Wall clock time and date at job start Tue Mar 31 2020 04:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33319 * 126.10587 * 2 1 4 4 C 1.30861 * 109.67994 * 179.97438 * 3 2 1 5 5 N 1.34490 * 109.16633 * 359.97438 * 4 3 2 6 6 H 0.97002 * 126.47479 * 179.73463 * 5 4 3 7 7 C 1.36666 * 126.10673 * 179.97438 * 2 1 3 8 8 C 1.46763 * 126.84182 * 0.02562 * 7 2 1 9 9 O 1.21680 * 120.00201 * 6.16058 * 8 7 2 10 10 N 1.34778 * 119.99760 * 186.15662 * 8 7 2 11 11 C 1.48123 * 127.03358 * 185.24526 * 10 8 7 12 12 C 1.54592 * 103.42282 * 219.29012 * 11 10 8 13 13 H 1.08999 * 110.57926 * 81.16789 * 12 11 10 14 14 C 1.53007 * 110.98838 * 204.37557 * 12 11 10 15 15 N 1.46498 * 109.46679 * 288.65063 * 14 12 11 16 16 C 1.36941 * 119.99596 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00217 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99569 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00405 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47026 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47377 * 119.99485 * 20 18 16 23 23 H 1.48495 * 109.46925 * 239.99759 * 20 18 16 24 24 C 1.54615 * 102.91150 * 322.86852 * 12 11 10 25 25 H 1.09000 * 110.32580 * 262.80738 * 24 12 11 26 26 C 1.53001 * 110.41271 * 140.63853 * 24 12 11 27 27 C 1.47483 * 127.03411 * 5.56599 * 10 8 7 28 28 H 1.08999 * 109.47289 * 89.97572 * 1 2 3 29 29 H 1.09000 * 109.47204 * 209.97994 * 1 2 3 30 30 H 1.09009 * 109.46951 * 329.97671 * 1 2 3 31 31 H 1.08003 * 125.41638 * 179.97438 * 4 3 2 32 32 H 1.09004 * 110.65942 * 337.77490 * 11 10 8 33 33 H 1.09000 * 110.65954 * 100.88882 * 11 10 8 34 34 H 1.08993 * 109.46679 * 48.65055 * 14 12 11 35 35 H 1.08994 * 109.46905 * 168.65278 * 14 12 11 36 36 H 0.97001 * 120.00233 * 0.02562 * 15 14 12 37 37 H 0.96999 * 120.00237 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47192 * 302.86973 * 26 24 12 39 39 H 1.09002 * 109.47162 * 62.87412 * 26 24 12 40 40 H 1.08998 * 109.47086 * 182.87318 * 26 24 12 41 41 H 1.08997 * 109.91151 * 273.87155 * 27 10 8 42 42 H 1.09005 * 109.91529 * 35.15692 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7071 0.0006 5 7 3.6121 -0.6363 0.0015 6 1 4.4188 -1.1750 -0.0016 7 6 2.3123 -1.1042 0.0005 8 6 1.8820 -2.5073 0.0006 9 8 0.7020 -2.7818 -0.1129 10 7 2.7938 -3.4918 0.1263 11 6 2.5500 -4.9501 0.0387 12 6 3.4607 -5.5333 1.1434 13 1 2.9825 -5.4474 2.1191 14 6 3.8204 -6.9902 0.8448 15 7 2.6393 -7.8346 1.0404 16 6 2.7209 -9.1852 0.8298 17 1 3.6559 -9.6280 0.5200 18 6 1.6016 -9.9852 1.0147 19 7 0.4622 -9.4458 1.3928 20 14 1.7130 -11.8278 0.7281 21 1 3.0941 -12.1815 0.3123 22 1 1.3745 -12.5454 1.9834 23 1 0.7590 -12.2212 -0.3397 24 6 4.7155 -4.6330 1.0676 25 1 5.4899 -5.1125 0.4689 26 6 5.2414 -4.3313 2.4723 27 6 4.2375 -3.3376 0.3856 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8899 0.5142 31 1 4.3970 1.3744 0.0003 32 1 1.5039 -5.1781 0.2436 33 1 2.8432 -5.3310 -0.9395 34 1 4.1616 -7.0760 -0.1868 35 1 4.6140 -7.3138 1.5182 36 1 1.7994 -7.4368 1.3183 37 1 -0.3198 -10.0049 1.5223 38 1 4.4535 -3.8635 3.0626 39 1 5.5517 -5.2600 2.9514 40 1 6.0938 -3.6555 2.4037 41 1 4.7703 -3.1945 -0.5544 42 1 4.4074 -2.4864 1.0451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107095199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:46 Heat of formation + Delta-G solvation = 12.889717 kcal Electronic energy + Delta-G solvation = -23509.377647 eV Core-core repulsion = 20103.647467 eV Total energy + Delta-G solvation = -3405.730180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.30910 -41.02611 -39.10588 -36.53986 -34.73675 -33.86021 -33.10449 -32.26928 -30.68235 -28.70081 -27.36594 -26.99508 -25.15462 -23.73270 -22.48542 -22.19237 -21.18399 -20.55668 -19.31523 -18.65912 -17.49003 -17.38651 -16.83411 -16.63120 -16.11093 -15.59755 -15.51248 -15.27848 -15.06376 -14.91714 -14.42975 -14.12339 -13.99930 -13.78426 -13.69655 -13.41062 -13.20779 -13.11951 -12.94237 -12.80089 -12.47880 -12.11907 -11.97974 -11.85879 -11.66731 -11.50722 -11.46202 -11.03824 -10.99997 -10.94519 -9.99900 -9.49970 -9.00953 -7.95280 -5.24915 0.20110 1.46836 1.47958 1.57938 1.63235 1.80283 2.04560 2.17100 2.55412 3.28631 3.39009 3.42354 3.52345 3.70000 3.75533 4.02932 4.07630 4.18060 4.22820 4.31757 4.40886 4.47408 4.53751 4.65879 4.70965 4.76821 4.77536 4.83167 4.90960 4.96908 5.01156 5.05975 5.15948 5.22517 5.30396 5.46731 5.49660 5.50788 6.26169 6.30725 6.35143 6.85161 6.93917 7.32207 8.08435 8.29527 9.28539 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.003431 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.682152 B = 8157.910083 C = 9030.247553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.080 3.920 3 N -0.533 5.533 4 C 0.244 3.756 5 N -0.544 5.544 6 H 0.438 0.562 7 C -0.104 4.104 8 C 0.602 3.398 9 O -0.568 6.568 10 N -0.620 5.620 11 C 0.119 3.881 12 C -0.093 4.093 13 H 0.063 0.937 14 C 0.165 3.835 15 N -0.749 5.749 16 C -0.242 4.242 17 H 0.081 0.919 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.261 1.261 22 H -0.295 1.295 23 H -0.296 1.296 24 C -0.087 4.087 25 H 0.112 0.888 26 C -0.140 4.140 27 C 0.091 3.909 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.269 0.731 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.436 21.393 -2.184 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 N -0.254 5.254 4 C -0.041 4.041 5 N -0.153 5.153 6 H 0.284 0.716 7 C -0.220 4.220 8 C 0.393 3.607 9 O -0.447 6.447 10 N -0.353 5.353 11 C -0.003 4.003 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.039 3.961 15 N -0.391 5.391 16 C -0.374 4.374 17 H 0.099 0.901 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.223 1.223 24 C -0.106 4.106 25 H 0.130 0.870 26 C -0.198 4.198 27 C -0.031 4.031 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.285 0.715 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.599 21.938 -2.308 26.452 hybrid contribution -0.387 -2.284 0.076 2.318 sum 14.212 19.654 -2.233 24.356 Atomic orbital electron populations 1.20219 0.86941 1.03081 1.03065 1.21239 0.97331 0.87398 0.99476 1.70152 1.02060 1.30354 1.22822 1.26208 0.97636 0.82338 0.97886 1.43732 1.07286 1.09205 1.55108 0.71620 1.20476 0.86211 0.93243 1.22025 1.16828 0.84436 0.83082 0.76373 1.90831 1.17823 1.83314 1.52769 1.48751 1.09782 1.06241 1.70513 1.22316 0.99956 0.78574 0.99456 1.22336 0.96546 0.94660 0.97789 0.91806 1.20797 0.89362 0.87875 0.98076 1.42654 1.09634 1.04313 1.82547 1.19696 0.95954 0.84957 1.36761 0.90111 1.25618 0.95633 1.02627 1.03246 1.69844 1.01232 1.35797 1.55417 0.85062 0.77778 0.80184 0.76668 1.18558 1.22197 1.22336 1.22076 0.96369 0.93337 0.98831 0.86979 1.21849 1.01340 1.02465 0.94109 1.22710 0.79154 0.99561 1.01636 0.90563 0.91459 0.89864 0.71540 0.93255 0.90318 0.95094 0.94945 0.79796 0.94135 0.93763 0.92437 0.89211 0.87969 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 9.82 71.24 0.70 -1.24 16 2 C 0.08 2.09 7.14 41.96 0.30 2.39 16 3 N -0.53 -11.70 11.20 -187.59 -2.10 -13.80 16 4 C 0.24 2.97 13.01 180.33 2.35 5.31 16 5 N -0.54 -7.38 5.47 -188.05 -1.03 -8.41 16 6 H 0.44 2.90 5.65 -92.71 -0.52 2.38 16 7 C -0.10 -2.55 6.85 40.01 0.27 -2.27 16 8 C 0.60 18.81 7.85 86.47 0.68 19.48 16 9 O -0.57 -22.84 15.09 -4.28 -0.06 -22.90 16 10 N -0.62 -16.49 3.29 -814.67 -2.68 -19.17 16 11 C 0.12 3.89 6.47 86.61 0.56 4.44 16 12 C -0.09 -2.77 2.60 -9.70 -0.03 -2.79 16 13 H 0.06 2.17 7.86 -2.39 -0.02 2.15 16 14 C 0.17 6.06 5.59 86.38 0.48 6.54 16 15 N -0.75 -37.72 5.52 -343.46 -1.90 -39.61 16 16 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 20 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 C -0.09 -1.55 3.17 -9.90 -0.03 -1.58 16 25 H 0.11 1.62 7.85 -2.39 -0.02 1.60 16 26 C -0.14 -2.14 8.90 71.98 0.64 -1.50 16 27 C 0.09 1.39 5.05 86.53 0.44 1.83 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 2.00 6.62 -2.39 -0.02 1.98 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.27 0.01 8.06 -2.91 -0.02 -0.01 16 32 H 0.05 2.03 7.81 -2.38 -0.02 2.01 16 33 H 0.08 2.50 7.95 -2.39 -0.02 2.48 16 34 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.37 20.51 7.67 -92.71 -0.71 19.80 16 37 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.95 7.98 -2.39 -0.02 0.93 16 42 H 0.09 0.98 5.68 -2.38 -0.01 0.97 16 Total: -1.00 -80.57 342.56 2.01 -78.55 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.19 Total: 23.72 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 7.67 Total: 13.92 kcal Atomic # 7 Polarization: -134.30 SS G_CDS: -7.43 Total: -141.72 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.06 Total: -22.90 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -80.57 2.01 -78.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107095199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.442 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds