Wall clock time and date at job start Tue Mar 31 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39666 * 126.07077 * 2 1 4 4 C 1.38407 * 105.36171 * 179.97438 * 3 2 1 5 5 C 1.47162 * 126.88327 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99920 * 184.66736 * 5 4 3 7 7 N 1.34775 * 120.00386 * 4.65970 * 5 4 3 8 8 C 1.46496 * 120.00198 * 174.39477 * 7 5 4 9 9 H 1.08998 * 110.64111 * 328.14680 * 8 7 5 10 10 C 1.55156 * 110.71921 * 91.48136 * 8 7 5 11 11 C 1.54908 * 101.58341 * 153.86386 * 10 8 7 12 12 N 1.47427 * 104.83256 * 322.99282 * 11 10 8 13 13 C 1.36938 * 125.64564 * 204.14809 * 12 11 10 14 14 H 1.08006 * 119.99333 * 179.97438 * 13 12 11 15 15 C 1.38803 * 120.00304 * 359.97278 * 13 12 11 16 16 N 1.31617 * 120.00319 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00212 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46923 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47346 * 120.00014 * 17 15 13 20 20 H 1.48500 * 109.47182 * 240.00373 * 17 15 13 21 21 C 1.47016 * 108.70128 * 24.12624 * 12 11 10 22 22 H 1.09002 * 109.88296 * 239.52282 * 21 12 11 23 23 C 1.53002 * 109.88500 * 118.51833 * 21 12 11 24 24 N 1.36598 * 106.23147 * 0.25734 * 4 3 2 25 25 C 1.46491 * 125.19140 * 179.73779 * 24 4 3 26 26 N 1.28444 * 109.61659 * 359.55937 * 24 4 3 27 27 H 1.08994 * 109.47108 * 90.00675 * 1 2 3 28 28 H 1.08998 * 109.47328 * 210.00479 * 1 2 3 29 29 H 1.08993 * 109.47403 * 330.00272 * 1 2 3 30 30 H 1.08002 * 127.31988 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99356 * 354.39938 * 7 5 4 32 32 H 1.09007 * 111.00293 * 35.79366 * 10 8 7 33 33 H 1.09000 * 111.00574 * 271.94219 * 10 8 7 34 34 H 1.09001 * 110.37268 * 204.15386 * 11 10 8 35 35 H 1.09003 * 110.36762 * 81.83093 * 11 10 8 36 36 H 0.96999 * 120.00338 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47422 * 61.44698 * 23 21 12 38 38 H 1.08994 * 109.47447 * 181.45277 * 23 21 12 39 39 H 1.09007 * 109.46527 * 301.44901 * 23 21 12 40 40 H 1.08998 * 109.47289 * 90.47449 * 25 24 4 41 41 H 1.09001 * 109.47376 * 210.47943 * 25 24 4 42 42 H 1.09004 * 109.47305 * 330.47763 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6240 0.6395 0.0006 5 6 4.8664 1.4282 0.0003 6 8 5.9425 0.8677 -0.0848 7 7 4.8119 2.7715 0.0942 8 6 6.0481 3.5480 0.2177 9 1 6.8056 2.9809 0.7586 10 6 6.5701 3.9748 -1.1797 11 6 7.3727 5.2539 -0.8345 12 7 6.5933 5.9129 0.2293 13 6 6.6241 7.2484 0.5306 14 1 6.0124 7.6353 1.3322 15 6 7.4415 8.1047 -0.1941 16 7 8.1867 7.6333 -1.1712 17 14 7.4841 9.9264 0.2173 18 1 6.5612 10.2001 1.3481 19 1 8.8652 10.3154 0.5996 20 1 7.0590 10.7119 -0.9691 21 6 5.7773 4.8989 0.9128 22 1 4.7210 5.1543 0.8280 23 6 6.1757 4.8179 2.3878 24 7 3.5173 -0.7223 -0.0050 25 6 4.6449 -1.6574 -0.0119 26 7 2.2775 -1.0578 0.0006 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8899 0.5137 30 1 2.0206 2.1639 -0.0004 31 1 3.9541 3.2242 0.0801 32 1 5.7434 4.2020 -1.8529 33 1 7.2190 3.2092 -1.6049 34 1 7.4469 5.9024 -1.7075 35 1 8.3660 4.9918 -0.4701 36 1 8.7576 8.2317 -1.6779 37 1 5.9920 5.7794 2.8672 38 1 5.5850 4.0467 2.8820 39 1 7.2344 4.5698 2.4650 40 1 4.9219 -1.9003 1.0139 41 1 4.3580 -2.5689 -0.5364 42 1 5.4942 -1.1989 -0.5186 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088483900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:25 Heat of formation + Delta-G solvation = 46.169390 kcal Electronic energy + Delta-G solvation = -23552.081392 eV Core-core repulsion = 20147.794327 eV Total energy + Delta-G solvation = -3404.287066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.56449 -40.87660 -39.12254 -35.83217 -34.90332 -33.96007 -32.22128 -31.90176 -30.53810 -30.27879 -26.80267 -26.37307 -25.84133 -24.13404 -22.33553 -21.77275 -21.61965 -20.36555 -18.76490 -18.63785 -17.62727 -17.35892 -16.90115 -16.52488 -15.84466 -15.72690 -15.51082 -15.09931 -14.79427 -14.37316 -14.31315 -14.11478 -14.00958 -13.71645 -13.29022 -13.23844 -13.18362 -13.11595 -12.93056 -12.74443 -12.61257 -12.25185 -12.12793 -11.93512 -11.70039 -11.56947 -11.44802 -11.16649 -10.72653 -10.33432 -9.99121 -9.82771 -8.88420 -7.73379 -5.18279 0.17699 1.34504 1.50438 1.50790 1.53892 1.60755 2.09326 2.13023 2.53404 3.37339 3.42390 3.51887 3.65791 3.84370 3.94211 4.05778 4.19953 4.27690 4.32199 4.41600 4.51332 4.59902 4.63351 4.66002 4.69455 4.81628 4.92413 4.93359 5.04120 5.04891 5.11807 5.16303 5.34416 5.51985 5.55101 5.58968 5.61971 5.75707 5.81991 6.32373 6.38367 6.99157 7.07529 7.12999 7.80574 8.43559 9.28651 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.003382 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.402070 B = 8276.350637 C = 8721.974151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.013 3.987 3 C -0.179 4.179 4 C -0.053 4.053 5 C 0.593 3.407 6 O -0.571 6.571 7 N -0.686 5.686 8 C 0.156 3.844 9 H 0.086 0.914 10 C -0.139 4.139 11 C 0.157 3.843 12 N -0.614 5.614 13 C -0.224 4.224 14 H 0.086 0.914 15 C -0.069 4.069 16 N -0.951 5.951 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.298 1.298 20 H -0.293 1.293 21 C 0.151 3.849 22 H 0.055 0.945 23 C -0.148 4.148 24 N -0.268 5.268 25 C 0.080 3.920 26 N -0.298 5.298 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.189 0.811 31 H 0.416 0.584 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.077 0.923 35 H -0.014 1.014 36 H 0.245 0.755 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 -15.296 3.004 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.143 4.143 3 C -0.207 4.207 4 C -0.181 4.181 5 C 0.380 3.620 6 O -0.451 6.451 7 N -0.337 5.337 8 C 0.050 3.950 9 H 0.104 0.896 10 C -0.178 4.178 11 C 0.032 3.968 12 N -0.339 5.339 13 C -0.353 4.353 14 H 0.104 0.896 15 C -0.261 4.261 16 N -0.601 5.601 17 Si 0.806 3.194 18 H -0.188 1.188 19 H -0.225 1.225 20 H -0.221 1.221 21 C 0.044 3.956 22 H 0.073 0.927 23 C -0.207 4.207 24 N -0.055 5.055 25 C -0.059 4.059 26 N -0.133 5.133 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.206 0.794 31 H 0.254 0.746 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.004 0.996 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.332 -16.766 2.924 21.620 hybrid contribution 0.538 2.001 0.009 2.072 sum -12.795 -14.766 2.933 19.757 Atomic orbital electron populations 1.20224 0.83899 1.04343 1.03816 1.22656 0.98716 0.88350 1.04535 1.22546 0.89327 1.01764 1.07103 1.21383 0.95745 0.85730 1.15283 1.17053 0.86641 0.82334 0.76004 1.90758 1.31114 1.71354 1.51851 1.45495 1.10418 1.04916 1.72847 1.21802 0.85790 0.90943 0.96420 0.89600 1.23212 1.00251 0.97806 0.96552 1.21674 0.90748 0.90945 0.93467 1.44729 1.48821 1.03235 1.37125 1.19432 1.20069 0.82645 1.13183 0.89574 1.25587 0.99370 1.02256 0.98874 1.70042 1.31329 1.34030 1.24695 0.85022 0.76938 0.80072 0.77379 1.18837 1.22517 1.22068 1.21195 0.95360 0.87164 0.91863 0.92738 1.22133 1.00528 1.01259 0.96759 1.45774 1.05509 1.04549 1.49706 1.22487 0.85145 0.92815 1.05440 1.73120 0.89739 1.28895 1.21546 0.89760 0.90794 0.88461 0.79414 0.74632 0.91059 0.91391 0.90460 0.99594 0.94498 0.93288 0.91129 0.94471 0.88961 0.87073 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.45 71.24 0.74 -0.04 16 2 C 0.01 0.27 7.22 43.05 0.31 0.58 16 3 C -0.18 -3.57 10.44 22.66 0.24 -3.34 16 4 C -0.05 -1.33 6.96 40.79 0.28 -1.05 16 5 C 0.59 16.97 7.79 86.59 0.67 17.65 16 6 O -0.57 -19.54 14.36 -4.12 -0.06 -19.60 16 7 N -0.69 -18.31 5.16 -440.44 -2.27 -20.58 16 8 C 0.16 5.27 2.81 46.18 0.13 5.40 16 9 H 0.09 3.14 7.34 -2.39 -0.02 3.12 16 10 C -0.14 -5.29 6.77 31.99 0.22 -5.08 16 11 C 0.16 7.68 5.89 86.85 0.51 8.19 16 12 N -0.61 -29.80 3.13 -668.26 -2.09 -31.89 16 13 C -0.22 -11.91 9.87 84.03 0.83 -11.08 16 14 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 15 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 16 N -0.95 -55.79 10.09 21.65 0.22 -55.57 16 17 Si 0.98 44.60 29.55 68.60 2.03 46.63 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 C 0.15 5.62 3.47 45.34 0.16 5.78 16 22 H 0.06 1.88 7.72 -2.39 -0.02 1.86 16 23 C -0.15 -5.06 9.15 71.98 0.66 -4.41 16 24 N -0.27 -6.62 3.75 -356.04 -1.33 -7.95 16 25 C 0.08 1.57 10.89 127.77 1.39 2.96 16 26 N -0.30 -7.26 11.90 -47.50 -0.57 -7.83 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.19 2.52 7.58 -2.91 -0.02 2.50 16 31 H 0.42 8.77 7.40 -92.71 -0.69 8.09 16 32 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 4.30 5.87 -2.39 -0.01 4.29 16 35 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 2.25 6.20 -2.39 -0.01 2.24 16 Total: -1.00 -69.09 344.14 2.87 -66.22 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.34 Total: 18.33 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.61 Total: 12.24 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -6.05 Total: -123.83 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.06 Total: -19.60 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.09 2.87 -66.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088483900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.391 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds