Wall clock time and date at job start Tue Mar 31 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35363 * 127.24874 * 2 1 4 4 N 1.35032 * 107.23257 * 180.12908 * 3 2 1 5 5 H 0.97001 * 124.88983 * 179.89862 * 4 3 2 6 6 N 1.28466 * 110.22744 * 359.62253 * 4 3 2 7 7 C 1.31809 * 110.07776 * 0.23353 * 6 4 3 8 8 C 1.47706 * 126.52538 * 179.97438 * 7 6 4 9 9 O 1.21568 * 120.00695 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99832 * 0.02698 * 8 7 6 11 11 C 1.46493 * 120.00049 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47222 * 180.02562 * 11 10 8 13 13 H 1.09008 * 110.43085 * 307.53904 * 12 11 10 14 14 C 1.54888 * 110.48676 * 70.22152 * 12 11 10 15 15 C 1.54896 * 102.74668 * 156.62567 * 14 12 11 16 16 C 1.54266 * 104.19416 * 322.05732 * 15 14 12 17 17 H 1.09001 * 110.07147 * 142.91819 * 16 15 14 18 18 N 1.46500 * 110.03407 * 264.32654 * 16 15 14 19 19 C 1.36936 * 120.00057 * 272.16930 * 18 16 15 20 20 H 1.08002 * 119.99889 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00168 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00000 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00308 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46774 * 60.00308 * 23 21 19 25 25 H 1.48496 * 109.47338 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46987 * 300.00486 * 23 21 19 27 27 C 1.53876 * 106.59885 * 23.61357 * 16 15 14 28 28 H 1.08997 * 109.47232 * 270.27089 * 1 2 3 29 29 H 1.08998 * 109.47309 * 30.27620 * 1 2 3 30 30 H 1.08998 * 109.46567 * 150.27313 * 1 2 3 31 31 H 1.08002 * 126.38645 * 359.97438 * 3 2 1 32 32 H 0.97003 * 119.99640 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.47156 * 299.99257 * 11 10 8 34 34 H 1.08997 * 109.47685 * 60.00011 * 11 10 8 35 35 H 1.09003 * 110.75733 * 274.93475 * 14 12 11 36 36 H 1.08997 * 110.75758 * 38.30731 * 14 12 11 37 37 H 1.08999 * 110.48499 * 203.38195 * 15 14 12 38 38 H 1.08997 * 110.60076 * 80.78891 * 15 14 12 39 39 H 0.97000 * 119.99833 * 92.16398 * 18 16 15 40 40 H 0.97006 * 120.00143 * 179.97438 * 22 21 19 41 41 H 1.09006 * 110.02984 * 240.71573 * 27 16 15 42 42 H 1.08999 * 110.03442 * 119.28660 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 -0.0029 5 1 4.3888 1.1730 -0.0050 6 7 3.5999 -0.6693 0.0033 7 6 2.3636 -1.1264 0.0054 8 6 1.9506 -2.5445 0.0117 9 8 0.7699 -2.8339 0.0127 10 7 2.8829 -3.5179 0.0164 11 6 2.4734 -4.9244 0.0232 12 6 3.7158 -5.8173 0.0282 13 1 4.3884 -5.5380 -0.7829 14 6 4.4420 -5.7283 1.3934 15 6 5.2322 -7.0594 1.4477 16 6 4.2783 -8.0917 0.8120 17 1 4.8450 -8.8078 0.2167 18 7 3.5274 -8.7916 1.8572 19 6 4.0482 -9.9174 2.4372 20 1 5.0124 -10.2897 2.1237 21 6 3.3370 -10.5802 3.4280 22 7 2.1618 -10.1269 3.8096 23 14 4.0471 -12.1165 4.2187 24 1 5.3420 -11.7863 4.8665 25 1 3.0994 -12.6310 5.2395 26 1 4.2643 -13.1535 3.1781 27 6 3.3142 -7.3020 -0.0906 28 1 -0.3633 0.0049 1.0276 29 1 -0.3634 0.8875 -0.5181 30 1 -0.3632 -0.8924 -0.5096 31 1 2.0221 2.1138 -0.0004 32 1 3.8251 -3.2870 0.0153 33 1 1.8786 -5.1253 0.9143 34 1 1.8785 -5.1340 -0.8657 35 1 5.1203 -4.8753 1.4152 36 1 3.7228 -5.6723 2.2105 37 1 5.4536 -7.3297 2.4801 38 1 6.1524 -6.9830 0.8685 39 1 2.6613 -8.4574 2.1385 40 1 1.6646 -10.5902 4.5018 41 1 2.2877 -7.4394 0.2491 42 1 3.4136 -7.6342 -1.1240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086690035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:46 Heat of formation + Delta-G solvation = 32.689953 kcal Electronic energy + Delta-G solvation = -22734.617977 eV Core-core repulsion = 19329.746399 eV Total energy + Delta-G solvation = -3404.871578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.93079 -39.46663 -37.99812 -34.87889 -33.31214 -33.21132 -31.68616 -30.50334 -28.89545 -27.46386 -27.16425 -24.96771 -23.34092 -22.94608 -20.88157 -20.38011 -19.64091 -19.07784 -18.47649 -17.14744 -17.00080 -16.14761 -16.02431 -15.14777 -14.82753 -14.58106 -14.31094 -13.78693 -13.48178 -13.34046 -13.20894 -13.14963 -13.04702 -12.57925 -12.31927 -12.11031 -11.35782 -11.14548 -11.09432 -10.76313 -10.68680 -10.53459 -10.42459 -10.19749 -10.16350 -10.04745 -9.83038 -9.71118 -9.57021 -9.14533 -8.93357 -8.82710 -6.88252 -5.71104 -2.99260 1.37544 1.83615 2.55154 3.21169 3.35276 3.47119 3.51496 3.52640 4.24156 4.50453 4.63711 4.89612 4.97946 5.03170 5.09075 5.18828 5.26653 5.60455 5.62335 5.65833 5.73167 5.79705 5.83503 5.93021 5.98632 6.08375 6.16042 6.19475 6.27919 6.30475 6.42222 6.48748 6.54171 6.65877 6.72189 6.83198 6.97811 7.16535 7.39398 7.67153 7.75367 8.21981 8.48299 9.58636 10.18866 10.52876 11.51506 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.002689 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.818475 B =10408.827742 C =10726.128360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.145 4.145 3 C -0.023 4.023 4 N -0.383 5.383 5 H 0.446 0.554 6 N -0.259 5.259 7 C -0.010 4.010 8 C 0.599 3.401 9 O -0.530 6.530 10 N -0.712 5.712 11 C 0.126 3.874 12 C -0.103 4.103 13 H 0.074 0.926 14 C -0.113 4.113 15 C -0.146 4.146 16 C 0.175 3.825 17 H 0.048 0.952 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.121 4.121 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.184 0.816 32 H 0.405 0.595 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 24.736 -10.253 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.155 4.155 3 C -0.167 4.167 4 N -0.096 5.096 5 H 0.291 0.709 6 N -0.095 5.095 7 C -0.172 4.172 8 C 0.383 3.617 9 O -0.405 6.405 10 N -0.363 5.363 11 C 0.003 3.997 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.150 4.150 15 C -0.187 4.187 16 C 0.064 3.936 17 H 0.066 0.934 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.160 4.160 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.201 0.799 32 H 0.240 0.760 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.018 23.934 -10.196 26.190 hybrid contribution 0.327 0.105 0.657 0.741 sum 3.345 24.039 -9.539 26.078 Atomic orbital electron populations 1.20198 0.87965 1.03140 1.02567 1.20437 0.97716 0.90419 1.06963 1.22705 0.84163 1.00584 1.09242 1.43208 1.08599 1.04416 1.53407 0.70927 1.73524 1.23205 0.93872 1.18932 1.21969 0.89434 0.95334 1.10423 1.16872 0.85556 0.82552 0.76725 1.90786 1.16834 1.82633 1.50224 1.45903 1.09886 1.06401 1.74146 1.21582 0.97170 0.78290 1.02654 1.22234 0.95582 0.95649 0.98736 0.90718 1.22497 0.98777 0.97611 0.96134 1.23118 0.97776 0.95671 1.02102 1.20800 0.91425 0.91899 0.89471 0.93418 1.42543 1.21497 1.29655 1.42493 1.19213 1.01616 1.01641 1.14504 0.91311 1.24734 0.96913 0.99518 0.99870 1.69652 1.13387 1.41616 1.33491 0.86293 0.77851 0.83274 0.78914 1.21366 1.21756 1.21337 1.22466 1.01180 0.92394 0.99952 0.91307 0.92002 0.89763 0.79910 0.76013 0.90730 0.91396 0.92954 0.91292 0.91018 0.93365 0.78238 0.93503 0.90844 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.93 36.01 0.36 -0.40 16 2 C -0.15 -1.50 6.25 -104.40 -0.65 -2.15 16 3 C -0.02 -0.16 11.97 -17.17 -0.21 -0.36 16 4 N -0.38 -2.60 6.83 30.47 0.21 -2.39 16 5 H 0.45 1.24 8.96 -190.44 -1.71 -0.47 16 6 N -0.26 -2.71 11.92 33.42 0.40 -2.32 16 7 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 8 C 0.60 8.66 7.82 -12.39 -0.10 8.56 16 9 O -0.53 -9.09 15.11 5.31 0.08 -9.01 16 10 N -0.71 -9.21 5.44 -61.30 -0.33 -9.55 16 11 C 0.13 1.75 4.96 -4.04 -0.02 1.73 16 12 C -0.10 -1.41 2.89 -88.96 -0.26 -1.67 16 13 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 14 C -0.11 -1.71 6.19 -24.74 -0.15 -1.86 16 15 C -0.15 -2.58 6.54 -25.07 -0.16 -2.74 16 16 C 0.17 3.45 3.55 -66.81 -0.24 3.21 16 17 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 18 N -0.72 -18.11 5.08 -52.34 -0.27 -18.38 16 19 C -0.24 -6.66 9.96 -15.06 -0.15 -6.81 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 23 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C -0.12 -1.97 6.14 -25.61 -0.16 -2.13 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.97 6.72 -51.93 -0.35 0.62 16 31 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.41 4.60 8.17 -40.82 -0.33 4.26 16 33 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 37 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.38 10.29 7.52 -40.82 -0.31 9.98 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 1.30 7.31 -51.93 -0.38 0.92 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -34.15 349.12 -9.04 -43.19 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.67 Total: 9.25 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.42 Total: -5.85 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.73 Total: -60.45 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.15 -9.04 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086690035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.884 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds