Wall clock time and date at job start Tue Mar 31 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47016 * 10.25934 * 3 2 1 5 5 C 1.42900 * 113.99691 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46888 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47137 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99699 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00134 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00186 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.55361 * 36.44585 * 10 9 7 12 12 C 1.54856 * 110.62489 * 273.55143 * 10 9 7 13 13 C 1.55847 * 103.44128 * 241.50798 * 12 10 9 14 14 H 1.08994 * 115.56232 * 159.56723 * 13 12 10 15 15 C 1.55849 * 105.06502 * 288.17535 * 13 12 10 16 16 C 1.54856 * 103.44287 * 71.82310 * 15 13 12 17 17 C 1.55838 * 103.44592 * 0.02562 * 16 15 13 18 18 H 1.09000 * 115.55987 * 159.56601 * 17 16 15 19 19 N 1.50235 * 101.05225 * 32.93598 * 17 16 15 20 20 C 1.36941 * 130.83772 * 126.01333 * 19 17 16 21 21 H 1.08004 * 119.99843 * 0.05024 * 20 19 17 22 22 C 1.38805 * 119.99777 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00498 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46820 * 59.99878 * 24 22 20 26 26 H 1.48502 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47202 * 300.00145 * 24 22 20 28 28 H 4.38441 * 5.44450 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.08995 * 109.47792 * 300.00114 * 5 4 3 32 32 H 1.09008 * 109.46914 * 60.00726 * 5 4 3 33 33 H 1.09000 * 109.47760 * 300.00182 * 6 5 4 34 34 H 1.08999 * 109.47329 * 60.00790 * 6 5 4 35 35 H 0.96999 * 120.00029 * 0.02562 * 9 7 6 36 36 H 1.08997 * 110.62932 * 359.97438 * 12 10 9 37 37 H 1.09000 * 110.62870 * 123.01874 * 12 10 9 38 38 H 1.08996 * 110.62747 * 190.31226 * 15 13 12 39 39 H 1.08995 * 110.62412 * 313.33870 * 15 13 12 40 40 H 1.08995 * 110.62380 * 118.49369 * 16 15 13 41 41 H 1.09004 * 110.62576 * 241.35288 * 16 15 13 42 42 H 0.96998 * 120.00420 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3249 -0.2400 5 6 4.5475 -1.4351 -0.2606 6 6 4.9426 -2.8895 -0.5245 7 6 6.4450 -3.0059 -0.5457 8 8 7.1320 -2.0224 -0.3677 9 7 7.0252 -4.2027 -0.7633 10 6 8.4857 -4.3158 -0.7845 11 1 8.9319 -3.6485 -0.0472 12 6 9.0360 -4.0113 -2.1996 13 6 9.7337 -5.3427 -2.6112 14 1 9.8885 -5.4813 -3.6812 15 6 11.0178 -5.4159 -1.7311 16 6 10.4675 -5.7203 -0.3160 17 6 8.9260 -5.7902 -0.5340 18 1 8.3661 -6.3242 0.2338 19 7 8.8571 -6.3523 -1.9255 20 6 8.1983 -7.4474 -2.4173 21 1 7.6056 -8.0628 -1.7566 22 6 8.2918 -7.7663 -3.7650 23 7 9.0133 -7.0158 -4.5704 24 14 7.3937 -9.2606 -4.4357 25 1 5.9350 -9.1067 -4.2038 26 1 7.6528 -9.3810 -5.8930 27 1 7.8788 -10.4816 -3.7437 28 1 -1.0498 -0.0004 0.0001 29 1 3.0090 0.6649 -0.7843 30 1 3.0092 0.3479 0.9672 31 1 4.9497 -0.8007 -1.0504 32 1 4.9504 -1.1175 0.7012 33 1 4.5405 -3.5243 0.2650 34 1 4.5398 -3.2067 -1.4864 35 1 6.4757 -4.9891 -0.9068 36 1 8.2222 -3.7766 -2.8857 37 1 9.7572 -3.1949 -2.1637 38 1 11.6705 -6.2202 -2.0704 39 1 11.5450 -4.4620 -1.7410 40 1 10.8473 -6.6755 0.0464 41 1 10.7242 -4.9187 0.3765 42 1 9.0783 -7.2384 -5.5122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110553280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:29 Heat of formation + Delta-G solvation = 14.897362 kcal Electronic energy + Delta-G solvation = -23197.311540 eV Core-core repulsion = 19759.375666 eV Total energy + Delta-G solvation = -3437.935874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.87284 -38.69142 -37.94080 -33.80069 -33.67265 -32.55443 -31.52659 -29.13395 -28.84541 -27.86889 -26.99347 -24.30312 -23.64525 -21.27004 -19.89934 -19.69912 -18.76935 -18.53981 -17.31004 -17.03335 -16.52498 -15.90581 -15.84667 -15.11163 -14.96249 -14.77968 -14.00523 -13.89402 -13.49451 -13.26216 -12.94577 -12.58992 -12.07866 -11.89846 -11.72860 -11.57354 -11.22406 -11.13434 -10.96133 -10.89674 -10.79128 -10.66604 -10.52762 -10.37378 -10.13316 -9.94927 -9.75748 -9.72282 -9.25870 -9.15732 -8.97938 -8.47178 -6.97337 -5.76490 -3.15752 2.21930 2.52999 2.93646 3.35537 3.36356 3.40201 3.41644 3.90039 4.37115 4.39463 4.82020 4.97524 5.00803 5.10371 5.14289 5.23631 5.33792 5.49367 5.62065 5.63603 5.67519 5.74118 5.79321 5.85987 6.03980 6.09804 6.13542 6.29744 6.41102 6.48008 6.59181 6.73159 6.81736 6.91486 6.93849 7.10389 7.28525 7.31327 7.44898 7.77468 7.96733 8.13618 8.58350 9.04996 9.68362 10.49374 11.32625 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.003505 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.283778 B = 7987.012784 C = 9225.641584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.190 4.190 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.080 3.920 6 C -0.141 4.141 7 C 0.515 3.485 8 O -0.557 6.557 9 N -0.703 5.703 10 C 0.129 3.871 11 H 0.077 0.923 12 C -0.142 4.142 13 C 0.156 3.844 14 H 0.151 0.849 15 C -0.139 4.139 16 C -0.128 4.128 17 C 0.126 3.874 18 H 0.088 0.912 19 N -0.589 5.589 20 C -0.217 4.217 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.915 3.085 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.221 0.779 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.404 0.596 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.138 10.189 8.816 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.097 3.903 4 O -0.306 6.306 5 C 0.004 3.996 6 C -0.181 4.181 7 C 0.300 3.700 8 O -0.436 6.436 9 N -0.352 5.352 10 C 0.022 3.978 11 H 0.095 0.905 12 C -0.183 4.183 13 C 0.049 3.951 14 H 0.168 0.832 15 C -0.179 4.179 16 C -0.168 4.168 17 C 0.017 3.983 18 H 0.106 0.894 19 N -0.310 5.310 20 C -0.345 4.345 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.746 3.254 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 H 0.238 0.762 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.238 0.762 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.834 10.486 8.651 15.690 hybrid contribution -0.750 -0.966 -0.387 1.283 sum -8.584 9.520 8.265 15.252 Atomic orbital electron populations 1.24957 0.95886 0.97850 1.00948 1.22612 0.93963 1.01921 1.00513 1.19051 0.84537 0.85489 1.01193 1.87879 1.22066 1.27247 1.93455 1.22168 0.79305 0.96388 1.01772 1.21470 0.93440 0.97676 1.05519 1.20240 0.89566 0.83578 0.76586 1.90667 1.65401 1.36799 1.50741 1.46002 1.08552 1.09810 1.70854 1.22656 0.78441 0.98663 0.98003 0.90458 1.23455 1.00021 0.99369 0.95444 1.23699 0.86646 0.84748 0.99990 0.83216 1.23072 0.99604 0.99239 0.95968 1.22884 0.96851 0.99894 0.97194 1.23142 0.94560 0.90839 0.89736 0.89405 1.46500 1.54962 1.27992 1.01558 1.18955 1.22437 1.00836 0.92240 0.90432 1.24703 1.00569 0.99263 0.95955 1.69479 1.43651 1.39317 1.04250 0.86146 0.79152 0.82193 0.77926 1.21243 1.21619 1.21286 0.76185 0.90643 0.90699 0.92010 0.92102 0.88247 0.88003 0.76159 0.92261 0.92841 0.92621 0.93321 0.92459 0.93009 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 19.25 29.55 0.57 -1.04 16 2 C -0.19 -2.03 13.73 -37.12 -0.51 -2.54 16 3 C 0.17 1.71 6.41 34.37 0.22 1.93 16 4 O -0.39 -4.78 10.30 -35.23 -0.36 -5.14 16 5 C 0.08 0.96 5.23 37.16 0.19 1.16 16 6 C -0.14 -1.75 6.07 -27.88 -0.17 -1.92 16 7 C 0.51 8.19 7.83 -10.99 -0.09 8.10 16 8 O -0.56 -10.48 15.70 5.56 0.09 -10.39 16 9 N -0.70 -11.67 5.10 -51.37 -0.26 -11.93 16 10 C 0.13 2.35 2.73 -65.40 -0.18 2.17 16 11 H 0.08 1.41 7.37 -51.93 -0.38 1.03 16 12 C -0.14 -2.89 6.23 -24.23 -0.15 -3.04 16 13 C 0.16 3.50 4.69 -62.78 -0.29 3.21 16 14 H 0.15 3.88 5.58 -51.93 -0.29 3.59 16 15 C -0.14 -2.73 6.44 -24.23 -0.16 -2.88 16 16 C -0.13 -2.29 6.44 -24.24 -0.16 -2.45 16 17 C 0.13 2.39 5.04 -62.78 -0.32 2.08 16 18 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 19 N -0.59 -13.71 2.99 -145.77 -0.44 -14.15 16 20 C -0.22 -5.58 10.59 -15.06 -0.16 -5.74 16 21 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -25.56 10.48 55.49 0.58 -24.98 16 24 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.22 1.11 7.80 -54.10 -0.42 0.69 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.76 8.10 -51.93 -0.42 0.33 16 32 H 0.06 0.71 8.10 -51.92 -0.42 0.29 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.40 6.44 8.62 -40.82 -0.35 6.08 16 36 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 37 H 0.05 1.02 7.82 -51.93 -0.41 0.61 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -30.57 351.74 -7.83 -38.39 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.42 Total: 8.00 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.29 Total: -1.29 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.12 Total: -51.06 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.28 Total: -15.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.57 -7.83 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110553280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.291 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds