Wall clock time and date at job start Tue Mar 31 2020 03:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47016 * 10.25934 * 3 2 1 5 5 C 1.42900 * 113.99691 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46888 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47137 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99699 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00134 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00186 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.55361 * 36.44585 * 10 9 7 12 12 C 1.54856 * 110.62489 * 273.55143 * 10 9 7 13 13 C 1.55847 * 103.44128 * 241.50798 * 12 10 9 14 14 H 1.08994 * 115.56232 * 159.56723 * 13 12 10 15 15 C 1.55849 * 105.06502 * 288.17535 * 13 12 10 16 16 C 1.54856 * 103.44287 * 71.82310 * 15 13 12 17 17 C 1.55838 * 103.44592 * 0.02562 * 16 15 13 18 18 H 1.09000 * 115.55987 * 159.56601 * 17 16 15 19 19 N 1.50235 * 101.05225 * 32.93598 * 17 16 15 20 20 C 1.36941 * 130.83772 * 126.01333 * 19 17 16 21 21 H 1.08004 * 119.99843 * 0.05024 * 20 19 17 22 22 C 1.38805 * 119.99777 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00498 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46820 * 59.99878 * 24 22 20 26 26 H 1.48502 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47202 * 300.00145 * 24 22 20 28 28 H 4.38441 * 5.44450 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.08995 * 109.47792 * 300.00114 * 5 4 3 32 32 H 1.09008 * 109.46914 * 60.00726 * 5 4 3 33 33 H 1.09000 * 109.47760 * 300.00182 * 6 5 4 34 34 H 1.08999 * 109.47329 * 60.00790 * 6 5 4 35 35 H 0.96999 * 120.00029 * 0.02562 * 9 7 6 36 36 H 1.08997 * 110.62932 * 359.97438 * 12 10 9 37 37 H 1.09000 * 110.62870 * 123.01874 * 12 10 9 38 38 H 1.08996 * 110.62747 * 190.31226 * 15 13 12 39 39 H 1.08995 * 110.62412 * 313.33870 * 15 13 12 40 40 H 1.08995 * 110.62380 * 118.49369 * 16 15 13 41 41 H 1.09004 * 110.62576 * 241.35288 * 16 15 13 42 42 H 0.96998 * 120.00420 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3249 -0.2400 5 6 4.5475 -1.4351 -0.2606 6 6 4.9426 -2.8895 -0.5245 7 6 6.4450 -3.0059 -0.5457 8 8 7.1320 -2.0224 -0.3677 9 7 7.0252 -4.2027 -0.7633 10 6 8.4857 -4.3158 -0.7845 11 1 8.9319 -3.6485 -0.0472 12 6 9.0360 -4.0113 -2.1996 13 6 9.7337 -5.3427 -2.6112 14 1 9.8885 -5.4813 -3.6812 15 6 11.0178 -5.4159 -1.7311 16 6 10.4675 -5.7203 -0.3160 17 6 8.9260 -5.7902 -0.5340 18 1 8.3661 -6.3242 0.2338 19 7 8.8571 -6.3523 -1.9255 20 6 8.1983 -7.4474 -2.4173 21 1 7.6056 -8.0628 -1.7566 22 6 8.2918 -7.7663 -3.7650 23 7 9.0133 -7.0158 -4.5704 24 14 7.3937 -9.2606 -4.4357 25 1 5.9350 -9.1067 -4.2038 26 1 7.6528 -9.3810 -5.8930 27 1 7.8788 -10.4816 -3.7437 28 1 -1.0498 -0.0004 0.0001 29 1 3.0090 0.6649 -0.7843 30 1 3.0092 0.3479 0.9672 31 1 4.9497 -0.8007 -1.0504 32 1 4.9504 -1.1175 0.7012 33 1 4.5405 -3.5243 0.2650 34 1 4.5398 -3.2067 -1.4864 35 1 6.4757 -4.9891 -0.9068 36 1 8.2222 -3.7766 -2.8857 37 1 9.7572 -3.1949 -2.1637 38 1 11.6705 -6.2202 -2.0704 39 1 11.5450 -4.4620 -1.7410 40 1 10.8473 -6.6755 0.0464 41 1 10.7242 -4.9187 0.3765 42 1 9.0783 -7.2384 -5.5122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110553280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:28 Heat of formation + Delta-G solvation = -4.068363 kcal Electronic energy + Delta-G solvation = -23198.133955 eV Core-core repulsion = 19759.375666 eV Total energy + Delta-G solvation = -3438.758289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31093 -40.03301 -38.95542 -35.26867 -34.46698 -34.36700 -32.54855 -30.95620 -30.38042 -29.31329 -27.86767 -26.12557 -24.78083 -22.66864 -21.52775 -21.09370 -20.24780 -19.38459 -18.83576 -18.35693 -17.45093 -17.24345 -16.97021 -16.73477 -16.10580 -15.93684 -15.70015 -15.33806 -14.91443 -14.38546 -14.27442 -13.72562 -13.65482 -13.52482 -12.91477 -12.87592 -12.77478 -12.71597 -12.56645 -12.47655 -12.08801 -11.97165 -11.88428 -11.69316 -11.54900 -11.45649 -11.20919 -10.93981 -10.90981 -10.63964 -10.57475 -9.91364 -8.85557 -7.74243 -5.13831 1.44675 1.50829 1.52124 1.57974 1.67000 1.81811 2.25946 2.52076 3.01794 3.39184 3.46741 3.61074 3.76996 4.01705 4.04112 4.11853 4.21379 4.29124 4.32001 4.44310 4.47627 4.49837 4.53130 4.66083 4.72791 4.80312 4.83939 4.85636 4.93212 5.02635 5.11257 5.19313 5.21079 5.40178 5.53976 5.62386 5.74080 5.92131 6.07064 6.27541 6.59234 6.65964 7.07530 7.29298 7.74576 8.60474 9.33175 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.003505 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.283778 B = 7987.012784 C = 9225.641584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.402 6.402 5 C 0.085 3.915 6 C -0.133 4.133 7 C 0.516 3.484 8 O -0.585 6.585 9 N -0.704 5.704 10 C 0.140 3.860 11 H 0.087 0.913 12 C -0.133 4.133 13 C 0.141 3.859 14 H 0.112 0.888 15 C -0.133 4.133 16 C -0.120 4.120 17 C 0.127 3.873 18 H 0.105 0.895 19 N -0.609 5.609 20 C -0.215 4.215 21 H 0.087 0.913 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.973 3.027 25 H -0.278 1.278 26 H -0.302 1.302 27 H -0.282 1.282 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.408 0.592 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 10.502 10.820 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.240 4.240 3 C 0.091 3.909 4 O -0.322 6.322 5 C 0.009 3.991 6 C -0.173 4.173 7 C 0.304 3.696 8 O -0.466 6.466 9 N -0.353 5.353 10 C 0.033 3.967 11 H 0.105 0.895 12 C -0.174 4.174 13 C 0.034 3.966 14 H 0.129 0.871 15 C -0.172 4.172 16 C -0.159 4.159 17 C 0.020 3.980 18 H 0.123 0.877 19 N -0.330 5.330 20 C -0.344 4.344 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.803 3.197 25 H -0.204 1.204 26 H -0.229 1.229 27 H -0.209 1.209 28 H 0.271 0.729 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.243 0.757 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.096 10.806 10.698 17.718 hybrid contribution -0.406 -1.000 -0.980 1.457 sum -9.502 9.806 9.718 16.759 Atomic orbital electron populations 1.25863 0.96812 0.95901 0.99229 1.23101 0.94888 1.03750 1.02232 1.19250 0.84628 0.84575 1.02435 1.87835 1.21887 1.28878 1.93646 1.22070 0.79460 0.95867 1.01752 1.21419 0.90684 0.98590 1.06558 1.20748 0.90863 0.82686 0.75336 1.90653 1.66421 1.37600 1.51962 1.45983 1.07950 1.10398 1.70970 1.22447 0.79543 0.98159 0.96515 0.89524 1.23317 0.99292 0.98490 0.96262 1.23525 0.88535 0.85811 0.98695 0.87076 1.22970 0.98017 0.99778 0.96467 1.22843 0.95485 1.01207 0.96409 1.23359 0.95739 0.90852 0.88017 0.87665 1.46684 1.54987 1.27687 1.03677 1.19332 1.21511 1.01159 0.92362 0.89557 1.25424 1.02113 1.01851 0.96615 1.69742 1.45527 1.40828 1.03768 0.85214 0.78435 0.79596 0.76425 1.20432 1.22904 1.20861 0.72940 0.89641 0.89181 0.92669 0.91711 0.86149 0.87533 0.75709 0.94860 0.91703 0.94436 0.91146 0.92250 0.89915 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 19.25 74.32 1.43 -1.13 16 2 C -0.24 -4.85 13.73 31.13 0.43 -4.42 16 3 C 0.17 3.13 6.41 70.18 0.45 3.58 16 4 O -0.40 -9.46 10.30 -148.98 -1.53 -11.00 16 5 C 0.09 1.94 5.23 71.98 0.38 2.31 16 6 C -0.13 -3.08 6.07 29.85 0.18 -2.89 16 7 C 0.52 15.65 7.83 87.66 0.69 16.33 16 8 O -0.59 -21.24 15.70 -3.04 -0.05 -21.29 16 9 N -0.70 -22.24 5.10 -434.81 -2.22 -24.46 16 10 C 0.14 4.86 2.73 46.63 0.13 4.98 16 11 H 0.09 2.91 7.37 -2.39 -0.02 2.90 16 12 C -0.13 -5.35 6.23 32.21 0.20 -5.15 16 13 C 0.14 6.40 4.69 46.22 0.22 6.62 16 14 H 0.11 6.02 5.58 -2.39 -0.01 6.01 16 15 C -0.13 -5.07 6.44 32.21 0.21 -4.86 16 16 C -0.12 -3.95 6.44 32.21 0.21 -3.75 16 17 C 0.13 4.57 5.04 46.24 0.23 4.80 16 18 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 19 N -0.61 -28.05 2.99 -615.10 -1.84 -29.89 16 20 C -0.21 -11.00 10.59 84.03 0.89 -10.11 16 21 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 22 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 23 N -0.95 -54.55 10.48 21.65 0.23 -54.32 16 24 Si 0.97 44.10 29.55 68.60 2.03 46.12 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H 0.25 1.76 7.80 -4.43 -0.03 1.72 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 33 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.41 12.34 8.62 -92.71 -0.80 11.54 16 36 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 37 H 0.06 2.41 7.82 -2.39 -0.02 2.39 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 2.34 7.82 -2.39 -0.02 2.32 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 2.26 7.83 -2.39 -0.02 2.24 16 42 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -66.44 351.74 2.93 -63.51 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.21 Total: 28.17 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.10 Total: 3.15 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -3.83 Total: -108.67 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.58 Total: -32.29 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -66.44 2.93 -63.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110553280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.445 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds