Wall clock time and date at job start Tue Mar 31 2020 04:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35358 * 126.38398 * 2 1 4 4 C 1.41511 * 105.50131 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51367 * 180.02562 * 4 3 2 6 6 O 1.21561 * 120.00392 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99256 * 180.02562 * 5 4 3 8 8 C 1.48116 * 127.03016 * 179.71041 * 7 5 4 9 9 C 1.54599 * 103.42181 * 219.28655 * 8 7 5 10 10 H 1.08993 * 110.57515 * 81.16966 * 9 8 7 11 11 C 1.53005 * 110.98589 * 204.37343 * 9 8 7 12 12 N 1.46502 * 109.46682 * 288.64713 * 11 9 8 13 13 C 1.36944 * 119.99387 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.38812 * 119.99450 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00491 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99734 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46982 * 89.99857 * 17 15 13 19 19 H 1.48502 * 109.46943 * 210.00033 * 17 15 13 20 20 H 1.48499 * 109.47175 * 330.00165 * 17 15 13 21 21 C 1.54619 * 102.90958 * 322.86271 * 9 8 7 22 22 H 1.08995 * 110.32622 * 262.81038 * 21 9 8 23 23 C 1.52991 * 110.41099 * 140.63700 * 21 9 8 24 24 C 1.47483 * 127.03891 * 0.02562 * 7 5 4 25 25 N 1.31801 * 106.96248 * 0.02562 * 4 3 2 26 26 N 1.28465 * 110.07517 * 359.97438 * 25 4 3 27 27 H 0.97005 * 124.88568 * 180.26434 * 26 25 4 28 28 H 1.09009 * 109.46913 * 269.99265 * 1 2 3 29 29 H 1.08994 * 109.47296 * 29.99360 * 1 2 3 30 30 H 1.09002 * 109.47185 * 149.99778 * 1 2 3 31 31 H 1.08002 * 127.25247 * 359.96664 * 3 2 1 32 32 H 1.09003 * 110.66107 * 337.76570 * 8 7 5 33 33 H 1.08999 * 110.66600 * 100.87700 * 8 7 5 34 34 H 1.08996 * 109.47414 * 48.64623 * 11 9 8 35 35 H 1.08995 * 109.46768 * 168.65033 * 11 9 8 36 36 H 0.96993 * 120.00707 * 359.97438 * 12 11 9 37 37 H 0.96995 * 120.00157 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47507 * 302.87439 * 23 21 9 39 39 H 1.09005 * 109.47480 * 62.87401 * 23 21 9 40 40 H 1.09005 * 109.47056 * 182.87315 * 23 21 9 41 41 H 1.08997 * 109.91135 * 273.88045 * 24 7 5 42 42 H 1.09001 * 109.91190 * 34.96538 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0897 0.0000 4 6 3.6321 0.5853 0.0006 5 6 4.8765 1.3812 0.0014 6 8 4.8213 2.5956 0.0011 7 7 6.0730 0.7609 0.0014 8 6 7.4092 1.4001 -0.0039 9 6 8.2332 0.5012 -0.9542 10 1 8.0349 0.7602 -1.9942 11 6 9.7286 0.6055 -0.6476 12 7 10.2238 1.9172 -1.0725 13 6 11.5430 2.2404 -0.8979 14 1 12.2182 1.5285 -0.4466 15 6 12.0123 3.4831 -1.3010 16 7 11.1893 4.3509 -1.8505 17 14 13.8117 3.9242 -1.0622 18 1 14.5844 3.5190 -2.2638 19 1 13.9396 5.3902 -0.8625 20 1 14.3416 3.2142 0.1296 21 6 7.7060 -0.9163 -0.6326 22 1 8.3689 -1.4155 0.0740 23 6 7.5783 -1.7416 -1.9145 24 6 6.3199 -0.6932 0.0002 25 7 3.5420 -0.7296 0.0004 26 7 2.3081 -1.0871 0.0002 27 1 1.9966 -2.0057 0.0037 28 1 -0.3633 -0.0001 1.0278 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 2.0057 2.1260 -0.0005 32 1 7.3479 2.4162 -0.3937 33 1 7.8413 1.3964 0.9968 34 1 9.8890 0.4863 0.4238 35 1 10.2649 -0.1767 -1.1847 36 1 9.6175 2.5565 -1.4782 37 1 11.5174 5.2190 -2.1325 38 1 6.9229 -1.2249 -2.6156 39 1 8.5631 -1.8691 -2.3642 40 1 7.1581 -2.7190 -1.6770 41 1 6.3131 -1.0717 1.0223 42 1 5.5543 -1.1992 -0.5880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105875932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:41 Heat of formation + Delta-G solvation = 24.457411 kcal Electronic energy + Delta-G solvation = -23208.302402 eV Core-core repulsion = 19803.073835 eV Total energy + Delta-G solvation = -3405.228568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70075 -41.05066 -39.05800 -36.45692 -34.37195 -33.54620 -33.04722 -32.87462 -30.69988 -28.04845 -27.55811 -27.14126 -25.43091 -24.05830 -22.40331 -22.23455 -21.13017 -20.17245 -19.05220 -18.71493 -17.70437 -17.33166 -16.88281 -16.58623 -16.24434 -15.62593 -15.36286 -15.13643 -14.86148 -14.79433 -14.41365 -14.09886 -13.99634 -13.70828 -13.64985 -13.38830 -13.19994 -13.04473 -12.90726 -12.73675 -12.47225 -12.15057 -11.96367 -11.85042 -11.75861 -11.56139 -11.38567 -11.25969 -10.92565 -10.48130 -9.93021 -9.75029 -8.99254 -7.93201 -5.22997 0.45018 1.09632 1.47371 1.50011 1.58415 1.69724 2.12974 2.26758 2.57034 3.21624 3.40073 3.53771 3.60065 3.79657 3.81972 4.00677 4.20103 4.25918 4.39121 4.42918 4.52614 4.56993 4.59194 4.72676 4.80132 4.81793 4.85954 4.88705 5.02535 5.06478 5.08072 5.14248 5.19976 5.25453 5.31699 5.37296 5.50306 5.54959 6.12583 6.28017 6.44428 6.77706 7.03939 7.33840 8.09885 8.32136 9.30613 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.003138 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.602871 B = 8922.057085 C = 9641.733681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 C -0.210 4.210 4 C -0.031 4.031 5 C 0.605 3.395 6 O -0.582 6.582 7 N -0.608 5.608 8 C 0.117 3.883 9 C -0.092 4.092 10 H 0.066 0.934 11 C 0.166 3.834 12 N -0.749 5.749 13 C -0.243 4.243 14 H 0.081 0.919 15 C -0.080 4.080 16 N -0.973 5.973 17 Si 0.976 3.024 18 H -0.286 1.286 19 H -0.298 1.298 20 H -0.267 1.267 21 C -0.091 4.091 22 H 0.105 0.895 23 C -0.135 4.135 24 C 0.111 3.889 25 N -0.257 5.257 26 N -0.362 5.362 27 H 0.463 0.537 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.030 0.970 35 H 0.034 0.966 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 -19.196 4.411 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.238 4.238 4 C -0.190 4.190 5 C 0.394 3.606 6 O -0.461 6.461 7 N -0.340 5.340 8 C -0.005 4.005 9 C -0.111 4.111 10 H 0.084 0.916 11 C 0.040 3.960 12 N -0.391 5.391 13 C -0.374 4.374 14 H 0.098 0.902 15 C -0.272 4.272 16 N -0.624 5.624 17 Si 0.805 3.195 18 H -0.213 1.213 19 H -0.225 1.225 20 H -0.191 1.191 21 C -0.110 4.110 22 H 0.123 0.877 23 C -0.192 4.192 24 C -0.011 4.011 25 N -0.095 5.095 26 N -0.080 5.080 27 H 0.312 0.688 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.784 -19.504 4.490 30.326 hybrid contribution 0.464 1.589 -0.195 1.667 sum -22.320 -17.915 4.294 28.941 Atomic orbital electron populations 1.20548 0.83065 1.05612 1.04864 1.21909 0.97023 0.85775 1.04144 1.21711 0.90239 1.00972 1.10840 1.21546 0.94306 0.90631 1.12551 1.17040 0.81729 0.85829 0.76006 1.90776 1.86963 1.14897 1.53433 1.48717 1.04585 1.09716 1.70982 1.22343 0.81187 0.96952 1.00026 1.22328 0.94313 0.95846 0.98645 0.91582 1.20783 0.90983 0.87140 0.97101 1.42649 1.07760 1.14729 1.73964 1.19671 0.87182 0.98493 1.32091 0.90153 1.25641 1.02273 0.97001 1.02317 1.69847 1.35844 1.07828 1.48846 0.85097 0.79813 0.76542 0.78050 1.21276 1.22493 1.19127 1.22122 0.95514 0.94086 0.99323 0.87680 1.21788 1.02087 0.99921 0.95437 1.22506 0.97621 0.78813 1.02179 1.73517 1.02841 1.13692 1.19438 1.43485 1.02131 1.10686 1.51719 0.68770 0.88677 0.88946 0.88423 0.82523 0.93078 0.90571 0.95254 0.94844 0.79761 0.94114 0.93734 0.92263 0.89891 0.90229 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.44 71.24 0.74 0.39 16 2 C 0.04 0.52 7.23 41.40 0.30 0.82 16 3 C -0.21 -4.83 10.73 22.41 0.24 -4.59 16 4 C -0.03 -0.89 6.99 42.46 0.30 -0.59 16 5 C 0.61 22.01 7.90 86.75 0.69 22.69 16 6 O -0.58 -25.97 17.13 -3.91 -0.07 -26.04 16 7 N -0.61 -20.11 3.29 -813.64 -2.68 -22.79 16 8 C 0.12 4.37 6.44 86.61 0.56 4.93 16 9 C -0.09 -3.11 2.60 -9.70 -0.03 -3.13 16 10 H 0.07 2.48 7.86 -2.39 -0.02 2.46 16 11 C 0.17 6.64 5.58 86.38 0.48 7.13 16 12 N -0.75 -39.47 5.52 -343.45 -1.90 -41.37 16 13 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 14 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 15 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 16 N -0.97 -62.36 13.06 21.65 0.28 -62.08 16 17 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 C -0.09 -2.20 3.17 -9.91 -0.03 -2.23 16 22 H 0.11 2.21 7.85 -2.39 -0.02 2.19 16 23 C -0.14 -2.79 8.90 71.98 0.64 -2.15 16 24 C 0.11 2.70 5.94 86.53 0.51 3.21 16 25 N -0.26 -5.49 9.45 -48.17 -0.46 -5.95 16 26 N -0.36 -4.65 6.83 -47.93 -0.33 -4.97 16 27 H 0.46 1.74 8.96 -219.99 -1.97 -0.23 16 28 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.05 2.28 7.85 -2.39 -0.02 2.26 16 33 H 0.08 2.79 7.95 -2.39 -0.02 2.77 16 34 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.37 21.33 7.67 -92.71 -0.71 20.62 16 37 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 2.27 5.74 -2.39 -0.01 2.26 16 Total: -1.00 -80.72 348.78 0.95 -79.77 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -1.64 Total: 24.81 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.71 Total: 9.11 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -5.08 Total: -137.16 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.07 Total: -26.04 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -80.72 0.95 -79.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105875932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.223 kcal (2) G-P(sol) polarization free energy of solvation -80.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds