Wall clock time and date at job start Tue Mar 31 2020 04:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35566 * 125.82477 * 2 1 4 4 N 1.35408 * 107.16049 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.43619 * 179.97438 * 4 3 2 6 6 C 1.36671 * 107.11858 * 359.97438 * 4 3 2 7 7 C 1.47409 * 125.86148 * 180.02562 * 6 4 3 8 8 O 1.21608 * 120.00030 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00128 * 179.97438 * 7 6 4 10 10 C 1.46494 * 119.99924 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47093 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.77580 * 51.76189 * 11 10 9 13 13 C 1.54325 * 110.72022 * 288.52410 * 11 10 9 14 14 N 1.47290 * 107.30599 * 219.45263 * 13 11 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 11 16 16 H 1.07995 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99650 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46993 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47464 * 119.99742 * 19 17 15 22 22 H 1.48496 * 109.47378 * 240.00268 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 11 24 24 C 1.54908 * 104.92961 * 24.15407 * 23 14 13 25 25 H 1.09008 * 111.00422 * 81.04917 * 24 23 14 26 26 C 1.52999 * 111.00368 * 204.85960 * 24 23 14 27 27 N 1.31612 * 108.27561 * 0.26383 * 6 4 3 28 28 H 1.09002 * 109.46495 * 90.00402 * 1 2 3 29 29 H 1.08994 * 109.47115 * 210.00113 * 1 2 3 30 30 H 1.08995 * 109.46878 * 330.00795 * 1 2 3 31 31 H 1.08000 * 126.42037 * 359.97438 * 3 2 1 32 32 H 0.96994 * 119.99369 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.47310 * 60.00424 * 10 9 7 34 34 H 1.09004 * 109.47167 * 299.99783 * 10 9 7 35 35 H 1.09004 * 109.88239 * 338.86059 * 13 11 10 36 36 H 1.08999 * 109.88411 * 100.02489 * 13 11 10 37 37 H 0.97001 * 119.99611 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 39 39 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 40 40 H 1.09001 * 109.47276 * 58.55057 * 26 24 23 41 41 H 1.09003 * 109.46690 * 178.54597 * 26 24 23 42 42 H 1.08998 * 109.47248 * 298.54758 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5834 0.6658 0.0006 5 1 4.3789 1.2208 0.0004 6 6 3.5465 -0.7004 0.0015 7 6 4.7174 -1.5958 0.0029 8 8 5.8402 -1.1287 0.0029 9 7 4.5437 -2.9324 0.0043 10 6 5.7074 -3.8222 0.0051 11 6 5.2363 -5.2779 0.0059 12 1 4.5173 -5.4521 -0.7946 13 6 4.6315 -5.6553 1.3747 14 7 5.0693 -7.0272 1.6838 15 6 4.7657 -7.7278 2.8206 16 1 4.1533 -7.2752 3.5864 17 6 5.2450 -9.0196 2.9885 18 7 5.9917 -9.5710 2.0554 19 14 4.8302 -9.9756 4.5388 20 1 3.9831 -9.1377 5.4253 21 1 4.0943 -11.2132 4.1754 22 1 6.0838 -10.3355 5.2488 23 6 5.8905 -7.5214 0.5636 24 6 6.4426 -6.2455 -0.1197 25 1 7.3106 -5.8602 0.4154 26 6 6.7812 -6.5123 -1.5877 27 7 2.2861 -1.0792 -0.0043 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9711 2.1277 -0.0004 32 1 3.6481 -3.3049 0.0047 33 1 6.3082 -3.6340 0.8949 34 1 6.3081 -3.6357 -0.8852 35 1 4.9928 -4.9697 2.1413 36 1 3.5435 -5.6165 1.3226 37 1 6.3263 -10.4739 2.1726 38 1 5.2765 -8.0902 -0.1347 39 1 6.7093 -8.1368 0.9361 40 1 5.8880 -6.8551 -2.1101 41 1 7.1423 -5.5936 -2.0500 42 1 7.5543 -7.2782 -1.6489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093039911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:37 Heat of formation + Delta-G solvation = 35.978988 kcal Electronic energy + Delta-G solvation = -23057.665016 eV Core-core repulsion = 19652.936062 eV Total energy + Delta-G solvation = -3404.728954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48365 -39.48352 -37.91655 -34.81876 -33.47006 -32.94983 -31.55018 -30.71173 -29.32168 -27.34085 -25.98629 -25.17282 -23.70541 -22.44308 -20.75451 -20.51898 -19.82719 -19.49797 -18.56023 -16.85687 -16.50564 -16.05010 -15.88253 -15.16947 -14.71531 -14.35809 -14.22069 -13.86092 -13.68444 -13.28350 -13.18946 -12.98707 -12.67490 -12.61828 -12.47863 -11.90040 -11.53109 -11.43595 -11.12498 -10.85371 -10.79200 -10.53177 -10.45377 -10.36273 -10.12943 -9.96694 -9.87748 -9.74576 -9.38114 -9.09756 -8.64050 -8.62588 -6.79946 -5.62508 -3.03918 1.16801 2.33056 2.42064 3.27528 3.39452 3.41882 3.47464 3.49915 4.08409 4.50945 4.66742 4.81039 4.93076 5.11348 5.25215 5.32403 5.45978 5.47029 5.52423 5.59211 5.67522 5.72513 5.77509 5.87628 6.07278 6.10704 6.22044 6.28742 6.32739 6.39901 6.54775 6.62340 6.67590 6.81362 6.86637 6.97915 7.33809 7.56715 7.66280 7.66933 7.89073 8.06830 8.39177 9.25228 9.85763 10.51149 11.41290 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.003352 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.921499 B = 8349.990374 C = 9292.153731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.001 4.001 3 C -0.028 4.028 4 N -0.525 5.525 5 H 0.430 0.570 6 C 0.152 3.848 7 C 0.603 3.397 8 O -0.547 6.547 9 N -0.695 5.695 10 C 0.133 3.867 11 C -0.110 4.110 12 H 0.079 0.921 13 C 0.140 3.860 14 N -0.605 5.605 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.159 3.841 24 C -0.110 4.110 25 H 0.072 0.928 26 C -0.135 4.135 27 N -0.439 5.439 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.185 0.815 32 H 0.414 0.586 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.251 0.749 38 H 0.013 0.987 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 20.020 -7.507 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 C -0.167 4.167 4 N -0.127 5.127 5 H 0.269 0.731 6 C -0.110 4.110 7 C 0.386 3.614 8 O -0.425 6.425 9 N -0.346 5.346 10 C 0.010 3.990 11 C -0.129 4.129 12 H 0.098 0.902 13 C 0.014 3.986 14 N -0.331 5.331 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.034 3.966 24 C -0.131 4.131 25 H 0.090 0.910 26 C -0.192 4.192 27 N -0.162 5.162 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.202 0.798 32 H 0.250 0.750 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.519 19.255 -7.395 21.352 hybrid contribution -0.108 0.541 0.776 0.952 sum -5.627 19.796 -6.619 21.618 Atomic orbital electron populations 1.20070 0.87004 1.03077 1.02490 1.20935 0.97071 0.87945 1.07555 1.22718 0.83034 1.01011 1.09921 1.42892 1.09156 1.07585 1.53034 0.73072 1.22716 0.93853 0.82320 1.12061 1.16466 0.85387 0.82248 0.77299 1.90836 1.23729 1.76172 1.51733 1.45775 1.11902 1.04523 1.72356 1.21588 0.86892 0.88101 1.02441 1.22513 0.99169 0.92013 0.99251 0.90241 1.21406 0.96217 0.88416 0.92597 1.44553 1.58954 1.10696 1.18897 1.19132 1.26031 0.95338 0.94323 0.90470 1.24781 1.00428 0.97101 0.98469 1.69805 1.39426 1.14760 1.33119 0.86001 0.77468 0.79816 0.82247 1.20552 1.21779 1.21784 1.21979 0.96065 0.90990 0.87575 1.22602 0.96227 0.98257 0.95970 0.90993 1.21655 1.01283 1.00512 0.95786 1.70139 0.99174 1.30956 1.15969 0.91183 0.90727 0.91147 0.79752 0.74980 0.90817 0.91165 0.95764 0.96066 0.93827 0.96907 0.87581 0.92981 0.93691 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.01 0.38 -0.12 16 2 C 0.00 -0.01 7.07 -82.99 -0.59 -0.60 16 3 C -0.03 -0.22 11.91 -16.93 -0.20 -0.43 16 4 N -0.53 -5.05 6.15 -10.78 -0.07 -5.12 16 5 H 0.43 3.17 8.96 -40.82 -0.37 2.80 16 6 C 0.15 1.97 7.95 -154.52 -1.23 0.75 16 7 C 0.60 8.86 7.81 -12.53 -0.10 8.76 16 8 O -0.55 -9.17 17.09 5.27 0.09 -9.08 16 9 N -0.70 -9.88 5.47 -61.39 -0.34 -10.21 16 10 C 0.13 1.99 5.02 -4.04 -0.02 1.97 16 11 C -0.11 -1.86 2.43 -88.78 -0.22 -2.08 16 12 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 13 C 0.14 2.90 6.77 -2.92 -0.02 2.88 16 14 N -0.61 -15.57 3.40 -169.86 -0.58 -16.15 16 15 C -0.22 -6.19 10.28 -15.06 -0.15 -6.35 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C 0.16 3.81 5.35 -2.53 -0.01 3.80 16 24 C -0.11 -2.03 3.09 -88.47 -0.27 -2.30 16 25 H 0.07 1.34 8.05 -51.92 -0.42 0.92 16 26 C -0.13 -2.07 9.29 37.16 0.35 -1.72 16 27 N -0.44 -5.78 10.89 -7.49 -0.08 -5.86 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.41 5.63 8.15 -40.82 -0.33 5.30 16 33 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.51 7.68 -51.93 -0.40 0.12 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.01 0.33 8.04 -51.93 -0.42 -0.09 16 39 H 0.11 2.89 5.86 -51.93 -0.30 2.58 16 40 H 0.05 0.79 8.11 -51.93 -0.42 0.36 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -33.34 348.85 -8.78 -42.12 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.41 Total: 4.07 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.19 Total: 4.11 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.50 Total: -63.72 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.34 -8.78 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093039911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.101 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds