Wall clock time and date at job start Tue Mar 31 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42909 * 109.46657 * 239.37111 * 3 2 1 5 5 C 1.42903 * 113.99516 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47382 * 30.00095 * 5 4 3 7 7 C 1.53002 * 109.46923 * 270.00121 * 5 4 3 8 8 C 1.50701 * 109.46878 * 150.00028 * 5 4 3 9 9 O 1.21279 * 120.00074 * 5.00198 * 8 5 4 10 10 N 1.34778 * 119.99965 * 184.99637 * 8 5 4 11 11 C 1.46497 * 119.99736 * 179.97438 * 10 8 5 12 12 H 1.09001 * 110.56089 * 34.30879 * 11 10 8 13 13 C 1.54856 * 110.62873 * 271.39895 * 11 10 8 14 14 C 1.55837 * 103.44467 * 241.51273 * 13 11 10 15 15 H 1.09000 * 115.56047 * 158.81140 * 14 13 11 16 16 C 1.55839 * 105.06840 * 287.42358 * 14 13 11 17 17 C 1.54849 * 103.44858 * 71.82570 * 16 14 13 18 18 C 1.55848 * 110.62148 * 157.20243 * 11 10 8 19 19 H 1.08995 * 115.56586 * 318.92452 * 18 11 10 20 20 N 1.50236 * 101.05513 * 32.93881 * 14 13 11 21 21 C 1.36939 * 130.83910 * 126.00595 * 20 14 13 22 22 H 1.07999 * 119.99805 * 180.02562 * 21 20 14 23 23 C 1.38811 * 120.00318 * 0.03235 * 21 20 14 24 24 N 1.31619 * 119.99716 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00012 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47277 * 90.00256 * 25 23 21 27 27 H 1.48506 * 109.46718 * 209.99913 * 25 23 21 28 28 H 1.48501 * 109.47143 * 329.99508 * 25 23 21 29 29 H 4.38453 * 5.44506 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47040 * 119.37797 * 3 2 1 31 31 H 1.08994 * 109.47262 * 359.37096 * 3 2 1 32 32 H 1.09000 * 109.46986 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47075 * 299.99607 * 7 5 4 34 34 H 1.08996 * 109.47407 * 60.00564 * 7 5 4 35 35 H 0.97002 * 119.99484 * 0.02562 * 10 8 5 36 36 H 1.09002 * 110.62266 * 0.02562 * 13 11 10 37 37 H 1.09001 * 110.62284 * 123.02219 * 13 11 10 38 38 H 1.09005 * 110.63057 * 190.32009 * 16 14 13 39 39 H 1.09011 * 110.62451 * 313.33753 * 16 14 13 40 40 H 1.08995 * 110.62823 * 118.49364 * 17 16 14 41 41 H 1.08998 * 110.62708 * 241.35877 * 17 16 14 42 42 H 0.96998 * 119.99829 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.6873 1.1594 5 6 4.5465 0.7460 1.2562 6 1 4.9788 0.7512 0.2556 7 6 5.0560 -0.4745 2.0255 8 6 4.9492 2.0026 1.9840 9 8 4.1002 2.7262 2.4600 10 7 6.2528 2.3224 2.1060 11 6 6.6442 3.5443 2.8130 12 1 5.9609 3.7446 3.6383 13 6 6.6907 4.7471 1.8389 14 6 8.1802 5.2016 1.8952 15 1 8.5259 5.7870 1.0432 16 6 8.3442 5.8806 3.2883 17 6 8.2935 4.6902 4.2773 18 6 8.1106 3.4341 3.3290 19 1 8.3899 2.4682 3.7497 20 7 8.8745 3.8871 2.1119 21 6 9.8895 3.2852 1.4170 22 1 10.2615 2.3212 1.7313 23 6 10.4402 3.9140 0.3088 24 7 9.9864 5.0885 -0.0745 25 14 11.8251 3.0931 -0.6386 26 1 11.2536 2.2440 -1.7145 27 1 12.6978 4.1334 -1.2400 28 1 12.6250 2.2497 0.2855 29 1 -1.0502 -0.0003 -0.0001 30 1 3.0091 0.5049 -0.8955 31 1 3.0098 -1.0267 0.0113 32 1 6.1426 -0.4296 2.0997 33 1 4.6238 -0.4797 3.0261 34 1 4.7648 -1.3834 1.4990 35 1 6.9317 1.7437 1.7250 36 1 6.4221 4.4345 0.8298 37 1 6.0324 5.5451 2.1825 38 1 9.3033 6.3943 3.3546 39 1 7.5231 6.5722 3.4774 40 1 9.2273 4.6135 4.8341 41 1 7.4489 4.7928 4.9586 42 1 10.3710 5.5278 -0.8491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110546118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:50 Heat of formation + Delta-G solvation = 21.404836 kcal Electronic energy + Delta-G solvation = -23810.282878 eV Core-core repulsion = 20372.629189 eV Total energy + Delta-G solvation = -3437.653688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.95687 -38.79234 -37.47347 -33.85409 -33.55246 -32.57098 -31.31261 -29.15032 -28.69998 -27.63271 -27.25365 -24.42143 -23.94655 -21.32803 -19.88756 -19.81373 -18.81589 -18.62781 -17.10221 -16.92936 -16.86364 -15.88700 -15.42673 -14.94986 -14.74148 -14.43440 -13.93462 -13.85819 -13.45892 -13.09555 -12.86328 -12.59484 -12.31798 -12.01138 -11.84210 -11.50722 -11.22574 -11.13388 -10.97175 -10.93058 -10.82438 -10.70200 -10.51497 -10.36117 -10.12756 -9.92699 -9.87160 -9.51832 -9.23599 -9.07695 -8.97749 -8.45452 -6.98093 -5.77659 -3.17131 2.25898 2.62643 2.94316 3.32577 3.32815 3.38181 3.40628 3.94979 4.36970 4.43026 4.75793 4.91192 4.99830 5.03266 5.11226 5.21269 5.32089 5.48827 5.56851 5.61226 5.71069 5.71250 5.81148 5.98151 6.05258 6.10434 6.13982 6.30337 6.41308 6.49536 6.58933 6.73736 6.82502 6.86514 6.96078 7.12458 7.32542 7.38564 7.43670 7.76600 7.98445 8.14385 8.62338 9.03723 9.66838 10.48422 11.31038 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.004204 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.287778 B = 6659.106337 C = 7540.517531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.188 4.188 3 C 0.168 3.832 4 O -0.351 6.351 5 C 0.070 3.930 6 H 0.089 0.911 7 C -0.170 4.170 8 C 0.511 3.489 9 O -0.531 6.531 10 N -0.703 5.703 11 C 0.130 3.870 12 H 0.079 0.921 13 C -0.143 4.143 14 C 0.154 3.846 15 H 0.152 0.848 16 C -0.139 4.139 17 C -0.128 4.128 18 C 0.125 3.875 19 H 0.090 0.910 20 N -0.590 5.590 21 C -0.215 4.215 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.222 0.778 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 -9.152 1.927 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.188 4.188 3 C 0.092 3.908 4 O -0.270 6.270 5 C 0.008 3.992 6 H 0.107 0.893 7 C -0.227 4.227 8 C 0.295 3.705 9 O -0.407 6.407 10 N -0.354 5.354 11 C 0.024 3.976 12 H 0.097 0.903 13 C -0.183 4.183 14 C 0.048 3.952 15 H 0.169 0.831 16 C -0.179 4.179 17 C -0.169 4.169 18 C 0.016 3.984 19 H 0.108 0.892 20 N -0.310 5.310 21 C -0.343 4.343 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.566 5.566 25 Si 0.746 3.254 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 H 0.238 0.762 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.237 0.763 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.411 -8.558 2.161 13.649 hybrid contribution 0.982 -0.794 -0.884 1.541 sum -9.429 -9.352 1.277 13.341 Atomic orbital electron populations 1.24941 0.95856 1.00156 0.98526 1.22484 0.93839 1.00852 1.01605 1.19190 0.84970 0.97287 0.89332 1.88114 1.19363 1.76889 1.42607 1.21973 0.82417 0.94560 1.00218 0.89303 1.22231 1.02090 0.96677 1.01731 1.20175 0.83199 0.86313 0.80806 1.90689 1.50226 1.51955 1.47845 1.45943 1.06186 1.26207 1.57081 1.22637 0.96964 0.83703 0.94270 0.90331 1.23460 1.00012 0.96364 0.98482 1.23711 0.87414 0.87662 0.96443 0.83118 1.23043 0.99896 0.96453 0.98495 1.23301 0.99821 0.96723 0.97007 1.23722 0.89365 0.95893 0.89425 0.89193 1.46589 1.38159 1.18433 1.27845 1.18998 1.08247 1.01051 1.06019 0.90384 1.24710 1.00087 0.97011 0.98776 1.69470 1.44090 1.15397 1.27657 0.86070 0.81501 0.78091 0.79769 1.21727 1.21710 1.20800 0.76159 0.90561 0.90669 0.90473 0.91103 0.91404 0.76333 0.92273 0.92815 0.92637 0.93246 0.92531 0.92939 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 19.25 29.55 0.57 -1.27 16 2 C -0.19 -2.29 13.73 -37.12 -0.51 -2.80 16 3 C 0.17 1.88 6.22 34.37 0.21 2.10 16 4 O -0.35 -5.22 9.48 -55.09 -0.52 -5.74 16 5 C 0.07 0.92 3.13 -27.88 -0.09 0.83 16 6 H 0.09 0.98 7.79 -51.93 -0.40 0.58 16 7 C -0.17 -1.75 9.48 37.16 0.35 -1.40 16 8 C 0.51 8.77 7.18 -10.98 -0.08 8.69 16 9 O -0.53 -11.33 16.19 -14.30 -0.23 -11.56 16 10 N -0.70 -11.78 5.05 -51.39 -0.26 -12.04 16 11 C 0.13 2.41 2.75 -65.43 -0.18 2.23 16 12 H 0.08 1.48 7.32 -51.93 -0.38 1.10 16 13 C -0.14 -2.92 6.23 -24.24 -0.15 -3.07 16 14 C 0.15 3.47 4.67 -62.81 -0.29 3.17 16 15 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16 16 C -0.14 -2.74 6.45 -24.24 -0.16 -2.89 16 17 C -0.13 -2.30 6.53 -22.75 -0.15 -2.45 16 18 C 0.12 2.36 5.20 -61.06 -0.32 2.04 16 19 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 20 N -0.59 -13.59 3.01 -143.91 -0.43 -14.02 16 21 C -0.22 -5.46 10.59 -15.06 -0.16 -5.62 16 22 H 0.08 1.90 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -25.29 10.47 55.49 0.58 -24.71 16 25 Si 0.91 20.88 29.55 -169.99 -5.02 15.85 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.22 1.38 7.80 -54.08 -0.42 0.96 16 30 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 32 H 0.08 0.72 7.92 -51.93 -0.41 0.30 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 35 H 0.40 6.28 8.42 -40.82 -0.34 5.93 16 36 H 0.06 1.31 7.98 -51.93 -0.41 0.89 16 37 H 0.05 1.04 7.80 -51.93 -0.40 0.64 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.87 7.81 -51.92 -0.41 0.47 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.83 7.86 -51.93 -0.41 0.43 16 42 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 350.70 15.07 5.29 5.29 Total: -1.00 -31.78 350.70 -8.00 -39.79 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.35 Total: 7.94 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.04 Total: -0.79 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.11 Total: -50.77 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.75 Total: -17.30 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.78 -8.00 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110546118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.191 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds