Wall clock time and date at job start Tue Mar 31 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42894 * 109.46885 * 107.18305 * 3 2 1 5 5 C 1.42908 * 113.99866 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47240 * 330.00310 * 5 4 3 7 7 C 1.53000 * 109.46988 * 89.99815 * 5 4 3 8 8 C 1.50704 * 109.46970 * 209.99767 * 5 4 3 9 9 O 1.21273 * 119.99856 * 355.00248 * 8 5 4 10 10 N 1.34779 * 119.99348 * 174.99936 * 8 5 4 11 11 C 1.46499 * 119.99462 * 179.72693 * 10 8 5 12 12 H 1.09005 * 110.56086 * 32.96654 * 11 10 8 13 13 C 1.54853 * 110.62760 * 155.86903 * 11 10 8 14 14 C 1.55842 * 103.44698 * 118.49002 * 13 11 10 15 15 H 1.08998 * 115.56291 * 159.56810 * 14 13 11 16 16 C 1.55844 * 105.06288 * 288.17890 * 14 13 11 17 17 C 1.54853 * 103.44860 * 71.82228 * 16 14 13 18 18 C 1.55845 * 110.62765 * 270.07021 * 11 10 8 19 19 H 1.08998 * 115.56591 * 81.94367 * 18 11 10 20 20 N 1.50243 * 101.05055 * 32.93801 * 14 13 11 21 21 C 1.36930 * 130.83742 * 126.03248 * 20 14 13 22 22 H 1.08008 * 120.00233 * 180.02562 * 21 20 14 23 23 C 1.38810 * 120.00258 * 0.02562 * 21 20 14 24 24 N 1.31615 * 119.99754 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00353 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47148 * 59.99561 * 25 23 21 27 27 H 1.48494 * 109.47126 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47074 * 299.99793 * 25 23 21 29 29 H 4.38437 * 5.44417 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47396 * 347.17940 * 3 2 1 31 31 H 1.09003 * 109.47202 * 227.18252 * 3 2 1 32 32 H 1.09002 * 109.47222 * 179.97438 * 7 5 4 33 33 H 1.08997 * 109.47435 * 300.00138 * 7 5 4 34 34 H 1.09002 * 109.47211 * 60.00055 * 7 5 4 35 35 H 0.96996 * 120.00679 * 0.02562 * 10 8 5 36 36 H 1.08996 * 110.62488 * 236.97660 * 13 11 10 37 37 H 1.08999 * 110.62267 * 0.02562 * 13 11 10 38 38 H 1.09002 * 110.62722 * 190.31260 * 16 14 13 39 39 H 1.09002 * 110.62599 * 313.17135 * 16 14 13 40 40 H 1.09006 * 110.62518 * 118.48780 * 17 16 14 41 41 H 1.08997 * 110.62836 * 241.35284 * 17 16 14 42 42 H 0.97004 * 120.00029 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.3989 -1.2871 5 6 4.5467 0.4334 -1.3948 6 1 4.9789 0.6711 -0.4228 7 6 5.0563 -0.9325 -1.8591 8 6 4.9495 1.4864 -2.3948 9 8 4.1006 2.0794 -3.0260 10 7 6.2531 1.7690 -2.5876 11 6 6.6450 2.7883 -3.5641 12 1 5.8975 3.5803 -3.6117 13 6 8.0363 3.3718 -3.2151 14 6 8.9047 3.0051 -4.4562 15 1 9.8080 3.6000 -4.5905 16 6 9.1223 1.4650 -4.3575 17 6 7.7309 0.8816 -4.7064 18 6 6.8579 2.1493 -4.9694 19 1 5.9528 1.9889 -5.5552 20 7 7.8831 3.0816 -5.5552 21 6 7.8828 3.7852 -6.7299 22 1 7.0420 3.7106 -7.4039 23 6 8.9629 4.5943 -7.0547 24 7 9.9872 4.6856 -6.2333 25 14 8.9621 5.5547 -8.6570 26 1 7.8011 6.4803 -8.6787 27 1 10.2204 6.3354 -8.7667 28 1 8.8643 4.6112 -9.7996 29 1 -1.0500 0.0001 0.0002 30 1 3.0098 -1.0012 0.2280 31 1 3.0091 0.6993 0.7538 32 1 6.1429 -0.9060 -1.9416 33 1 4.7649 -1.6941 -1.1358 34 1 4.6241 -1.1703 -2.8311 35 1 6.9321 1.2944 -2.0830 36 1 7.9794 4.4533 -3.0925 37 1 8.4349 2.9023 -2.3158 38 1 9.8690 1.1356 -5.0800 39 1 9.4172 1.1829 -3.3467 40 1 7.7876 0.2629 -5.6021 41 1 7.3343 0.3075 -3.8691 42 1 10.7418 5.2513 -6.4601 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109266115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:41 Heat of formation + Delta-G solvation = 5.858430 kcal Electronic energy + Delta-G solvation = -23789.894646 eV Core-core repulsion = 20351.566815 eV Total energy + Delta-G solvation = -3438.327831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56368 -40.19941 -38.64807 -35.50614 -34.48253 -34.16734 -32.29610 -30.98668 -30.58088 -29.10057 -28.04224 -26.26294 -24.96738 -22.85274 -21.85715 -21.14286 -20.15502 -19.64982 -18.94557 -18.05812 -17.95923 -16.88099 -16.79395 -16.54694 -16.20285 -15.88466 -15.70935 -15.29815 -14.69097 -14.14300 -13.93041 -13.86885 -13.55703 -13.39014 -13.19878 -13.11499 -12.86993 -12.78719 -12.58417 -12.38817 -12.36402 -12.01456 -11.90463 -11.69019 -11.56065 -11.54131 -11.15442 -11.03295 -10.82870 -10.76232 -10.39646 -9.99203 -8.85330 -7.79999 -5.18722 1.37807 1.45532 1.47757 1.53838 1.63465 1.82539 2.13173 2.49630 3.07526 3.33269 3.48822 3.62283 3.75156 3.95761 3.98813 4.08922 4.14634 4.16703 4.28841 4.44156 4.48419 4.50272 4.62054 4.72905 4.76674 4.83197 4.86351 4.98590 5.02440 5.08351 5.17002 5.23600 5.29691 5.34049 5.48314 5.55358 5.77049 5.90478 6.05268 6.27433 6.60433 6.66923 7.06125 7.33930 7.68881 8.55080 9.26749 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.003417 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.194078 B = 8193.065541 C = 8642.619981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.237 4.237 3 C 0.163 3.837 4 O -0.391 6.391 5 C 0.077 3.923 6 H 0.131 0.869 7 C -0.167 4.167 8 C 0.504 3.496 9 O -0.583 6.583 10 N -0.691 5.691 11 C 0.146 3.854 12 H 0.047 0.953 13 C -0.125 4.125 14 C 0.140 3.860 15 H 0.119 0.881 16 C -0.125 4.125 17 C -0.115 4.115 18 C 0.115 3.885 19 H 0.062 0.938 20 N -0.619 5.619 21 C -0.228 4.228 22 H 0.068 0.932 23 C -0.062 4.062 24 N -0.943 5.943 25 Si 0.974 3.026 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.282 1.282 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.417 0.583 36 H 0.044 0.956 37 H 0.102 0.898 38 H 0.034 0.966 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.092 0.908 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.323 -13.692 17.634 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.237 4.237 3 C 0.088 3.912 4 O -0.310 6.310 5 C 0.017 3.983 6 H 0.148 0.852 7 C -0.225 4.225 8 C 0.291 3.709 9 O -0.461 6.461 10 N -0.345 5.345 11 C 0.039 3.961 12 H 0.066 0.934 13 C -0.165 4.165 14 C 0.034 3.966 15 H 0.136 0.864 16 C -0.164 4.164 17 C -0.154 4.154 18 C 0.007 3.993 19 H 0.080 0.920 20 N -0.341 5.341 21 C -0.357 4.357 22 H 0.086 0.914 23 C -0.254 4.254 24 N -0.592 5.592 25 Si 0.803 3.197 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.208 1.208 29 H 0.267 0.733 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.256 0.744 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.908 -13.021 16.821 22.695 hybrid contribution 0.042 0.772 -1.093 1.338 sum -7.867 -12.250 15.729 21.432 Atomic orbital electron populations 1.25867 0.96978 0.99491 0.96382 1.23241 0.95235 1.01925 1.03320 1.19497 0.84377 1.02138 0.85142 1.88091 1.20542 1.89520 1.32870 1.22073 0.82206 0.94727 0.99309 0.85151 1.22281 1.03085 0.94306 1.02807 1.21203 0.82519 0.83522 0.83672 1.90715 1.51827 1.53311 1.50276 1.45852 1.06838 1.40275 1.41534 1.22078 0.95967 0.89553 0.88546 0.93426 1.23133 0.94091 0.99514 0.99731 1.23636 0.93995 0.94688 0.84275 0.86388 1.22953 0.95833 0.96912 1.00726 1.22867 0.95782 0.96120 1.00627 1.23424 0.91932 0.91711 0.92233 0.91999 1.46764 1.17792 1.50559 1.18966 1.19254 1.02252 1.19065 0.95137 0.91417 1.25386 0.96542 1.01713 1.01803 1.69675 1.08557 1.43495 1.37468 0.85210 0.76528 0.78313 0.79615 1.21136 1.21454 1.20841 0.73295 0.87688 0.88873 0.88340 0.88524 0.93318 0.74378 0.93748 0.87971 0.94679 0.88875 0.94091 0.88950 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 19.25 74.32 1.43 -1.59 16 2 C -0.24 -4.98 13.73 31.13 0.43 -4.55 16 3 C 0.16 2.73 6.22 70.18 0.44 3.17 16 4 O -0.39 -9.84 9.48 -129.99 -1.23 -11.07 16 5 C 0.08 1.46 3.13 29.85 0.09 1.55 16 6 H 0.13 1.32 7.79 -2.39 -0.02 1.30 16 7 C -0.17 -2.24 9.48 71.98 0.68 -1.56 16 8 C 0.50 14.81 7.18 87.66 0.63 15.44 16 9 O -0.58 -24.68 16.16 15.98 0.26 -24.43 16 10 N -0.69 -17.83 3.68 -434.91 -1.60 -19.43 16 11 C 0.15 5.35 3.13 46.61 0.15 5.50 16 12 H 0.05 2.11 7.57 -2.38 -0.02 2.09 16 13 C -0.13 -4.48 6.20 32.21 0.20 -4.28 16 14 C 0.14 6.16 4.69 46.23 0.22 6.38 16 15 H 0.12 6.11 5.57 -2.39 -0.01 6.10 16 16 C -0.13 -4.37 6.44 32.21 0.21 -4.16 16 17 C -0.11 -3.86 6.31 32.32 0.20 -3.66 16 18 C 0.11 4.86 5.39 46.30 0.25 5.11 16 19 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 20 N -0.62 -31.61 2.98 -614.15 -1.83 -33.44 16 21 C -0.23 -13.13 10.58 84.03 0.89 -12.24 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 24 N -0.94 -54.83 10.48 21.65 0.23 -54.60 16 25 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 26 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 29 H 0.25 2.31 7.80 -4.42 -0.03 2.27 16 30 H 0.11 1.05 7.87 -2.39 -0.02 1.03 16 31 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 32 H 0.10 0.87 7.92 -2.39 -0.02 0.85 16 33 H 0.10 0.79 7.87 -2.39 -0.02 0.77 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.42 7.00 7.69 -92.71 -0.71 6.29 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 2.66 7.39 -2.39 -0.02 2.64 16 38 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 2.37 7.82 -2.39 -0.02 2.36 16 40 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 41 H 0.09 2.31 6.39 -2.39 -0.02 2.30 16 42 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -80.22 347.52 4.43 -75.79 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.31 Total: 16.40 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.28 Total: 2.07 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -3.21 Total: -107.47 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.97 Total: -35.50 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -80.22 4.43 -75.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109266115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.649 kcal (2) G-P(sol) polarization free energy of solvation -80.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds