Wall clock time and date at job start Tue Mar 31 2020 03:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39676 * 126.06942 * 2 1 4 4 C 1.38413 * 105.35707 * 180.12233 * 3 2 1 5 5 C 1.47163 * 126.88016 * 179.86224 * 4 3 2 6 6 O 1.21632 * 119.99382 * 174.75698 * 5 4 3 7 7 N 1.34769 * 120.00153 * 355.02469 * 5 4 3 8 8 C 1.46503 * 120.00011 * 184.73573 * 7 5 4 9 9 C 1.52997 * 109.47179 * 180.02562 * 8 7 5 10 10 C 1.53781 * 113.61429 * 274.13835 * 9 8 7 11 11 C 1.53964 * 87.02059 * 220.04642 * 10 9 8 12 12 N 1.46494 * 113.53544 * 270.80997 * 11 10 9 13 13 C 1.36936 * 120.00320 * 252.49019 * 12 11 10 14 14 H 1.08007 * 119.99368 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00466 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00153 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99705 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46930 * 90.00180 * 17 15 13 19 19 H 1.48503 * 109.47086 * 210.00143 * 17 15 13 20 20 H 1.48508 * 109.47254 * 330.00071 * 17 15 13 21 21 C 1.53783 * 113.61516 * 176.53014 * 9 8 7 22 22 N 1.36591 * 106.23093 * 359.59442 * 4 3 2 23 23 C 1.46505 * 125.19051 * 180.24354 * 22 4 3 24 24 N 1.28448 * 109.62479 * 0.26330 * 22 4 3 25 25 H 1.08992 * 109.47616 * 270.31840 * 1 2 3 26 26 H 1.09008 * 109.46762 * 30.31780 * 1 2 3 27 27 H 1.08999 * 109.47207 * 150.30824 * 1 2 3 28 28 H 1.07997 * 127.32141 * 359.97438 * 3 2 1 29 29 H 0.97002 * 120.00093 * 4.73999 * 7 5 4 30 30 H 1.09001 * 109.46994 * 300.00382 * 8 7 5 31 31 H 1.09004 * 109.46578 * 60.00652 * 8 7 5 32 32 H 1.09004 * 112.85439 * 45.33439 * 9 8 7 33 33 H 1.08996 * 113.61867 * 334.56892 * 10 9 8 34 34 H 1.09002 * 113.61823 * 105.47127 * 10 9 8 35 35 H 1.09006 * 113.73957 * 139.94415 * 11 10 9 36 36 H 0.97006 * 119.99700 * 72.50011 * 12 11 10 37 37 H 0.97002 * 120.00058 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.61292 * 254.52674 * 21 9 8 39 39 H 1.09001 * 113.61408 * 25.43494 * 21 9 8 40 40 H 1.09000 * 109.47116 * 94.60504 * 23 22 4 41 41 H 1.09005 * 109.47202 * 214.61040 * 23 22 4 42 42 H 1.09001 * 109.46842 * 334.60133 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6395 -0.0028 5 6 4.8664 1.4282 -0.0068 6 8 5.9422 0.8685 0.0872 7 7 4.8119 2.7709 -0.1092 8 6 6.0491 3.5480 -0.2177 9 6 5.7092 5.0363 -0.3198 10 6 5.4186 5.5048 -1.7554 11 6 6.2041 6.7835 -1.4113 12 7 5.3714 7.8464 -0.8430 13 6 5.0716 8.9545 -1.5896 14 1 5.4488 9.0446 -2.5977 15 6 4.2830 9.9619 -1.0510 16 7 3.9945 11.0267 -1.7688 17 14 3.6302 9.8056 0.6923 18 1 4.6045 10.4020 1.6410 19 1 2.3327 10.5199 0.8008 20 1 3.4342 8.3706 1.0207 21 6 6.9459 5.9498 -0.3532 22 7 3.5173 -0.7222 0.0049 23 6 4.6450 -1.6575 0.0102 24 7 2.2774 -1.0578 0.0064 25 1 -0.3634 0.0057 1.0275 26 1 -0.3633 0.8872 -0.5188 27 1 -0.3633 -0.8927 -0.5090 28 1 2.0206 2.1639 -0.0004 29 1 3.9536 3.2227 -0.1111 30 1 6.6648 3.3760 0.6651 31 1 6.5959 3.2380 -1.1083 32 1 4.9550 5.3488 0.4025 33 1 5.8958 4.8917 -2.5198 34 1 4.3609 5.6805 -1.9517 35 1 6.8460 7.1349 -2.2191 36 1 5.0325 7.7653 0.0623 37 1 3.4438 11.7308 -1.3922 38 1 7.1193 6.4842 0.5808 39 1 7.8414 5.4585 -0.7336 40 1 4.8720 -1.9471 1.0363 41 1 4.3847 -2.5438 -0.5684 42 1 5.5173 -1.1773 -0.4333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090943762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:05 Heat of formation + Delta-G solvation = 72.129459 kcal Electronic energy + Delta-G solvation = -22699.311849 eV Core-core repulsion = 19296.150497 eV Total energy + Delta-G solvation = -3403.161352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.79189 -39.77910 -38.62143 -35.11314 -34.16393 -33.31932 -31.48235 -30.58028 -29.93607 -27.68239 -25.78540 -25.24209 -23.94828 -22.99591 -21.87272 -21.12702 -19.87688 -18.65702 -17.89453 -17.64620 -16.63762 -16.44944 -15.87963 -15.33534 -14.98963 -14.49112 -14.42864 -14.15040 -13.76250 -13.61460 -13.56129 -13.46583 -12.86930 -12.72490 -12.61442 -12.52910 -12.49920 -12.11431 -11.66317 -11.42484 -10.95931 -10.94543 -10.57469 -10.45242 -10.23930 -10.04000 -9.72814 -9.60485 -9.46730 -9.15558 -9.09633 -8.95883 -7.35262 -5.83875 -3.20459 1.00596 2.11097 2.28154 2.96890 3.02311 3.30804 3.34120 3.40229 4.17491 4.30729 4.51940 4.71456 4.84678 4.85524 4.87438 4.94364 5.00625 5.11196 5.24929 5.32027 5.34068 5.35861 5.38712 5.42108 5.57351 5.68203 5.71594 5.77458 5.83047 6.06073 6.14598 6.18516 6.25122 6.41959 6.47189 6.56617 6.66276 6.83389 7.21555 7.78455 7.90463 7.93732 8.35719 9.13290 9.85431 10.04378 11.34202 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.003170 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.366269 B = 8829.921019 C = 9848.107971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.023 3.977 3 C -0.186 4.186 4 C -0.036 4.036 5 C 0.590 3.410 6 O -0.546 6.546 7 N -0.707 5.707 8 C 0.133 3.867 9 C -0.125 4.125 10 C -0.167 4.167 11 C 0.173 3.827 12 N -0.730 5.730 13 C -0.248 4.248 14 H 0.092 0.908 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.148 4.148 22 N -0.258 5.258 23 C 0.085 3.915 24 N -0.279 5.279 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.406 0.594 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -23.642 4.445 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 C -0.215 4.215 4 C -0.164 4.164 5 C 0.375 3.625 6 O -0.424 6.424 7 N -0.357 5.357 8 C 0.010 3.990 9 C -0.143 4.143 10 C -0.208 4.208 11 C 0.061 3.939 12 N -0.370 5.370 13 C -0.378 4.378 14 H 0.110 0.890 15 C -0.190 4.190 16 N -0.579 5.579 17 Si 0.714 3.286 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.187 4.187 22 N -0.045 5.045 23 C -0.055 4.055 24 N -0.113 5.113 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.179 0.821 29 H 0.241 0.759 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.639 -25.071 4.313 25.447 hybrid contribution -0.949 0.984 1.309 1.893 sum -1.589 -24.087 5.622 24.785 Atomic orbital electron populations 1.20102 0.86282 1.03343 1.02842 1.22030 0.97202 0.88731 1.05360 1.22175 0.90284 1.00478 1.08553 1.21419 0.95762 0.85390 1.13845 1.16908 0.86472 0.82373 0.76764 1.90768 1.29967 1.70874 1.50837 1.45751 1.11285 1.05326 1.73368 1.21560 0.85208 0.90174 1.02065 1.22775 1.00106 0.91634 0.99821 1.23902 1.02387 1.00416 0.94127 1.21037 0.91510 0.86912 0.94435 1.42519 1.59873 1.19739 1.14862 1.19110 1.26415 0.94130 0.98114 0.89017 1.24683 1.00091 0.96471 0.97752 1.69695 1.42277 1.09335 1.36558 0.86563 0.78718 0.77240 0.86029 1.21008 1.21637 1.20389 1.23461 0.96253 0.97725 1.01307 1.45530 1.05121 1.04310 1.49569 1.22373 0.85933 0.92607 1.04624 1.73134 0.89464 1.27911 1.20828 0.90793 0.90316 0.91002 0.82052 0.75885 0.91329 0.91059 0.89074 0.90908 0.91220 0.90993 0.80514 0.92943 0.91333 0.89927 0.89779 0.89032 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.00 0.38 -0.12 16 2 C 0.02 0.25 7.22 -82.47 -0.60 -0.35 16 3 C -0.19 -1.95 10.44 -38.98 -0.41 -2.36 16 4 C -0.04 -0.42 6.96 -82.06 -0.57 -1.00 16 5 C 0.59 7.43 7.79 -12.64 -0.10 7.33 16 6 O -0.55 -8.02 14.66 5.25 0.08 -7.94 16 7 N -0.71 -7.86 5.54 -61.47 -0.34 -8.20 16 8 C 0.13 1.54 5.50 -4.04 -0.02 1.52 16 9 C -0.12 -1.61 3.62 -89.81 -0.33 -1.94 16 10 C -0.17 -2.49 7.44 -25.82 -0.19 -2.68 16 11 C 0.17 3.07 4.57 -67.02 -0.31 2.76 16 12 N -0.73 -16.34 5.11 -52.54 -0.27 -16.60 16 13 C -0.25 -6.76 10.45 -15.06 -0.16 -6.91 16 14 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 15 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 17 Si 0.88 21.36 27.73 -169.99 -4.71 16.65 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 21 C -0.15 -2.07 7.39 -25.92 -0.19 -2.26 16 22 N -0.26 -3.04 3.75 -63.87 -0.24 -3.28 16 23 C 0.08 0.74 10.91 59.85 0.65 1.39 16 24 N -0.28 -3.40 11.90 33.64 0.40 -3.00 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.16 1.29 7.58 -52.49 -0.40 0.89 16 29 H 0.41 3.89 7.50 -40.82 -0.31 3.58 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 36 H 0.36 7.92 5.76 -40.82 -0.24 7.69 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 1.06 6.16 -51.93 -0.32 0.74 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -33.26 350.29 -7.28 -40.54 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.32 Total: 8.95 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.93 Total: -4.54 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.33 Total: -58.94 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.08 Total: -7.94 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.26 -7.28 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090943762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.673 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds