 10 N -0.71 -7.66 5.55 -61.47 -0.34 -8.00 16 11 C 0.13 1.56 5.52 -4.04 -0.02 1.54 16 12 C -0.13 -1.57 3.75 -89.81 -0.34 -1.91 16 13 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.14 -2.13 7.39 -25.92 -0.19 -2.32 16 15 C 0.17 3.09 4.48 -67.12 -0.30 2.79 16 16 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 17 N -0.71 -17.43 5.40 -52.64 -0.28 -17.71 16 18 C -0.25 -6.72 9.97 -15.06 -0.15 -6.87 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.16 -2.55 7.43 -25.92 -0.19 -2.74 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.60 7.66 -51.93 -0.40 0.20 16 34 H 0.40 3.59 8.46 -40.82 -0.35 3.25 16 35 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 10.06 7.92 -40.82 -0.32 9.73 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -33.59 358.32 -7.55 -41.15 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.49 Total: 8.81 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.75 Total: -5.06 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.22 Total: -58.85 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.59 -7.55 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086170698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.597 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds