Wall clock time and date at job start Tue Mar 31 2020 03:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42894 * 109.47366 * 96.22181 * 3 2 1 5 5 C 1.42902 * 114.00165 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47062 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46636 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00233 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99316 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99453 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.55813 * 33.05992 * 10 9 7 12 12 C 1.54854 * 110.62339 * 155.95714 * 10 9 7 13 13 C 1.55844 * 103.44617 * 118.64859 * 12 10 9 14 14 H 1.09005 * 115.56168 * 158.81010 * 13 12 10 15 15 C 1.55841 * 105.06269 * 288.17341 * 13 12 10 16 16 C 1.54854 * 103.44389 * 71.82493 * 15 13 12 17 17 C 1.55841 * 110.76436 * 270.06007 * 10 9 7 18 18 H 1.09001 * 115.56153 * 82.63117 * 17 10 9 19 19 N 1.50237 * 101.05105 * 208.50903 * 17 10 9 20 20 C 1.36938 * 130.83944 * 233.98462 * 19 17 10 21 21 H 1.07996 * 119.99532 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99786 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99654 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46976 * 90.00272 * 24 22 20 26 26 H 1.48494 * 109.47180 * 210.00030 * 24 22 20 27 27 H 1.48497 * 109.47416 * 330.00196 * 24 22 20 28 28 H 4.38444 * 5.44495 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46634 * 336.21950 * 3 2 1 30 30 H 1.08994 * 109.46978 * 216.22404 * 3 2 1 31 31 H 1.08995 * 109.46924 * 60.00257 * 5 4 3 32 32 H 1.09000 * 109.47124 * 300.00066 * 5 4 3 33 33 H 1.08995 * 109.46994 * 60.00358 * 6 5 4 34 34 H 1.09000 * 109.47253 * 300.00045 * 6 5 4 35 35 H 0.96999 * 120.00452 * 0.02562 * 9 7 6 36 36 H 1.08998 * 110.62411 * 237.13824 * 12 10 9 37 37 H 1.08995 * 110.62766 * 0.15689 * 12 10 9 38 38 H 1.09007 * 110.62512 * 190.30943 * 15 13 12 39 39 H 1.08997 * 110.62829 * 313.17320 * 15 13 12 40 40 H 1.09002 * 110.62596 * 241.50557 * 16 15 13 41 41 H 1.09001 * 110.62477 * 118.48789 * 16 15 13 42 42 H 0.97004 * 119.99959 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1469 -1.3393 5 6 4.5468 0.1592 -1.4515 6 6 4.9413 0.3190 -2.9211 7 6 6.4436 0.3325 -3.0393 8 8 7.1310 0.2245 -2.0460 9 7 7.0232 0.4637 -4.2490 10 6 8.4836 0.4763 -4.3640 11 1 8.9328 -0.1657 -3.6063 12 6 8.9229 0.0361 -5.7822 13 6 9.6793 1.2834 -6.3308 14 1 10.3730 1.0905 -7.1491 15 6 8.5687 2.3411 -6.6075 16 6 8.1294 2.7813 -5.1893 17 6 9.0343 1.9296 -4.2489 18 1 9.1600 2.3059 -3.2336 19 7 10.2883 1.8283 -5.0701 20 6 11.5868 2.1372 -4.7637 21 1 11.8334 2.5243 -3.7862 22 6 12.5858 1.9526 -5.7097 23 7 12.2850 1.4813 -6.9011 24 14 14.3572 2.3733 -5.2915 25 1 15.0265 1.1797 -4.7149 26 1 15.0704 2.7936 -6.5242 27 1 14.3827 3.4810 -4.3028 28 1 -1.0500 0.0002 0.0000 29 1 3.0097 -0.9396 0.4144 30 1 3.0089 0.8298 0.6073 31 1 4.9496 -0.7780 -1.0674 32 1 4.9496 0.9914 -0.8742 33 1 4.5385 1.2560 -3.3056 34 1 4.5386 -0.5136 -3.4980 35 1 6.4734 0.5497 -5.0435 36 1 9.5900 -0.8242 -5.7277 37 1 8.0542 -0.1889 -6.4007 38 1 8.9737 3.1866 -7.1637 39 1 7.7359 1.8911 -7.1478 40 1 7.0774 2.5490 -5.0238 41 1 8.3165 3.8450 -5.0423 42 1 12.9832 1.3520 -7.5620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109272376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:25 Heat of formation + Delta-G solvation = 20.471495 kcal Electronic energy + Delta-G solvation = -23141.213064 eV Core-core repulsion = 19703.518903 eV Total energy + Delta-G solvation = -3437.694161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.09048 -38.73558 -37.98334 -33.95007 -33.74960 -32.38261 -31.58642 -29.30101 -29.02770 -27.76265 -27.02143 -24.41765 -23.51974 -21.33531 -20.41200 -19.52603 -18.78869 -18.52022 -17.50932 -16.98585 -16.61889 -16.05325 -15.57161 -15.19767 -15.02102 -14.84513 -14.40497 -13.96617 -13.46244 -13.35004 -12.92214 -12.32331 -12.25968 -11.86143 -11.72689 -11.68437 -11.48606 -11.05373 -10.92635 -10.90116 -10.86231 -10.83916 -10.73890 -10.23523 -10.10885 -9.88208 -9.83053 -9.68274 -9.37587 -9.25262 -8.94149 -8.52497 -6.92455 -5.73644 -3.11682 2.14995 2.46790 2.81476 3.23366 3.39545 3.44623 3.46104 3.78872 4.27990 4.45617 4.69645 4.87177 4.94005 5.07687 5.11134 5.19851 5.36712 5.37401 5.55065 5.57802 5.62480 5.66229 5.79976 5.83746 5.96192 6.05794 6.11207 6.29783 6.31895 6.52916 6.59015 6.67241 6.80132 6.82914 6.95085 6.98620 7.22191 7.26374 7.51594 7.72571 7.82371 8.16080 8.45303 9.09607 9.72160 10.52370 11.35965 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037205 B = 0.002784 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.405243 B =10054.223791 C =10382.189659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.190 4.190 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.140 4.140 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.710 5.710 10 C 0.126 3.874 11 H 0.084 0.916 12 C -0.142 4.142 13 C 0.154 3.846 14 H 0.155 0.845 15 C -0.137 4.137 16 C -0.130 4.130 17 C 0.128 3.872 18 H 0.085 0.915 19 N -0.590 5.590 20 C -0.209 4.209 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.924 5.924 24 Si 0.917 3.083 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.221 0.779 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.397 0.603 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.198 -3.051 6.541 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.097 3.903 4 O -0.307 6.307 5 C 0.002 3.998 6 C -0.180 4.180 7 C 0.298 3.702 8 O -0.424 6.424 9 N -0.360 5.360 10 C 0.020 3.980 11 H 0.102 0.898 12 C -0.182 4.182 13 C 0.047 3.953 14 H 0.171 0.829 15 C -0.176 4.176 16 C -0.170 4.170 17 C 0.019 3.981 18 H 0.103 0.897 19 N -0.311 5.311 20 C -0.337 4.337 21 H 0.097 0.903 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.238 0.762 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.231 0.769 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.432 -3.074 7.025 19.964 hybrid contribution 0.492 0.243 0.024 0.550 sum -17.940 -2.830 7.050 19.482 Atomic orbital electron populations 1.24968 0.95890 1.01004 0.97750 1.22607 0.93948 1.00499 1.01979 1.19053 0.84532 1.01634 0.85048 1.87859 1.22024 1.94882 1.25951 1.22178 0.79366 1.02110 0.96165 1.21476 0.93343 1.05481 0.97719 1.20267 0.89558 0.76536 0.83803 1.90710 1.65280 1.49926 1.36520 1.46226 1.08552 1.73057 1.08213 1.22667 0.77060 0.99587 0.98655 0.89831 1.23310 0.99314 1.01273 0.94271 1.23773 0.91103 0.88060 0.92380 0.82857 1.23039 0.98534 1.00614 0.95434 1.22905 0.97709 0.99399 0.96970 1.23196 0.87399 0.92796 0.94756 0.89717 1.46487 1.01283 1.73428 1.09867 1.19061 0.81172 1.35366 0.98150 0.90309 1.24707 0.98099 1.02033 0.96002 1.69433 1.31380 1.51544 1.04837 0.86018 0.84228 0.77947 0.76999 1.21647 1.21692 1.20762 0.76178 0.90636 0.90595 0.92005 0.91902 0.88119 0.88223 0.76894 0.91639 0.92695 0.92659 0.93606 0.93073 0.93040 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.19 -1.86 13.73 -37.12 -0.51 -2.37 16 3 C 0.17 1.55 6.41 34.37 0.22 1.77 16 4 O -0.39 -4.27 10.30 -35.23 -0.36 -4.64 16 5 C 0.08 0.84 5.23 37.16 0.19 1.03 16 6 C -0.14 -1.45 6.07 -27.88 -0.17 -1.62 16 7 C 0.51 7.29 7.83 -10.98 -0.09 7.21 16 8 O -0.55 -9.97 15.64 5.56 0.09 -9.88 16 9 N -0.71 -10.00 3.72 -51.40 -0.19 -10.19 16 10 C 0.13 2.31 3.13 -65.43 -0.21 2.11 16 11 H 0.08 1.74 7.58 -51.93 -0.39 1.34 16 12 C -0.14 -2.65 6.20 -24.24 -0.15 -2.80 16 13 C 0.15 3.41 4.72 -62.80 -0.30 3.11 16 14 H 0.15 3.91 5.52 -51.93 -0.29 3.63 16 15 C -0.14 -2.59 6.44 -24.24 -0.16 -2.75 16 16 C -0.13 -2.35 6.32 -24.24 -0.15 -2.51 16 17 C 0.13 2.64 5.35 -62.80 -0.34 2.31 16 18 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 19 N -0.59 -14.60 2.99 -145.82 -0.44 -15.03 16 20 C -0.21 -5.76 10.59 -15.06 -0.16 -5.91 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.92 -26.07 10.46 55.49 0.58 -25.49 16 24 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.22 0.92 7.80 -54.09 -0.42 0.50 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.40 4.51 7.93 -40.82 -0.32 4.19 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.05 0.85 7.39 -51.93 -0.38 0.47 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.73 7.82 -51.93 -0.41 0.32 16 40 H 0.05 0.77 6.40 -51.93 -0.33 0.44 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -31.91 348.66 -7.74 -39.65 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.32 Total: 5.12 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.33 Total: -1.75 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.05 Total: -50.72 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.28 Total: -14.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.91 -7.74 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109272376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.121 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds