Wall clock time and date at job start Tue Mar 31 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42894 * 109.47366 * 96.22181 * 3 2 1 5 5 C 1.42902 * 114.00165 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47062 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46636 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00233 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99316 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99453 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.55813 * 33.05992 * 10 9 7 12 12 C 1.54854 * 110.62339 * 155.95714 * 10 9 7 13 13 C 1.55844 * 103.44617 * 118.64859 * 12 10 9 14 14 H 1.09005 * 115.56168 * 158.81010 * 13 12 10 15 15 C 1.55841 * 105.06269 * 288.17341 * 13 12 10 16 16 C 1.54854 * 103.44389 * 71.82493 * 15 13 12 17 17 C 1.55841 * 110.76436 * 270.06007 * 10 9 7 18 18 H 1.09001 * 115.56153 * 82.63117 * 17 10 9 19 19 N 1.50237 * 101.05105 * 208.50903 * 17 10 9 20 20 C 1.36938 * 130.83944 * 233.98462 * 19 17 10 21 21 H 1.07996 * 119.99532 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99786 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99654 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46976 * 90.00272 * 24 22 20 26 26 H 1.48494 * 109.47180 * 210.00030 * 24 22 20 27 27 H 1.48497 * 109.47416 * 330.00196 * 24 22 20 28 28 H 4.38444 * 5.44495 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46634 * 336.21950 * 3 2 1 30 30 H 1.08994 * 109.46978 * 216.22404 * 3 2 1 31 31 H 1.08995 * 109.46924 * 60.00257 * 5 4 3 32 32 H 1.09000 * 109.47124 * 300.00066 * 5 4 3 33 33 H 1.08995 * 109.46994 * 60.00358 * 6 5 4 34 34 H 1.09000 * 109.47253 * 300.00045 * 6 5 4 35 35 H 0.96999 * 120.00452 * 0.02562 * 9 7 6 36 36 H 1.08998 * 110.62411 * 237.13824 * 12 10 9 37 37 H 1.08995 * 110.62766 * 0.15689 * 12 10 9 38 38 H 1.09007 * 110.62512 * 190.30943 * 15 13 12 39 39 H 1.08997 * 110.62829 * 313.17320 * 15 13 12 40 40 H 1.09002 * 110.62596 * 241.50557 * 16 15 13 41 41 H 1.09001 * 110.62477 * 118.48789 * 16 15 13 42 42 H 0.97004 * 119.99959 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1469 -1.3393 5 6 4.5468 0.1592 -1.4515 6 6 4.9413 0.3190 -2.9211 7 6 6.4436 0.3325 -3.0393 8 8 7.1310 0.2245 -2.0460 9 7 7.0232 0.4637 -4.2490 10 6 8.4836 0.4763 -4.3640 11 1 8.9328 -0.1657 -3.6063 12 6 8.9229 0.0361 -5.7822 13 6 9.6793 1.2834 -6.3308 14 1 10.3730 1.0905 -7.1491 15 6 8.5687 2.3411 -6.6075 16 6 8.1294 2.7813 -5.1893 17 6 9.0343 1.9296 -4.2489 18 1 9.1600 2.3059 -3.2336 19 7 10.2883 1.8283 -5.0701 20 6 11.5868 2.1372 -4.7637 21 1 11.8334 2.5243 -3.7862 22 6 12.5858 1.9526 -5.7097 23 7 12.2850 1.4813 -6.9011 24 14 14.3572 2.3733 -5.2915 25 1 15.0265 1.1797 -4.7149 26 1 15.0704 2.7936 -6.5242 27 1 14.3827 3.4810 -4.3028 28 1 -1.0500 0.0002 0.0000 29 1 3.0097 -0.9396 0.4144 30 1 3.0089 0.8298 0.6073 31 1 4.9496 -0.7780 -1.0674 32 1 4.9496 0.9914 -0.8742 33 1 4.5385 1.2560 -3.3056 34 1 4.5386 -0.5136 -3.4980 35 1 6.4734 0.5497 -5.0435 36 1 9.5900 -0.8242 -5.7277 37 1 8.0542 -0.1889 -6.4007 38 1 8.9737 3.1866 -7.1637 39 1 7.7359 1.8911 -7.1478 40 1 7.0774 2.5490 -5.0238 41 1 8.3165 3.8450 -5.0423 42 1 12.9832 1.3520 -7.5620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109272376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:24 Heat of formation + Delta-G solvation = 0.117784 kcal Electronic energy + Delta-G solvation = -23142.095667 eV Core-core repulsion = 19703.518903 eV Total energy + Delta-G solvation = -3438.576764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48300 -39.99297 -38.92350 -35.44647 -34.43699 -34.19583 -32.50783 -31.00074 -30.66161 -29.20225 -27.86202 -26.19475 -24.61732 -22.78342 -21.76425 -21.11174 -20.13412 -19.40673 -18.90705 -18.36255 -17.42937 -17.11707 -16.80216 -16.74062 -16.33987 -15.95001 -15.84063 -15.54724 -14.75542 -14.38530 -14.05746 -13.88555 -13.56667 -13.45527 -13.17160 -12.89423 -12.78427 -12.63247 -12.59628 -12.43543 -12.35864 -11.99985 -11.89092 -11.56231 -11.52786 -11.43304 -11.18919 -11.04287 -10.81818 -10.76533 -10.55591 -9.96222 -8.85447 -7.79804 -5.19009 1.45349 1.46475 1.47129 1.55198 1.68861 1.83515 2.18957 2.49856 3.00610 3.33559 3.52186 3.64425 3.77441 3.96647 4.07482 4.13400 4.16265 4.26684 4.33824 4.44020 4.45688 4.48720 4.58493 4.63097 4.73130 4.82618 4.84576 4.88730 4.99649 5.04431 5.09232 5.16745 5.26258 5.34408 5.47970 5.56339 5.77456 5.90259 6.07998 6.28277 6.60871 6.66196 7.05653 7.34683 7.69208 8.55190 9.26920 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037205 B = 0.002784 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.405243 B =10054.223791 C =10382.189659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.398 6.398 5 C 0.080 3.920 6 C -0.127 4.127 7 C 0.514 3.486 8 O -0.590 6.590 9 N -0.697 5.697 10 C 0.146 3.854 11 H 0.053 0.947 12 C -0.127 4.127 13 C 0.136 3.864 14 H 0.119 0.881 15 C -0.125 4.125 16 C -0.116 4.116 17 C 0.117 3.883 18 H 0.066 0.934 19 N -0.620 5.620 20 C -0.223 4.223 21 H 0.071 0.929 22 C -0.066 4.066 23 N -0.944 5.944 24 Si 0.976 3.024 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.276 1.276 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.416 0.584 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.033 0.967 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.256 -3.137 6.290 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.318 6.318 5 C 0.003 3.997 6 C -0.167 4.167 7 C 0.302 3.698 8 O -0.471 6.471 9 N -0.349 5.349 10 C 0.038 3.962 11 H 0.071 0.929 12 C -0.167 4.167 13 C 0.031 3.969 14 H 0.137 0.863 15 C -0.165 4.165 16 C -0.155 4.155 17 C 0.009 3.991 18 H 0.085 0.915 19 N -0.342 5.342 20 C -0.353 4.353 21 H 0.089 0.911 22 C -0.258 4.258 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.201 1.201 28 H 0.270 0.730 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.255 0.745 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.557 -3.158 6.766 22.813 hybrid contribution 1.354 0.255 0.178 1.389 sum -20.202 -2.903 6.943 21.559 Atomic orbital electron populations 1.25862 0.96797 0.99277 0.95841 1.23070 0.94823 1.02213 1.03784 1.19220 0.84660 1.02646 0.84360 1.87817 1.21774 1.94977 1.27237 1.22109 0.79483 1.01607 0.96505 1.21414 0.89728 1.07684 0.97858 1.20954 0.91123 0.74931 0.82827 1.90708 1.66692 1.51646 1.38056 1.45955 1.06631 1.72983 1.09358 1.22064 0.79535 0.97089 0.97466 0.92909 1.23137 1.00038 0.98754 0.94742 1.23700 0.91754 0.90613 0.90875 0.86327 1.22937 0.98555 0.98935 0.96028 1.22813 0.99131 0.98196 0.95350 1.23355 0.86755 0.94886 0.94121 0.91545 1.46757 1.01480 1.74105 1.11824 1.19292 0.83142 1.34922 0.97896 0.91135 1.25427 1.01408 1.02796 0.96199 1.69668 1.31812 1.52546 1.05304 0.85104 0.80130 0.77628 0.76623 1.21665 1.21763 1.20134 0.72969 0.89593 0.89670 0.92558 0.92651 0.85836 0.85750 0.74535 0.93762 0.88400 0.94773 0.89264 0.89093 0.94013 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 19.25 74.32 1.43 -0.79 16 2 C -0.24 -4.32 13.73 31.13 0.43 -3.89 16 3 C 0.17 2.80 6.41 70.18 0.45 3.25 16 4 O -0.40 -8.02 10.30 -148.98 -1.53 -9.56 16 5 C 0.08 1.57 5.23 71.98 0.38 1.94 16 6 C -0.13 -2.19 6.07 29.85 0.18 -2.01 16 7 C 0.51 13.40 7.83 87.66 0.69 14.09 16 8 O -0.59 -21.22 15.64 -3.01 -0.05 -21.27 16 9 N -0.70 -17.46 3.72 -434.91 -1.62 -19.08 16 10 C 0.15 5.20 3.13 46.61 0.15 5.34 16 11 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 12 C -0.13 -4.57 6.20 32.21 0.20 -4.37 16 13 C 0.14 6.05 4.72 46.23 0.22 6.27 16 14 H 0.12 6.21 5.52 -2.38 -0.01 6.19 16 15 C -0.13 -4.48 6.44 32.21 0.21 -4.27 16 16 C -0.12 -3.91 6.32 32.21 0.20 -3.71 16 17 C 0.12 4.82 5.35 46.23 0.25 5.07 16 18 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 19 N -0.62 -31.33 2.99 -615.25 -1.84 -33.17 16 20 C -0.22 -12.69 10.59 84.03 0.89 -11.80 16 21 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 23 N -0.94 -54.92 10.46 21.65 0.23 -54.69 16 24 Si 0.98 46.37 29.55 68.60 2.03 48.39 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H 0.25 1.25 7.80 -4.42 -0.03 1.22 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 32 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.42 7.31 7.93 -92.71 -0.73 6.57 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 2.65 7.39 -2.39 -0.02 2.63 16 38 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.09 2.41 7.82 -2.39 -0.02 2.39 16 40 H 0.09 2.34 6.40 -2.39 -0.02 2.33 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -72.94 348.66 3.63 -69.31 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.28 Total: 18.19 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.13 Total: 1.87 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.23 Total: -106.93 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.58 Total: -30.83 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -72.94 3.63 -69.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109272376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.426 kcal (2) G-P(sol) polarization free energy of solvation -72.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds