Wall clock time and date at job start Tue Mar 31 2020 04:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35358 * 126.38398 * 2 1 4 4 C 1.41511 * 105.50131 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51367 * 180.02562 * 4 3 2 6 6 O 1.21561 * 120.00392 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99256 * 180.02562 * 5 4 3 8 8 C 1.48116 * 127.03016 * 179.71041 * 7 5 4 9 9 C 1.54599 * 103.42181 * 219.28655 * 8 7 5 10 10 H 1.08993 * 110.57515 * 81.16966 * 9 8 7 11 11 C 1.53005 * 110.98589 * 204.37343 * 9 8 7 12 12 N 1.46502 * 109.46682 * 288.64713 * 11 9 8 13 13 C 1.36944 * 119.99387 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.38812 * 119.99450 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00491 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99734 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46982 * 89.99857 * 17 15 13 19 19 H 1.48502 * 109.46943 * 210.00033 * 17 15 13 20 20 H 1.48499 * 109.47175 * 330.00165 * 17 15 13 21 21 C 1.54619 * 102.90958 * 322.86271 * 9 8 7 22 22 H 1.08995 * 110.32622 * 262.81038 * 21 9 8 23 23 C 1.52991 * 110.41099 * 140.63700 * 21 9 8 24 24 C 1.47483 * 127.03891 * 0.02562 * 7 5 4 25 25 N 1.31801 * 106.96248 * 0.02562 * 4 3 2 26 26 N 1.28465 * 110.07517 * 359.97438 * 25 4 3 27 27 H 0.97005 * 124.88568 * 180.26434 * 26 25 4 28 28 H 1.09009 * 109.46913 * 269.99265 * 1 2 3 29 29 H 1.08994 * 109.47296 * 29.99360 * 1 2 3 30 30 H 1.09002 * 109.47185 * 149.99778 * 1 2 3 31 31 H 1.08002 * 127.25247 * 359.96664 * 3 2 1 32 32 H 1.09003 * 110.66107 * 337.76570 * 8 7 5 33 33 H 1.08999 * 110.66600 * 100.87700 * 8 7 5 34 34 H 1.08996 * 109.47414 * 48.64623 * 11 9 8 35 35 H 1.08995 * 109.46768 * 168.65033 * 11 9 8 36 36 H 0.96993 * 120.00707 * 359.97438 * 12 11 9 37 37 H 0.96995 * 120.00157 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47507 * 302.87439 * 23 21 9 39 39 H 1.09005 * 109.47480 * 62.87401 * 23 21 9 40 40 H 1.09005 * 109.47056 * 182.87315 * 23 21 9 41 41 H 1.08997 * 109.91135 * 273.88045 * 24 7 5 42 42 H 1.09001 * 109.91190 * 34.96538 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0897 0.0000 4 6 3.6321 0.5853 0.0006 5 6 4.8765 1.3812 0.0014 6 8 4.8213 2.5956 0.0011 7 7 6.0730 0.7609 0.0014 8 6 7.4092 1.4001 -0.0039 9 6 8.2332 0.5012 -0.9542 10 1 8.0349 0.7602 -1.9942 11 6 9.7286 0.6055 -0.6476 12 7 10.2238 1.9172 -1.0725 13 6 11.5430 2.2404 -0.8979 14 1 12.2182 1.5285 -0.4466 15 6 12.0123 3.4831 -1.3010 16 7 11.1893 4.3509 -1.8505 17 14 13.8117 3.9242 -1.0622 18 1 14.5844 3.5190 -2.2638 19 1 13.9396 5.3902 -0.8625 20 1 14.3416 3.2142 0.1296 21 6 7.7060 -0.9163 -0.6326 22 1 8.3689 -1.4155 0.0740 23 6 7.5783 -1.7416 -1.9145 24 6 6.3199 -0.6932 0.0002 25 7 3.5420 -0.7296 0.0004 26 7 2.3081 -1.0871 0.0002 27 1 1.9966 -2.0057 0.0037 28 1 -0.3633 -0.0001 1.0278 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 2.0057 2.1260 -0.0005 32 1 7.3479 2.4162 -0.3937 33 1 7.8413 1.3964 0.9968 34 1 9.8890 0.4863 0.4238 35 1 10.2649 -0.1767 -1.1847 36 1 9.6175 2.5565 -1.4782 37 1 11.5174 5.2190 -2.1325 38 1 6.9229 -1.2249 -2.6156 39 1 8.5631 -1.8691 -2.3642 40 1 7.1581 -2.7190 -1.6770 41 1 6.3131 -1.0717 1.0223 42 1 5.5543 -1.1992 -0.5880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105875932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:42 Heat of formation + Delta-G solvation = 49.845506 kcal Electronic energy + Delta-G solvation = -23207.201492 eV Core-core repulsion = 19803.073835 eV Total energy + Delta-G solvation = -3404.127657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.87749 -39.74985 -37.68120 -34.59277 -33.21025 -32.59120 -31.97765 -31.30719 -29.08883 -27.35584 -26.40554 -25.68619 -23.78644 -22.58174 -21.46621 -21.01070 -19.80457 -18.97117 -17.91409 -17.07416 -16.52868 -16.15709 -15.72047 -15.17520 -14.54077 -14.20511 -14.07665 -13.98701 -13.54338 -13.43589 -13.29842 -13.16048 -12.93664 -12.82098 -12.56739 -12.27721 -12.00384 -11.76306 -11.27318 -11.05766 -10.84555 -10.80612 -10.46372 -10.37797 -10.25461 -9.97804 -9.90750 -9.60316 -9.57454 -9.18880 -8.82142 -8.45170 -6.86214 -5.69654 -2.98908 1.45945 1.90351 2.56738 3.13296 3.46948 3.48217 3.52874 3.55120 4.22263 4.37986 4.58383 4.64538 4.75814 4.87665 5.02808 5.05067 5.18917 5.36372 5.43335 5.45965 5.61575 5.63988 5.65394 5.67584 5.72349 5.91307 5.96950 6.08279 6.14527 6.18210 6.23498 6.29601 6.32896 6.48787 6.59044 6.75252 6.79731 6.92897 7.59347 7.73786 7.75497 8.30661 8.48610 9.59684 10.17566 10.52004 11.53024 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.003138 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.602871 B = 8922.057085 C = 9641.733681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.010 3.990 3 C -0.178 4.178 4 C 0.001 3.999 5 C 0.614 3.386 6 O -0.531 6.531 7 N -0.608 5.608 8 C 0.115 3.885 9 C -0.102 4.102 10 H 0.083 0.917 11 C 0.166 3.834 12 N -0.733 5.733 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.102 4.102 22 H 0.086 0.914 23 C -0.139 4.139 24 C 0.107 3.893 25 N -0.256 5.256 26 N -0.385 5.385 27 H 0.443 0.557 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.023 0.977 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.260 -15.728 3.732 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.160 4.160 5 C 0.401 3.599 6 O -0.406 6.406 7 N -0.340 5.340 8 C -0.006 4.006 9 C -0.122 4.122 10 H 0.102 0.898 11 C 0.038 3.962 12 N -0.377 5.377 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.121 4.121 22 H 0.104 0.896 23 C -0.196 4.196 24 C -0.016 4.016 25 N -0.092 5.092 26 N -0.100 5.100 27 H 0.287 0.713 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.536 -15.928 3.792 27.053 hybrid contribution 0.197 0.621 -0.010 0.652 sum -21.338 -15.307 3.782 26.532 Atomic orbital electron populations 1.20348 0.86554 1.03983 1.03356 1.21446 0.95375 0.87201 1.07535 1.21548 0.90427 0.99846 1.08788 1.21951 0.95121 0.89633 1.09302 1.16469 0.80535 0.85964 0.76977 1.90826 1.86085 1.12638 1.51050 1.48639 1.05500 1.08385 1.71526 1.22545 0.79548 0.98417 1.00105 1.22515 0.96420 0.93170 1.00059 0.89848 1.20623 0.89081 0.89620 0.96922 1.42387 1.08524 1.12905 1.73931 1.19208 0.85964 0.98437 1.33508 0.91202 1.24752 0.97827 0.96766 1.01649 1.69664 1.33807 1.07569 1.46948 0.86198 0.85009 0.77379 0.77642 1.21793 1.21797 1.20800 1.22111 0.95506 0.96567 0.97955 0.89592 1.21807 1.02173 0.98946 0.96713 1.22330 0.97463 0.80885 1.00923 1.73649 1.01050 1.15123 1.19380 1.43379 1.03146 1.09459 1.53977 0.71305 0.90295 0.89453 0.91147 0.81977 0.89162 0.90569 0.96076 0.95910 0.78177 0.93497 0.92754 0.91988 0.92864 0.91927 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 36.01 0.38 0.04 16 2 C 0.01 0.08 7.23 -82.21 -0.59 -0.51 16 3 C -0.18 -2.07 10.73 -39.36 -0.42 -2.50 16 4 C 0.00 0.01 6.99 -82.76 -0.58 -0.56 16 5 C 0.61 10.61 7.90 -12.39 -0.10 10.51 16 6 O -0.53 -10.94 17.13 5.31 0.09 -10.85 16 7 N -0.61 -9.78 3.29 -171.14 -0.56 -10.34 16 8 C 0.12 2.04 6.44 -2.31 -0.01 2.02 16 9 C -0.10 -1.71 2.60 -88.93 -0.23 -1.94 16 10 H 0.08 1.50 7.86 -51.93 -0.41 1.10 16 11 C 0.17 3.32 5.58 -4.04 -0.02 3.30 16 12 N -0.73 -18.88 5.52 -59.91 -0.33 -19.21 16 13 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 17 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.10 -1.33 3.17 -89.25 -0.28 -1.61 16 22 H 0.09 1.04 7.85 -51.93 -0.41 0.64 16 23 C -0.14 -1.61 8.90 37.15 0.33 -1.28 16 24 C 0.11 1.39 5.94 -2.98 -0.02 1.37 16 25 N -0.26 -2.97 9.45 33.42 0.32 -2.66 16 26 N -0.39 -3.06 6.83 33.50 0.23 -2.84 16 27 H 0.44 1.75 8.96 -190.44 -1.71 0.05 16 28 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.09 1.83 7.85 -51.93 -0.41 1.42 16 33 H 0.08 1.34 7.95 -51.93 -0.41 0.92 16 34 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 10.53 7.67 -40.82 -0.31 10.21 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.11 5.74 -51.93 -0.30 0.81 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -35.39 348.78 -8.82 -44.21 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.72 Total: 5.43 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.80 Total: 1.37 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: 0.37 Total: -63.23 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.39 -8.82 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105875932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.057 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds