Wall clock time and date at job start Tue Mar 31 2020 03:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42909 * 109.46657 * 239.37111 * 3 2 1 5 5 C 1.42903 * 113.99516 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47382 * 30.00095 * 5 4 3 7 7 C 1.53002 * 109.46923 * 270.00121 * 5 4 3 8 8 C 1.50701 * 109.46878 * 150.00028 * 5 4 3 9 9 O 1.21279 * 120.00074 * 5.00198 * 8 5 4 10 10 N 1.34778 * 119.99965 * 184.99637 * 8 5 4 11 11 C 1.46497 * 119.99736 * 179.97438 * 10 8 5 12 12 H 1.09001 * 110.56089 * 34.30879 * 11 10 8 13 13 C 1.54856 * 110.62873 * 271.39895 * 11 10 8 14 14 C 1.55837 * 103.44467 * 241.51273 * 13 11 10 15 15 H 1.09000 * 115.56047 * 158.81140 * 14 13 11 16 16 C 1.55839 * 105.06840 * 287.42358 * 14 13 11 17 17 C 1.54849 * 103.44858 * 71.82570 * 16 14 13 18 18 C 1.55848 * 110.62148 * 157.20243 * 11 10 8 19 19 H 1.08995 * 115.56586 * 318.92452 * 18 11 10 20 20 N 1.50236 * 101.05513 * 32.93881 * 14 13 11 21 21 C 1.36939 * 130.83910 * 126.00595 * 20 14 13 22 22 H 1.07999 * 119.99805 * 180.02562 * 21 20 14 23 23 C 1.38811 * 120.00318 * 0.03235 * 21 20 14 24 24 N 1.31619 * 119.99716 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00012 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47277 * 90.00256 * 25 23 21 27 27 H 1.48506 * 109.46718 * 209.99913 * 25 23 21 28 28 H 1.48501 * 109.47143 * 329.99508 * 25 23 21 29 29 H 4.38453 * 5.44506 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47040 * 119.37797 * 3 2 1 31 31 H 1.08994 * 109.47262 * 359.37096 * 3 2 1 32 32 H 1.09000 * 109.46986 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47075 * 299.99607 * 7 5 4 34 34 H 1.08996 * 109.47407 * 60.00564 * 7 5 4 35 35 H 0.97002 * 119.99484 * 0.02562 * 10 8 5 36 36 H 1.09002 * 110.62266 * 0.02562 * 13 11 10 37 37 H 1.09001 * 110.62284 * 123.02219 * 13 11 10 38 38 H 1.09005 * 110.63057 * 190.32009 * 16 14 13 39 39 H 1.09011 * 110.62451 * 313.33753 * 16 14 13 40 40 H 1.08995 * 110.62823 * 118.49364 * 17 16 14 41 41 H 1.08998 * 110.62708 * 241.35877 * 17 16 14 42 42 H 0.96998 * 119.99829 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.6873 1.1594 5 6 4.5465 0.7460 1.2562 6 1 4.9788 0.7512 0.2556 7 6 5.0560 -0.4745 2.0255 8 6 4.9492 2.0026 1.9840 9 8 4.1002 2.7262 2.4600 10 7 6.2528 2.3224 2.1060 11 6 6.6442 3.5443 2.8130 12 1 5.9609 3.7446 3.6383 13 6 6.6907 4.7471 1.8389 14 6 8.1802 5.2016 1.8952 15 1 8.5259 5.7870 1.0432 16 6 8.3442 5.8806 3.2883 17 6 8.2935 4.6902 4.2773 18 6 8.1106 3.4341 3.3290 19 1 8.3899 2.4682 3.7497 20 7 8.8745 3.8871 2.1119 21 6 9.8895 3.2852 1.4170 22 1 10.2615 2.3212 1.7313 23 6 10.4402 3.9140 0.3088 24 7 9.9864 5.0885 -0.0745 25 14 11.8251 3.0931 -0.6386 26 1 11.2536 2.2440 -1.7145 27 1 12.6978 4.1334 -1.2400 28 1 12.6250 2.2497 0.2855 29 1 -1.0502 -0.0003 -0.0001 30 1 3.0091 0.5049 -0.8955 31 1 3.0098 -1.0267 0.0113 32 1 6.1426 -0.4296 2.0997 33 1 4.6238 -0.4797 3.0261 34 1 4.7648 -1.3834 1.4990 35 1 6.9317 1.7437 1.7250 36 1 6.4221 4.4345 0.8298 37 1 6.0324 5.5451 2.1825 38 1 9.3033 6.3943 3.3546 39 1 7.5231 6.5722 3.4774 40 1 9.2273 4.6135 4.8341 41 1 7.4489 4.7928 4.9586 42 1 10.3710 5.5278 -0.8491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110546118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:49 Heat of formation + Delta-G solvation = 1.935222 kcal Electronic energy + Delta-G solvation = -23811.127143 eV Core-core repulsion = 20372.629189 eV Total energy + Delta-G solvation = -3438.497954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35918 -40.18322 -38.68356 -35.33910 -34.52649 -34.29632 -32.32938 -30.96296 -30.25610 -29.16074 -28.08530 -26.15166 -25.17858 -22.74897 -21.53118 -21.21141 -20.31888 -19.61033 -18.80318 -18.15683 -17.96305 -17.09578 -16.76502 -16.50653 -16.07657 -15.80112 -15.49379 -15.18743 -14.85134 -14.35007 -14.01682 -13.68707 -13.64387 -13.51628 -13.17341 -12.88409 -12.84646 -12.74078 -12.68203 -12.43029 -12.08726 -11.93881 -11.87205 -11.72000 -11.66900 -11.57165 -11.15520 -10.94008 -10.90987 -10.76172 -10.38540 -9.94817 -8.85089 -7.72706 -5.12960 1.36301 1.51907 1.53201 1.60950 1.61794 1.80634 2.17920 2.52882 3.04122 3.40267 3.46111 3.57868 3.72618 3.92803 4.00528 4.04423 4.14254 4.23680 4.24771 4.44175 4.47407 4.48791 4.63365 4.70930 4.71398 4.80173 4.83975 4.92396 5.00216 5.09891 5.17973 5.19375 5.20762 5.39489 5.53805 5.60975 5.70827 5.91413 5.99704 6.28853 6.58433 6.65288 7.08176 7.28559 7.75302 8.61204 9.34561 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.004204 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.287778 B = 6659.106337 C = 7540.517531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.240 4.240 3 C 0.162 3.838 4 O -0.384 6.384 5 C 0.073 3.927 6 H 0.112 0.888 7 C -0.162 4.162 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.697 5.697 11 C 0.140 3.860 12 H 0.082 0.918 13 C -0.134 4.134 14 C 0.141 3.859 15 H 0.114 0.886 16 C -0.134 4.134 17 C -0.120 4.120 18 C 0.128 3.872 19 H 0.111 0.889 20 N -0.607 5.607 21 C -0.212 4.212 22 H 0.089 0.911 23 C -0.068 4.068 24 N -0.949 5.949 25 Si 0.975 3.025 26 H -0.289 1.289 27 H -0.305 1.305 28 H -0.270 1.270 29 H 0.255 0.745 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.409 0.591 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 -11.323 2.741 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.240 4.240 3 C 0.087 3.913 4 O -0.304 6.304 5 C 0.013 3.987 6 H 0.129 0.871 7 C -0.220 4.220 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.348 5.348 11 C 0.033 3.967 12 H 0.100 0.900 13 C -0.174 4.174 14 C 0.034 3.966 15 H 0.132 0.868 16 C -0.173 4.173 17 C -0.160 4.160 18 C 0.021 3.979 19 H 0.129 0.871 20 N -0.329 5.329 21 C -0.341 4.341 22 H 0.107 0.893 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.805 3.195 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.195 1.195 29 H 0.271 0.729 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.245 0.755 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.876 -10.771 2.996 15.597 hybrid contribution 1.024 -0.097 -1.126 1.525 sum -9.852 -10.867 1.869 14.787 Atomic orbital electron populations 1.25883 0.96862 0.98507 0.96689 1.23113 0.94997 1.02512 1.03344 1.19447 0.84821 0.98601 0.88422 1.88060 1.20097 1.77853 1.44342 1.22027 0.82279 0.93322 1.01106 0.87078 1.22216 1.02622 0.96209 1.00926 1.20963 0.82519 0.87115 0.80033 1.90659 1.51340 1.53791 1.49942 1.45870 1.06579 1.25613 1.56732 1.22433 0.96818 0.83655 0.93773 0.90040 1.23321 0.98761 0.97599 0.97744 1.23533 0.88356 0.87869 0.96820 0.86831 1.22948 0.99760 0.97336 0.97254 1.23262 1.01258 0.94866 0.96603 1.23929 0.88542 0.97259 0.88166 0.87137 1.46760 1.38125 1.18826 1.29145 1.19385 1.07961 1.01168 1.05568 0.89281 1.25441 1.02598 0.97774 1.00268 1.69732 1.45413 1.16835 1.27930 0.85119 0.78986 0.76838 0.78594 1.21578 1.23213 1.19526 0.72886 0.89700 0.87863 0.89236 0.92288 0.88768 0.75471 0.94752 0.92072 0.94284 0.91346 0.92097 0.90193 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 19.25 74.32 1.43 -1.67 16 2 C -0.24 -5.60 13.73 31.13 0.43 -5.18 16 3 C 0.16 3.41 6.22 70.18 0.44 3.84 16 4 O -0.38 -11.05 9.48 -129.99 -1.23 -12.28 16 5 C 0.07 1.81 3.13 29.85 0.09 1.91 16 6 H 0.11 2.21 7.79 -2.39 -0.02 2.19 16 7 C -0.16 -2.92 9.48 71.98 0.68 -2.23 16 8 C 0.51 16.98 7.18 87.66 0.63 17.61 16 9 O -0.58 -24.64 16.19 15.96 0.26 -24.38 16 10 N -0.70 -22.46 5.05 -434.91 -2.19 -24.66 16 11 C 0.14 4.99 2.75 46.61 0.13 5.12 16 12 H 0.08 2.93 7.32 -2.39 -0.02 2.91 16 13 C -0.13 -5.49 6.23 32.21 0.20 -5.29 16 14 C 0.14 6.41 4.67 46.22 0.22 6.62 16 15 H 0.11 6.14 5.52 -2.39 -0.01 6.12 16 16 C -0.13 -5.14 6.45 32.21 0.21 -4.93 16 17 C -0.12 -4.00 6.53 33.17 0.22 -3.79 16 18 C 0.13 4.59 5.20 47.11 0.24 4.83 16 19 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 20 N -0.61 -27.62 3.01 -609.22 -1.83 -29.45 16 21 C -0.21 -10.61 10.59 84.03 0.89 -9.72 16 22 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 24 N -0.95 -53.87 10.47 21.65 0.23 -53.65 16 25 Si 0.97 43.12 29.55 68.60 2.03 45.15 16 26 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.25 2.49 7.80 -4.41 -0.03 2.45 16 30 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 31 H 0.10 1.50 7.87 -2.39 -0.02 1.48 16 32 H 0.09 1.38 7.92 -2.39 -0.02 1.36 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.21 7.87 -2.39 -0.02 1.19 16 35 H 0.41 12.04 8.42 -92.71 -0.78 11.26 16 36 H 0.03 1.54 7.98 -2.39 -0.02 1.52 16 37 H 0.06 2.37 7.80 -2.39 -0.02 2.35 16 38 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.07 2.33 7.81 -2.38 -0.02 2.31 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 2.26 7.86 -2.39 -0.02 2.24 16 42 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -70.53 350.70 3.76 -66.77 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.23 Total: 28.51 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.27 Total: 3.99 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.80 Total: -107.75 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.97 Total: -36.66 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.53 3.76 -66.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110546118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.707 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds