Wall clock time and date at job start Tue Mar 31 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39676 * 126.06942 * 2 1 4 4 C 1.38413 * 105.35707 * 180.12233 * 3 2 1 5 5 C 1.47163 * 126.88016 * 179.86224 * 4 3 2 6 6 O 1.21632 * 119.99382 * 174.75698 * 5 4 3 7 7 N 1.34769 * 120.00153 * 355.02469 * 5 4 3 8 8 C 1.46503 * 120.00011 * 184.73573 * 7 5 4 9 9 C 1.52997 * 109.47179 * 180.02562 * 8 7 5 10 10 C 1.53781 * 113.61429 * 274.13835 * 9 8 7 11 11 C 1.53964 * 87.02059 * 220.04642 * 10 9 8 12 12 N 1.46494 * 113.53544 * 270.80997 * 11 10 9 13 13 C 1.36936 * 120.00320 * 252.49019 * 12 11 10 14 14 H 1.08007 * 119.99368 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00466 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00153 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99705 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46930 * 90.00180 * 17 15 13 19 19 H 1.48503 * 109.47086 * 210.00143 * 17 15 13 20 20 H 1.48508 * 109.47254 * 330.00071 * 17 15 13 21 21 C 1.53783 * 113.61516 * 176.53014 * 9 8 7 22 22 N 1.36591 * 106.23093 * 359.59442 * 4 3 2 23 23 C 1.46505 * 125.19051 * 180.24354 * 22 4 3 24 24 N 1.28448 * 109.62479 * 0.26330 * 22 4 3 25 25 H 1.08992 * 109.47616 * 270.31840 * 1 2 3 26 26 H 1.09008 * 109.46762 * 30.31780 * 1 2 3 27 27 H 1.08999 * 109.47207 * 150.30824 * 1 2 3 28 28 H 1.07997 * 127.32141 * 359.97438 * 3 2 1 29 29 H 0.97002 * 120.00093 * 4.73999 * 7 5 4 30 30 H 1.09001 * 109.46994 * 300.00382 * 8 7 5 31 31 H 1.09004 * 109.46578 * 60.00652 * 8 7 5 32 32 H 1.09004 * 112.85439 * 45.33439 * 9 8 7 33 33 H 1.08996 * 113.61867 * 334.56892 * 10 9 8 34 34 H 1.09002 * 113.61823 * 105.47127 * 10 9 8 35 35 H 1.09006 * 113.73957 * 139.94415 * 11 10 9 36 36 H 0.97006 * 119.99700 * 72.50011 * 12 11 10 37 37 H 0.97002 * 120.00058 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.61292 * 254.52674 * 21 9 8 39 39 H 1.09001 * 113.61408 * 25.43494 * 21 9 8 40 40 H 1.09000 * 109.47116 * 94.60504 * 23 22 4 41 41 H 1.09005 * 109.47202 * 214.61040 * 23 22 4 42 42 H 1.09001 * 109.46842 * 334.60133 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6395 -0.0028 5 6 4.8664 1.4282 -0.0068 6 8 5.9422 0.8685 0.0872 7 7 4.8119 2.7709 -0.1092 8 6 6.0491 3.5480 -0.2177 9 6 5.7092 5.0363 -0.3198 10 6 5.4186 5.5048 -1.7554 11 6 6.2041 6.7835 -1.4113 12 7 5.3714 7.8464 -0.8430 13 6 5.0716 8.9545 -1.5896 14 1 5.4488 9.0446 -2.5977 15 6 4.2830 9.9619 -1.0510 16 7 3.9945 11.0267 -1.7688 17 14 3.6302 9.8056 0.6923 18 1 4.6045 10.4020 1.6410 19 1 2.3327 10.5199 0.8008 20 1 3.4342 8.3706 1.0207 21 6 6.9459 5.9498 -0.3532 22 7 3.5173 -0.7222 0.0049 23 6 4.6450 -1.6575 0.0102 24 7 2.2774 -1.0578 0.0064 25 1 -0.3634 0.0057 1.0275 26 1 -0.3633 0.8872 -0.5188 27 1 -0.3633 -0.8927 -0.5090 28 1 2.0206 2.1639 -0.0004 29 1 3.9536 3.2227 -0.1111 30 1 6.6648 3.3760 0.6651 31 1 6.5959 3.2380 -1.1083 32 1 4.9550 5.3488 0.4025 33 1 5.8958 4.8917 -2.5198 34 1 4.3609 5.6805 -1.9517 35 1 6.8460 7.1349 -2.2191 36 1 5.0325 7.7653 0.0623 37 1 3.4438 11.7308 -1.3922 38 1 7.1193 6.4842 0.5808 39 1 7.8414 5.4585 -0.7336 40 1 4.8720 -1.9471 1.0363 41 1 4.3847 -2.5438 -0.5684 42 1 5.5173 -1.1773 -0.4333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090943762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:04 Heat of formation + Delta-G solvation = 48.740812 kcal Electronic energy + Delta-G solvation = -22700.326057 eV Core-core repulsion = 19296.150497 eV Total energy + Delta-G solvation = -3404.175560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.59472 -40.81210 -39.81960 -36.23544 -35.22660 -34.77077 -32.81730 -32.04833 -30.57292 -28.83678 -26.48649 -26.43198 -25.54879 -24.22480 -23.06976 -21.97884 -20.85845 -19.98440 -19.54465 -18.73159 -17.45800 -17.35664 -16.92582 -16.49868 -16.32119 -15.96156 -15.57085 -15.12923 -14.93404 -14.69299 -14.54889 -14.36066 -14.14916 -14.09115 -13.36425 -13.31063 -13.24695 -13.15530 -13.07849 -13.00228 -12.68685 -12.17026 -11.86863 -11.73715 -11.64916 -11.57099 -11.20610 -10.95767 -10.82101 -10.38705 -10.02483 -9.86369 -9.27753 -8.01149 -5.34823 0.14598 1.34183 1.38992 1.43490 1.49639 1.50592 2.07491 2.16097 2.49892 3.29289 3.43926 3.48364 3.53765 3.75382 3.83496 3.99248 4.03843 4.25523 4.29268 4.29945 4.38609 4.38704 4.59041 4.62082 4.70651 4.76615 4.88004 4.95733 4.99096 4.99993 5.09647 5.12079 5.22043 5.34030 5.44643 5.53234 5.56637 5.72131 5.82551 6.24305 6.33726 6.94605 7.03695 7.09787 7.86726 8.05124 9.20450 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.003170 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.366269 B = 8829.921019 C = 9848.107971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.012 3.988 3 C -0.183 4.183 4 C -0.055 4.055 5 C 0.591 3.409 6 O -0.571 6.571 7 N -0.699 5.699 8 C 0.141 3.859 9 C -0.106 4.106 10 C -0.156 4.156 11 C 0.144 3.856 12 N -0.734 5.734 13 C -0.232 4.232 14 H 0.056 0.944 15 C -0.066 4.066 16 N -0.986 5.986 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.298 1.298 20 H -0.246 1.246 21 C -0.132 4.132 22 N -0.268 5.268 23 C 0.081 3.919 24 N -0.300 5.300 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.185 0.815 29 H 0.414 0.586 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -25.525 6.048 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C -0.212 4.212 4 C -0.183 4.183 5 C 0.377 3.623 6 O -0.452 6.452 7 N -0.350 5.350 8 C 0.018 3.982 9 C -0.124 4.124 10 C -0.196 4.196 11 C 0.035 3.965 12 N -0.376 5.376 13 C -0.363 4.363 14 H 0.074 0.926 15 C -0.257 4.257 16 N -0.636 5.636 17 Si 0.783 3.217 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.170 1.170 21 C -0.171 4.171 22 N -0.055 5.055 23 C -0.058 4.058 24 N -0.134 5.134 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.202 0.798 29 H 0.251 0.749 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.012 -27.020 5.917 27.678 hybrid contribution -0.758 1.529 0.687 1.840 sum -1.770 -25.490 6.604 26.391 Atomic orbital electron populations 1.20223 0.84158 1.04260 1.03798 1.22631 0.98654 0.88484 1.04565 1.22533 0.89632 1.01610 1.07431 1.21510 0.96025 0.85747 1.15044 1.16991 0.86345 0.82646 0.76343 1.90755 1.30857 1.71395 1.52155 1.45663 1.11639 1.04912 1.72758 1.21433 0.85372 0.89001 1.02418 1.22588 0.99353 0.92385 0.98118 1.23753 1.00997 0.98647 0.96218 1.21393 0.92240 0.87069 0.95839 1.42437 1.60798 1.19560 1.14760 1.19064 1.24784 0.95450 0.96992 0.92625 1.25530 1.01293 0.96270 1.02620 1.69888 1.44060 1.10660 1.38987 0.85402 0.77337 0.78812 0.80162 1.20661 1.22446 1.17036 1.23359 0.97310 0.96697 0.99755 1.45807 1.05473 1.04662 1.49587 1.22500 0.85085 0.92748 1.05484 1.73124 0.89869 1.28834 1.21612 0.89743 0.88720 0.90777 0.79754 0.74869 0.90915 0.90827 0.89059 0.89026 0.92775 0.92496 0.79922 0.93362 0.91336 0.87366 0.88878 0.87328 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.45 71.23 0.74 -0.08 16 2 C 0.01 0.25 7.22 43.05 0.31 0.56 16 3 C -0.18 -3.44 10.44 22.66 0.24 -3.21 16 4 C -0.05 -1.22 6.96 40.79 0.28 -0.94 16 5 C 0.59 13.79 7.79 86.59 0.67 14.46 16 6 O -0.57 -15.96 14.66 -4.13 -0.06 -16.02 16 7 N -0.70 -13.64 5.54 -466.63 -2.59 -16.22 16 8 C 0.14 2.81 5.50 86.38 0.48 3.28 16 9 C -0.11 -2.39 3.62 -10.27 -0.04 -2.43 16 10 C -0.16 -4.28 7.44 31.18 0.23 -4.05 16 11 C 0.14 4.92 4.57 45.58 0.21 5.13 16 12 N -0.73 -32.08 5.11 -320.15 -1.64 -33.72 16 13 C -0.23 -12.82 10.45 84.03 0.88 -11.95 16 14 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 15 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 16 N -0.99 -62.37 13.97 21.65 0.30 -62.07 16 17 Si 0.96 43.82 27.73 68.60 1.90 45.72 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.25 -9.86 6.52 99.48 0.65 -9.21 16 21 C -0.13 -3.29 7.39 31.12 0.23 -3.06 16 22 N -0.27 -6.00 3.75 -356.00 -1.33 -7.34 16 23 C 0.08 1.34 10.91 127.77 1.39 2.74 16 24 N -0.30 -6.92 11.90 -47.49 -0.57 -7.49 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.19 2.38 7.58 -2.91 -0.02 2.35 16 29 H 0.41 6.66 7.50 -92.71 -0.70 5.97 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.49 7.88 -2.38 -0.02 1.47 16 32 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.09 2.19 7.92 -2.39 -0.02 2.17 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 2.09 8.10 -2.38 -0.02 2.07 16 36 H 0.37 15.19 5.76 -92.70 -0.53 14.66 16 37 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.10 1.91 6.16 -2.39 -0.01 1.90 16 Total: -1.00 -73.19 350.29 1.87 -71.32 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.25 Total: 28.67 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 6.10 Total: -2.85 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -5.82 Total: -126.84 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.06 Total: -16.02 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.72 kcal Total: -73.19 1.87 -71.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090943762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.066 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds