Wall clock time and date at job start Tue Mar 31 2020 04:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35566 * 125.82477 * 2 1 4 4 N 1.35408 * 107.16049 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.43619 * 179.97438 * 4 3 2 6 6 C 1.36671 * 107.11858 * 359.97438 * 4 3 2 7 7 C 1.47409 * 125.86148 * 180.02562 * 6 4 3 8 8 O 1.21608 * 120.00030 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00128 * 179.97438 * 7 6 4 10 10 C 1.46494 * 119.99924 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47093 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.77580 * 51.76189 * 11 10 9 13 13 C 1.54325 * 110.72022 * 288.52410 * 11 10 9 14 14 N 1.47290 * 107.30599 * 219.45263 * 13 11 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 11 16 16 H 1.07995 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99650 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46993 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47464 * 119.99742 * 19 17 15 22 22 H 1.48496 * 109.47378 * 240.00268 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 11 24 24 C 1.54908 * 104.92961 * 24.15407 * 23 14 13 25 25 H 1.09008 * 111.00422 * 81.04917 * 24 23 14 26 26 C 1.52999 * 111.00368 * 204.85960 * 24 23 14 27 27 N 1.31612 * 108.27561 * 0.26383 * 6 4 3 28 28 H 1.09002 * 109.46495 * 90.00402 * 1 2 3 29 29 H 1.08994 * 109.47115 * 210.00113 * 1 2 3 30 30 H 1.08995 * 109.46878 * 330.00795 * 1 2 3 31 31 H 1.08000 * 126.42037 * 359.97438 * 3 2 1 32 32 H 0.96994 * 119.99369 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.47310 * 60.00424 * 10 9 7 34 34 H 1.09004 * 109.47167 * 299.99783 * 10 9 7 35 35 H 1.09004 * 109.88239 * 338.86059 * 13 11 10 36 36 H 1.08999 * 109.88411 * 100.02489 * 13 11 10 37 37 H 0.97001 * 119.99611 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 39 39 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 40 40 H 1.09001 * 109.47276 * 58.55057 * 26 24 23 41 41 H 1.09003 * 109.46690 * 178.54597 * 26 24 23 42 42 H 1.08998 * 109.47248 * 298.54758 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5834 0.6658 0.0006 5 1 4.3789 1.2208 0.0004 6 6 3.5465 -0.7004 0.0015 7 6 4.7174 -1.5958 0.0029 8 8 5.8402 -1.1287 0.0029 9 7 4.5437 -2.9324 0.0043 10 6 5.7074 -3.8222 0.0051 11 6 5.2363 -5.2779 0.0059 12 1 4.5173 -5.4521 -0.7946 13 6 4.6315 -5.6553 1.3747 14 7 5.0693 -7.0272 1.6838 15 6 4.7657 -7.7278 2.8206 16 1 4.1533 -7.2752 3.5864 17 6 5.2450 -9.0196 2.9885 18 7 5.9917 -9.5710 2.0554 19 14 4.8302 -9.9756 4.5388 20 1 3.9831 -9.1377 5.4253 21 1 4.0943 -11.2132 4.1754 22 1 6.0838 -10.3355 5.2488 23 6 5.8905 -7.5214 0.5636 24 6 6.4426 -6.2455 -0.1197 25 1 7.3106 -5.8602 0.4154 26 6 6.7812 -6.5123 -1.5877 27 7 2.2861 -1.0792 -0.0043 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9711 2.1277 -0.0004 32 1 3.6481 -3.3049 0.0047 33 1 6.3082 -3.6340 0.8949 34 1 6.3081 -3.6357 -0.8852 35 1 4.9928 -4.9697 2.1413 36 1 3.5435 -5.6165 1.3226 37 1 6.3263 -10.4739 2.1726 38 1 5.2765 -8.0902 -0.1347 39 1 6.7093 -8.1368 0.9361 40 1 5.8880 -6.8551 -2.1101 41 1 7.1423 -5.5936 -2.0500 42 1 7.5543 -7.2782 -1.6489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093039911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:36 Heat of formation + Delta-G solvation = 12.657550 kcal Electronic energy + Delta-G solvation = -23058.676310 eV Core-core repulsion = 19652.936062 eV Total energy + Delta-G solvation = -3405.740248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.27325 -40.68578 -39.48096 -36.19935 -34.77734 -34.16852 -32.55106 -32.40249 -30.71686 -28.27450 -27.70627 -26.62041 -25.00311 -23.82081 -21.87868 -21.55099 -21.20398 -20.86246 -19.61928 -18.81176 -17.56322 -17.28829 -16.90425 -16.73985 -16.15060 -15.65545 -15.50243 -15.06838 -14.94169 -14.68584 -14.31283 -14.03054 -13.98146 -13.57531 -13.53385 -13.39518 -13.03405 -13.02911 -12.76602 -12.68544 -12.47280 -11.94012 -11.87002 -11.67581 -11.53357 -11.40512 -11.30005 -11.18237 -11.07937 -10.74592 -10.26356 -9.39032 -8.87535 -7.76769 -5.21207 0.28693 1.46380 1.47252 1.52394 1.55148 1.57708 2.29631 2.49070 2.51836 3.18453 3.31999 3.61238 3.76902 3.87657 3.94163 3.99191 4.12298 4.36985 4.39710 4.49700 4.61809 4.74113 4.76458 4.84828 4.86644 4.97352 4.97784 5.00396 5.10159 5.12961 5.14496 5.29293 5.39190 5.39895 5.50595 5.66674 5.73704 5.85018 6.16438 6.29978 6.33004 6.78788 7.00261 7.12038 7.78860 8.43125 9.24762 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.003352 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.921499 B = 8349.990374 C = 9292.153731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.031 4.031 3 C 0.005 3.995 4 N -0.516 5.516 5 H 0.440 0.560 6 C 0.113 3.887 7 C 0.604 3.396 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.145 3.855 11 C -0.090 4.090 12 H 0.094 0.906 13 C 0.137 3.863 14 N -0.629 5.629 15 C -0.239 4.239 16 H 0.077 0.923 17 C -0.067 4.067 18 N -0.947 5.947 19 Si 0.980 3.020 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.162 3.838 24 C -0.098 4.098 25 H 0.070 0.930 26 C -0.128 4.128 27 N -0.462 5.462 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.234 0.766 32 H 0.417 0.583 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.020 0.980 36 H 0.023 0.977 37 H 0.247 0.753 38 H -0.010 1.010 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 22.592 -8.040 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.165 4.165 3 C -0.135 4.135 4 N -0.118 5.118 5 H 0.281 0.719 6 C -0.146 4.146 7 C 0.389 3.611 8 O -0.454 6.454 9 N -0.344 5.344 10 C 0.022 3.978 11 C -0.109 4.109 12 H 0.112 0.888 13 C 0.012 3.988 14 N -0.355 5.355 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.259 4.259 18 N -0.597 5.597 19 Si 0.808 3.192 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.037 3.963 24 C -0.119 4.119 25 H 0.088 0.912 26 C -0.185 4.185 27 N -0.186 5.186 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.250 0.750 32 H 0.253 0.747 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.008 0.992 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.558 21.847 -7.936 24.151 hybrid contribution 0.117 -0.164 0.957 0.978 sum -6.441 21.682 -6.979 23.671 Atomic orbital electron populations 1.20147 0.85200 1.03752 1.03216 1.21578 0.98492 0.88009 1.08466 1.23509 0.81713 1.02535 1.05748 1.42964 1.10340 1.06609 1.51924 0.71895 1.22280 0.93221 0.83443 1.15676 1.16658 0.85705 0.82301 0.76427 1.90807 1.24869 1.76572 1.53140 1.45684 1.11660 1.04603 1.72472 1.21357 0.87096 0.86775 1.02597 1.22340 0.98400 0.92941 0.97238 0.88805 1.21552 0.96461 0.86093 0.94736 1.44878 1.59506 1.12376 1.18708 1.19476 1.25985 0.96002 0.95365 0.90473 1.25619 1.00679 0.98103 1.01529 1.70062 1.40249 1.14667 1.34714 0.84986 0.77145 0.78221 0.78832 1.19323 1.21771 1.21745 1.21770 0.94379 0.93135 0.87044 1.22437 0.96348 0.95503 0.97581 0.91189 1.21610 1.01528 1.02043 0.93340 1.70068 0.99660 1.32802 1.16116 0.90396 0.92151 0.88394 0.74979 0.74674 0.92070 0.89614 0.96160 0.95850 0.94328 0.99244 0.91172 0.92679 0.90649 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.42 71.24 0.74 -0.05 16 2 C -0.03 -0.57 7.07 41.75 0.30 -0.28 16 3 C 0.01 0.06 11.91 83.52 0.99 1.06 16 4 N -0.52 -8.77 6.15 -188.01 -1.16 -9.92 16 5 H 0.44 5.52 8.96 -92.71 -0.83 4.69 16 6 C 0.11 2.83 7.95 136.28 1.08 3.91 16 7 C 0.60 17.42 7.81 86.66 0.68 18.10 16 8 O -0.57 -18.94 17.09 -4.06 -0.07 -19.01 16 9 N -0.69 -19.27 5.47 -466.39 -2.55 -21.82 16 10 C 0.15 4.20 5.02 86.38 0.43 4.63 16 11 C -0.09 -2.97 2.43 -9.60 -0.02 -3.00 16 12 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16 13 C 0.14 5.73 6.77 86.68 0.59 6.32 16 14 N -0.63 -33.21 3.40 -691.31 -2.35 -35.56 16 15 C -0.24 -13.80 10.28 84.03 0.86 -12.94 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 18 N -0.95 -57.16 10.09 21.65 0.22 -56.94 16 19 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 C 0.16 8.02 5.35 86.85 0.47 8.48 16 24 C -0.10 -3.60 3.09 -9.40 -0.03 -3.63 16 25 H 0.07 2.59 8.05 -2.38 -0.02 2.57 16 26 C -0.13 -3.71 9.29 71.98 0.67 -3.04 16 27 N -0.46 -11.70 10.89 -177.63 -1.94 -13.63 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.23 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.42 11.15 8.15 -92.71 -0.76 10.39 16 33 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 34 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.02 0.87 7.68 -2.38 -0.02 0.85 16 36 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 38 H -0.01 -0.55 8.04 -2.39 -0.02 -0.57 16 39 H 0.07 4.00 5.86 -2.39 -0.01 3.99 16 40 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -74.96 348.85 0.86 -74.10 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.55 Total: 18.01 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 7.22 Total: 16.17 kcal Atomic # 7 Polarization: -130.11 SS G_CDS: -7.77 Total: -137.88 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.07 Total: -19.01 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -74.96 0.86 -74.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093039911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.759 kcal (2) G-P(sol) polarization free energy of solvation -74.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds