Wall clock time and date at job start Tue Mar 31 2020 03:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 126.12806 * 2 1 4 4 C 1.39871 * 107.91973 * 180.02562 * 3 2 1 5 5 N 1.30845 * 108.20014 * 359.74200 * 4 3 2 6 6 N 1.34953 * 126.12503 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.03755 * 359.95437 * 6 2 1 8 8 C 1.50697 * 109.47349 * 89.99846 * 7 6 2 9 9 O 1.21286 * 119.99962 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00211 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99897 * 180.02562 * 10 8 7 12 12 H 1.09006 * 110.64409 * 328.14332 * 11 10 8 13 13 C 1.55282 * 110.91265 * 91.29058 * 11 10 8 14 14 C 1.54905 * 101.53029 * 153.84797 * 13 11 10 15 15 N 1.47419 * 104.92834 * 323.13017 * 14 13 11 16 16 C 1.36943 * 125.64787 * 204.05668 * 15 14 13 17 17 H 1.07999 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99832 * 0.02562 * 16 15 14 19 19 N 1.31616 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99740 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47746 * 60.00204 * 20 18 16 22 22 H 1.48506 * 109.47230 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47299 * 299.99977 * 20 18 16 24 24 C 1.47023 * 108.70585 * 24.07052 * 15 14 13 25 25 H 1.09002 * 109.88373 * 239.52633 * 24 15 14 26 26 C 1.52999 * 109.88034 * 118.51461 * 24 15 14 27 27 H 1.09002 * 109.47109 * 269.97171 * 1 2 3 28 28 H 1.08996 * 109.47119 * 29.97400 * 1 2 3 29 29 H 1.09002 * 109.47159 * 149.97231 * 1 2 3 30 30 H 1.07988 * 126.04025 * 0.02562 * 3 2 1 31 31 H 1.07997 * 125.90068 * 180.02562 * 4 3 2 32 32 H 1.09011 * 109.47212 * 330.00284 * 7 6 2 33 33 H 1.08995 * 109.47459 * 210.00530 * 7 6 2 34 34 H 0.96997 * 119.99748 * 0.02562 * 10 8 7 35 35 H 1.09001 * 110.95548 * 35.81957 * 13 11 10 36 36 H 1.08996 * 111.09853 * 271.94020 * 13 11 10 37 37 H 1.09002 * 110.36692 * 204.23391 * 14 13 11 38 38 H 1.08995 * 110.36664 * 82.02192 * 14 13 11 39 39 H 0.97000 * 120.00077 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.47282 * 61.45462 * 26 24 15 41 41 H 1.09003 * 109.47218 * 181.45554 * 26 24 15 42 42 H 1.09004 * 109.47562 * 301.45759 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 7 3.6333 -0.6526 0.0047 6 7 2.3026 -1.0901 -0.0005 7 6 1.8539 -2.4846 -0.0002 8 6 1.6990 -2.9629 -1.4208 9 8 1.9403 -2.2128 -2.3429 10 7 1.2935 -4.2244 -1.6668 11 6 1.1435 -4.6894 -3.0479 12 1 0.8414 -3.8690 -3.6990 13 6 2.4580 -5.3384 -3.5600 14 6 1.9229 -6.3089 -4.6424 15 7 0.6524 -6.8216 -4.0981 16 6 0.0575 -8.0064 -4.4411 17 1 -0.8778 -8.2934 -3.9837 18 6 0.6567 -8.8385 -5.3769 19 7 1.7968 -8.4890 -5.9339 20 14 -0.1552 -10.4543 -5.8453 21 1 -1.5007 -10.1859 -6.4135 22 1 0.6791 -11.1527 -6.8561 23 1 -0.2890 -11.3092 -4.6386 24 6 0.1296 -5.8502 -3.1261 25 1 0.0294 -6.3214 -2.1483 26 6 -1.2301 -5.3271 -3.5933 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5143 30 1 1.9741 2.1209 0.0004 31 1 4.5084 1.2890 -0.0004 32 1 0.8956 -2.5579 0.5143 33 1 2.5900 -3.1031 0.5133 34 1 1.1009 -4.8244 -0.9294 35 1 2.9609 -5.8831 -2.7610 36 1 3.1198 -4.5912 -3.9979 37 1 2.6260 -7.1269 -4.7994 38 1 1.7475 -5.7757 -5.5767 39 1 2.2156 -9.0706 -6.5875 40 1 -1.9359 -6.1555 -3.6567 41 1 -1.5995 -4.5888 -2.8815 42 1 -1.1240 -4.8645 -4.5746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088890933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:38 Heat of formation + Delta-G solvation = 71.372394 kcal Electronic energy + Delta-G solvation = -23493.384873 eV Core-core repulsion = 20090.190692 eV Total energy + Delta-G solvation = -3403.194181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37979 -39.64483 -37.61242 -34.13136 -33.58033 -32.27451 -31.95369 -30.43608 -28.93354 -27.46154 -27.05475 -24.60315 -24.03584 -21.51954 -20.95053 -20.26465 -20.07424 -19.38499 -17.36876 -16.98713 -16.74068 -15.78017 -15.45418 -14.90546 -14.75957 -14.17673 -14.06152 -13.83233 -13.72923 -13.41684 -13.11170 -12.89611 -12.83412 -12.46656 -12.20096 -12.17976 -11.94410 -11.62280 -11.19674 -10.89694 -10.87586 -10.67625 -10.63988 -10.50120 -10.16312 -10.05433 -9.80804 -9.62277 -9.24492 -8.76871 -8.67436 -8.56678 -6.92389 -5.69243 -3.12737 1.71858 2.27004 2.55335 2.80115 3.26904 3.37203 3.41847 3.43219 4.34509 4.43943 4.48205 4.63209 4.78750 4.88106 5.04421 5.22240 5.23548 5.37182 5.48580 5.54748 5.56683 5.58631 5.65575 5.75782 6.04715 6.05976 6.17770 6.23681 6.27411 6.46122 6.52271 6.58062 6.66433 6.79934 6.85517 7.04134 7.46435 7.56556 7.57671 7.64983 7.81172 8.21594 8.31229 9.16219 9.77200 10.40714 11.33956 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.039200 B = 0.003134 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.106413 B = 8931.124678 C = 9316.873461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 C -0.277 4.277 4 C 0.048 3.952 5 N -0.288 5.288 6 N -0.354 5.354 7 C 0.112 3.888 8 C 0.494 3.506 9 O -0.522 6.522 10 N -0.711 5.711 11 C 0.136 3.864 12 H 0.093 0.907 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.156 3.844 25 H 0.036 0.964 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.182 0.818 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.399 0.601 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.014 0.986 39 H 0.253 0.747 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 14.678 14.707 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.306 4.306 4 C -0.139 4.139 5 N -0.108 5.108 6 N -0.137 5.137 7 C -0.014 4.014 8 C 0.277 3.723 9 O -0.397 6.397 10 N -0.363 5.363 11 C 0.031 3.969 12 H 0.111 0.889 13 C -0.193 4.193 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.048 3.952 25 H 0.053 0.947 26 C -0.214 4.214 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.199 0.801 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.234 0.766 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.369 13.828 13.870 19.633 hybrid contribution -0.993 -0.386 -0.053 1.067 sum -2.363 13.442 13.817 19.421 Atomic orbital electron populations 1.20462 0.87507 1.04226 1.03016 1.21063 0.94616 0.87262 1.00387 1.21174 0.92371 0.98764 1.18282 1.23809 0.98121 0.92170 0.99781 1.77387 0.96182 1.13187 1.24064 1.47922 1.04113 1.04416 1.57226 1.21470 1.03209 0.80379 0.96309 1.20690 0.77981 0.82604 0.91054 1.90772 1.48645 1.54800 1.45517 1.46002 1.68124 1.12452 1.09713 1.22204 0.97182 0.96660 0.80841 0.88883 1.23418 0.95947 0.99215 1.00681 1.21946 0.89005 0.95401 0.90870 1.44480 1.22857 1.18367 1.46310 1.18971 1.03784 0.93366 1.19019 0.90481 1.24797 0.97509 0.99107 0.99075 1.69781 1.17984 1.37428 1.31665 0.86153 0.78293 0.83120 0.77902 1.21204 1.21558 1.21160 1.20985 0.91335 0.88903 0.94022 0.94657 1.22242 0.98723 1.00018 1.00466 0.90186 0.89491 0.91173 0.83667 0.80094 0.86204 0.85766 0.76644 0.91929 0.92030 0.87275 0.96763 0.93576 0.92621 0.94420 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.90 36.01 0.36 -0.38 16 2 C 0.09 1.08 6.93 -82.26 -0.57 0.50 16 3 C -0.28 -3.08 10.72 -40.01 -0.43 -3.51 16 4 C 0.05 0.57 12.03 -17.36 -0.21 0.37 16 5 N -0.29 -4.22 12.58 30.63 0.39 -3.83 16 6 N -0.35 -4.59 3.10 -58.31 -0.18 -4.77 16 7 C 0.11 1.15 6.54 -5.20 -0.03 1.12 16 8 C 0.49 6.99 7.90 -10.99 -0.09 6.90 16 9 O -0.52 -9.96 16.08 5.55 0.09 -9.87 16 10 N -0.71 -9.61 5.19 -51.97 -0.27 -9.88 16 11 C 0.14 2.40 2.84 -66.03 -0.19 2.21 16 12 H 0.09 1.81 7.26 -51.93 -0.38 1.43 16 13 C -0.15 -3.03 6.79 -24.52 -0.17 -3.19 16 14 C 0.15 3.70 5.88 -2.53 -0.01 3.69 16 15 N -0.59 -14.56 3.13 -162.58 -0.51 -15.07 16 16 C -0.22 -5.97 9.87 -15.06 -0.15 -6.12 16 17 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 20 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.16 3.01 3.48 -66.95 -0.23 2.78 16 25 H 0.04 0.65 7.72 -51.93 -0.40 0.25 16 26 C -0.15 -2.78 9.15 37.16 0.34 -2.44 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.58 7.72 -51.93 -0.40 0.18 16 30 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 0.76 7.66 -51.92 -0.40 0.36 16 33 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 4.13 8.37 -40.82 -0.34 3.79 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 1.03 8.02 -51.92 -0.42 0.61 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -34.68 348.55 -7.59 -42.27 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.41 Total: 3.61 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.48 Total: 1.57 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.01 Total: -59.44 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.68 -7.59 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088890933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.642 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds