Wall clock time and date at job start Tue Mar 31 2020 04:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35363 * 127.24874 * 2 1 4 4 N 1.35032 * 107.23257 * 180.12908 * 3 2 1 5 5 H 0.97001 * 124.88983 * 179.89862 * 4 3 2 6 6 N 1.28466 * 110.22744 * 359.62253 * 4 3 2 7 7 C 1.31809 * 110.07776 * 0.23353 * 6 4 3 8 8 C 1.47706 * 126.52538 * 179.97438 * 7 6 4 9 9 O 1.21568 * 120.00695 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99832 * 0.02698 * 8 7 6 11 11 C 1.46493 * 120.00049 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47222 * 180.02562 * 11 10 8 13 13 H 1.09008 * 110.43085 * 307.53904 * 12 11 10 14 14 C 1.54888 * 110.48676 * 70.22152 * 12 11 10 15 15 C 1.54896 * 102.74668 * 156.62567 * 14 12 11 16 16 C 1.54266 * 104.19416 * 322.05732 * 15 14 12 17 17 H 1.09001 * 110.07147 * 142.91819 * 16 15 14 18 18 N 1.46500 * 110.03407 * 264.32654 * 16 15 14 19 19 C 1.36936 * 120.00057 * 272.16930 * 18 16 15 20 20 H 1.08002 * 119.99889 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00168 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00000 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00308 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46774 * 60.00308 * 23 21 19 25 25 H 1.48496 * 109.47338 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46987 * 300.00486 * 23 21 19 27 27 C 1.53876 * 106.59885 * 23.61357 * 16 15 14 28 28 H 1.08997 * 109.47232 * 270.27089 * 1 2 3 29 29 H 1.08998 * 109.47309 * 30.27620 * 1 2 3 30 30 H 1.08998 * 109.46567 * 150.27313 * 1 2 3 31 31 H 1.08002 * 126.38645 * 359.97438 * 3 2 1 32 32 H 0.97003 * 119.99640 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.47156 * 299.99257 * 11 10 8 34 34 H 1.08997 * 109.47685 * 60.00011 * 11 10 8 35 35 H 1.09003 * 110.75733 * 274.93475 * 14 12 11 36 36 H 1.08997 * 110.75758 * 38.30731 * 14 12 11 37 37 H 1.08999 * 110.48499 * 203.38195 * 15 14 12 38 38 H 1.08997 * 110.60076 * 80.78891 * 15 14 12 39 39 H 0.97000 * 119.99833 * 92.16398 * 18 16 15 40 40 H 0.97006 * 120.00143 * 179.97438 * 22 21 19 41 41 H 1.09006 * 110.02984 * 240.71573 * 27 16 15 42 42 H 1.08999 * 110.03442 * 119.28660 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 -0.0029 5 1 4.3888 1.1730 -0.0050 6 7 3.5999 -0.6693 0.0033 7 6 2.3636 -1.1264 0.0054 8 6 1.9506 -2.5445 0.0117 9 8 0.7699 -2.8339 0.0127 10 7 2.8829 -3.5179 0.0164 11 6 2.4734 -4.9244 0.0232 12 6 3.7158 -5.8173 0.0282 13 1 4.3884 -5.5380 -0.7829 14 6 4.4420 -5.7283 1.3934 15 6 5.2322 -7.0594 1.4477 16 6 4.2783 -8.0917 0.8120 17 1 4.8450 -8.8078 0.2167 18 7 3.5274 -8.7916 1.8572 19 6 4.0482 -9.9174 2.4372 20 1 5.0124 -10.2897 2.1237 21 6 3.3370 -10.5802 3.4280 22 7 2.1618 -10.1269 3.8096 23 14 4.0471 -12.1165 4.2187 24 1 5.3420 -11.7863 4.8665 25 1 3.0994 -12.6310 5.2395 26 1 4.2643 -13.1535 3.1781 27 6 3.3142 -7.3020 -0.0906 28 1 -0.3633 0.0049 1.0276 29 1 -0.3634 0.8875 -0.5181 30 1 -0.3632 -0.8924 -0.5096 31 1 2.0221 2.1138 -0.0004 32 1 3.8251 -3.2870 0.0153 33 1 1.8786 -5.1253 0.9143 34 1 1.8785 -5.1340 -0.8657 35 1 5.1203 -4.8753 1.4152 36 1 3.7228 -5.6723 2.2105 37 1 5.4536 -7.3297 2.4801 38 1 6.1524 -6.9830 0.8685 39 1 2.6613 -8.4574 2.1385 40 1 1.6646 -10.5902 4.5018 41 1 2.2877 -7.4394 0.2491 42 1 3.4136 -7.6342 -1.1240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086690035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:45 Heat of formation + Delta-G solvation = 7.563537 kcal Electronic energy + Delta-G solvation = -22735.707540 eV Core-core repulsion = 19329.746399 eV Total energy + Delta-G solvation = -3405.961141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.61447 -40.60878 -39.37703 -36.30795 -34.97992 -33.97068 -32.78004 -32.06037 -30.23037 -28.86574 -28.01248 -26.25488 -25.16115 -24.09421 -21.62235 -21.46187 -20.89960 -20.51368 -19.15711 -19.06605 -18.01992 -17.29698 -16.92656 -16.60187 -16.35146 -15.77529 -15.68823 -15.11060 -15.05857 -14.45112 -14.26926 -14.20537 -13.99857 -13.78043 -13.51774 -13.12465 -13.03808 -12.93304 -12.45864 -12.37986 -12.16748 -11.95754 -11.85099 -11.71212 -11.61930 -11.48950 -11.41328 -11.08018 -10.87461 -10.48135 -10.06435 -9.76971 -8.95254 -7.91662 -5.19316 0.52194 1.19190 1.46606 1.49841 1.55902 1.92881 2.31751 2.35315 2.58006 3.39453 3.43476 3.67524 3.79507 3.84908 3.96980 4.18840 4.22080 4.43527 4.51785 4.55858 4.58579 4.61113 4.69413 4.79901 4.85508 4.91477 4.93991 5.05099 5.08771 5.14589 5.20960 5.22945 5.36027 5.45015 5.51392 5.55837 5.59318 5.66922 6.16518 6.31597 6.48377 6.89726 7.17835 7.36053 8.16447 8.37507 9.31944 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.002689 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.818475 B =10408.827742 C =10726.128360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.178 4.178 3 C 0.008 3.992 4 N -0.362 5.362 5 H 0.466 0.534 6 N -0.270 5.270 7 C -0.044 4.044 8 C 0.593 3.407 9 O -0.569 6.569 10 N -0.703 5.703 11 C 0.133 3.867 12 C -0.084 4.084 13 H 0.108 0.892 14 C -0.106 4.106 15 C -0.139 4.139 16 C 0.162 3.838 17 H 0.046 0.954 18 N -0.735 5.735 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.972 3.028 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.277 1.277 27 C -0.116 4.116 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.231 0.769 32 H 0.415 0.585 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.052 0.948 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 27.181 -11.579 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.189 4.189 3 C -0.137 4.137 4 N -0.079 5.079 5 H 0.314 0.686 6 N -0.108 5.108 7 C -0.203 4.203 8 C 0.379 3.621 9 O -0.447 6.447 10 N -0.354 5.354 11 C 0.010 3.990 12 C -0.102 4.102 13 H 0.126 0.874 14 C -0.144 4.144 15 C -0.179 4.179 16 C 0.054 3.946 17 H 0.064 0.936 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.801 3.199 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.204 1.204 27 C -0.155 4.155 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.248 0.752 32 H 0.252 0.748 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.202 0.798 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.276 26.405 -11.561 29.304 hybrid contribution -0.276 -0.532 1.009 1.174 sum 5.000 25.873 -10.552 28.386 Atomic orbital electron populations 1.20133 0.88023 1.03050 1.02260 1.20724 0.98274 0.91017 1.08853 1.23294 0.83078 1.01660 1.05674 1.43361 1.09796 1.03570 1.51170 0.68569 1.73439 1.22301 0.95608 1.19431 1.21767 0.90849 0.94549 1.13142 1.17289 0.85154 0.83817 0.75882 1.90758 1.18385 1.83473 1.52040 1.45774 1.10277 1.05675 1.73681 1.21375 0.97041 0.79152 1.01459 1.22103 0.95601 0.93670 0.98865 0.87401 1.22429 0.98463 0.97438 0.96032 1.22957 0.98711 0.95944 1.00253 1.21131 0.92208 0.92464 0.88807 0.93609 1.42768 1.21445 1.29623 1.43628 1.19622 1.01478 1.01968 1.13816 0.90667 1.25559 0.97549 1.02942 1.01182 1.69826 1.14946 1.43187 1.34402 0.85233 0.77068 0.79761 0.77850 1.20468 1.22411 1.20351 1.22375 0.99054 0.93824 1.00207 0.91794 0.89059 0.92794 0.75241 0.74829 0.93418 0.91316 0.89957 0.94073 0.94320 0.90346 0.79807 0.94201 0.92967 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 9.93 71.24 0.71 -0.71 16 2 C -0.18 -3.42 6.25 -19.72 -0.12 -3.55 16 3 C 0.01 0.08 11.97 83.54 1.00 1.08 16 4 N -0.36 -3.69 6.83 -57.51 -0.39 -4.08 16 5 H 0.47 0.70 8.96 -219.99 -1.97 -1.27 16 6 N -0.27 -5.10 11.92 -48.18 -0.57 -5.68 16 7 C -0.04 -1.06 7.13 42.46 0.30 -0.75 16 8 C 0.59 17.49 7.82 86.74 0.68 18.17 16 9 O -0.57 -20.58 15.11 -3.93 -0.06 -20.64 16 10 N -0.70 -17.89 5.44 -466.11 -2.54 -20.43 16 11 C 0.13 3.71 4.96 86.38 0.43 4.14 16 12 C -0.08 -2.16 2.89 -9.72 -0.03 -2.18 16 13 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 14 C -0.11 -3.09 6.19 31.89 0.20 -2.90 16 15 C -0.14 -4.74 6.54 31.67 0.21 -4.53 16 16 C 0.16 6.37 3.55 45.72 0.16 6.53 16 17 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 18 N -0.73 -37.89 5.08 -319.51 -1.62 -39.51 16 19 C -0.24 -13.42 9.96 84.03 0.84 -12.58 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 22 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 23 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 C -0.12 -3.70 6.14 31.32 0.19 -3.51 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.31 6.72 -2.39 -0.02 1.30 16 31 H 0.23 -0.04 8.06 -2.91 -0.02 -0.06 16 32 H 0.41 8.74 8.17 -92.71 -0.76 7.99 16 33 H 0.05 1.59 8.02 -2.39 -0.02 1.57 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.43 7.96 -2.39 -0.02 1.41 16 37 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 39 H 0.37 20.79 7.52 -92.71 -0.70 20.09 16 40 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 41 H 0.05 1.91 7.31 -2.38 -0.02 1.89 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -78.02 349.12 -0.22 -78.23 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -2.37 Total: 29.06 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 5.03 Total: -5.07 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -4.84 Total: -130.87 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -78.02 -0.22 -78.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086690035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.795 kcal (2) G-P(sol) polarization free energy of solvation -78.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds