Wall clock time and date at job start Tue Mar 31 2020 03:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99673 * 2 1 4 4 H 1.48499 * 109.47105 * 240.00132 * 3 2 1 5 5 H 1.48504 * 109.47464 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46941 * 120.00365 * 3 2 1 7 7 C 1.38805 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00093 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46953 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21571 * 120.00410 * 0.02562 * 13 12 11 15 15 C 1.47706 * 119.99728 * 180.02562 * 13 12 11 16 16 C 1.41504 * 126.51714 * 179.71446 * 15 13 12 17 17 C 1.35368 * 105.50205 * 179.84120 * 16 15 13 18 18 N 1.35036 * 107.22964 * 0.41474 * 17 16 15 19 19 C 1.46499 * 124.88284 * 179.72267 * 18 17 16 20 20 C 1.54261 * 110.03242 * 32.88814 * 19 18 17 21 21 C 1.54965 * 104.15767 * 217.13463 * 20 19 18 22 22 C 1.54894 * 102.77883 * 37.88280 * 21 20 19 23 23 C 1.53873 * 110.03363 * 275.66255 * 19 18 17 24 24 N 1.28465 * 110.22937 * 359.72674 * 18 17 16 25 25 H 0.97000 * 120.00516 * 359.97438 * 1 2 3 26 26 H 0.96994 * 119.99386 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47062 * 60.00763 * 10 9 7 28 28 H 1.08996 * 109.47565 * 300.00227 * 10 9 7 29 29 H 1.09001 * 109.47289 * 60.00079 * 11 10 9 30 30 H 1.09004 * 109.47261 * 300.00335 * 11 10 9 31 31 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 32 32 H 1.08003 * 127.24943 * 359.97438 * 16 15 13 33 33 H 1.07999 * 126.38651 * 180.13622 * 17 16 15 34 34 H 1.09005 * 110.01511 * 154.27648 * 19 18 17 35 35 H 1.08998 * 110.48904 * 335.77405 * 20 19 18 36 36 H 1.08991 * 110.49065 * 98.42242 * 20 19 18 37 37 H 1.09004 * 110.71805 * 279.57087 * 21 20 19 38 38 H 1.09005 * 110.76899 * 156.22169 * 21 20 19 39 39 H 1.08998 * 110.48488 * 203.40014 * 22 21 20 40 40 H 1.09009 * 110.59387 * 80.81924 * 22 21 20 41 41 H 1.08998 * 110.03596 * 238.56980 * 23 19 18 42 42 H 1.09004 * 110.03316 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 7 1.7965 -6.0884 -0.0006 13 6 1.1226 -7.2556 -0.0015 14 8 -0.0931 -7.2557 -0.0033 15 6 1.8612 -8.5347 -0.0003 16 6 1.2974 -9.8326 0.0046 17 6 2.3497 -10.6842 0.0002 18 7 3.4720 -9.9332 0.0024 19 6 4.8366 -10.4661 0.0049 20 6 4.8876 -11.7919 -0.7821 21 6 5.8928 -12.6649 0.0108 22 6 5.5738 -12.3035 1.4828 23 6 5.2730 -10.7909 1.4443 24 7 3.1708 -8.6844 0.0021 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6847 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8904 29 1 0.4376 -4.7618 -0.8914 30 1 0.4369 -4.7621 0.8886 31 1 2.7665 -6.0883 0.0005 32 1 0.2484 -10.0897 0.0086 33 1 2.3008 -11.7631 0.0000 34 1 5.5206 -9.7422 -0.4382 35 1 3.9049 -12.2630 -0.8001 36 1 5.2478 -11.6198 -1.7963 37 1 6.9189 -12.3953 -0.2395 38 1 5.7146 -13.7243 -0.1742 39 1 6.4345 -12.5053 2.1203 40 1 4.7025 -12.8569 1.8333 41 1 6.1693 -10.2255 1.6994 42 1 4.4693 -10.5525 2.1410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128450682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:44 Heat of formation + Delta-G solvation = 47.419609 kcal Electronic energy + Delta-G solvation = -22256.870444 eV Core-core repulsion = 18852.637592 eV Total energy + Delta-G solvation = -3404.232852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.89620 -39.25638 -38.41079 -35.58959 -33.76676 -32.70071 -31.28895 -30.81346 -29.40349 -28.58045 -27.35986 -24.19204 -22.95284 -22.48989 -21.36373 -21.16228 -20.23440 -19.76310 -18.15130 -17.28639 -16.93640 -16.37976 -15.71126 -15.44814 -15.12105 -14.93723 -14.50907 -14.24249 -13.87306 -13.59358 -13.54504 -13.16559 -13.09263 -12.76835 -12.64604 -12.17412 -11.81478 -11.78400 -11.44256 -11.35940 -11.22260 -11.07333 -11.01538 -10.75973 -10.75717 -10.13645 -9.97473 -9.69109 -9.40312 -9.19961 -8.91010 -8.70683 -6.94068 -5.74635 -3.05105 1.54039 2.02761 2.16864 3.36811 3.46244 3.50456 3.52021 3.55117 3.70472 3.87016 4.20642 4.41382 4.50178 4.61999 4.64952 4.73122 4.75760 4.83280 4.94248 5.11954 5.23892 5.27157 5.39760 5.43372 5.54055 5.55506 5.55661 5.61898 5.64978 5.68343 5.85692 6.04296 6.21404 6.28009 6.57479 6.59437 6.78651 6.84062 7.61432 7.70168 7.89651 8.40932 8.43697 9.54155 10.09506 10.44657 11.47954 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027113 B = 0.002410 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.462024 B =11616.819142 C =12412.951851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.710 5.710 13 C 0.600 3.400 14 O -0.535 6.535 15 C -0.013 4.013 16 C -0.178 4.178 17 C -0.022 4.022 18 N -0.276 5.276 19 C 0.143 3.857 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.137 4.137 24 N -0.261 5.261 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.405 0.595 32 H 0.162 0.838 33 H 0.179 0.821 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.623 -30.721 0.586 33.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.361 5.361 13 C 0.384 3.616 14 O -0.410 6.410 15 C -0.173 4.173 16 C -0.206 4.206 17 C -0.164 4.164 18 N -0.064 5.064 19 C 0.042 3.958 20 C -0.175 4.175 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.175 4.175 24 N -0.096 5.096 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.240 0.760 32 H 0.179 0.821 33 H 0.196 0.804 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.966 -29.978 0.587 32.667 hybrid contribution -0.089 0.476 0.007 0.484 sum 12.877 -29.502 0.594 32.196 Atomic orbital electron populations 1.69657 1.05124 1.25904 1.57256 1.24777 0.95575 0.97790 1.02786 0.86218 0.78472 0.83332 0.77836 1.21218 1.21637 1.21225 1.19155 0.91012 0.83882 1.43334 0.91097 1.42183 1.06014 0.99553 1.89704 1.20752 0.93494 0.85603 0.98500 1.21620 0.95459 0.81469 1.02722 1.45786 1.10839 1.05529 1.73912 1.16876 0.86297 0.81754 0.76715 1.90799 1.12750 1.86939 1.50542 1.22030 0.89544 0.95393 1.10326 1.21781 1.00274 0.90534 1.08022 1.22679 0.85562 0.99234 1.08955 1.45705 1.07164 1.02881 1.50676 1.22345 0.78697 0.96757 0.98024 1.22855 1.01599 0.93473 0.99540 1.22500 0.99142 0.99824 0.94519 1.22388 1.02059 0.94850 0.96976 1.22601 1.02762 0.97371 0.94763 1.73518 1.16492 1.00657 1.18948 0.93344 0.77981 0.95725 0.95725 0.91063 0.91079 0.76024 0.82065 0.80431 0.86949 0.89824 0.89899 0.90665 0.90515 0.90783 0.91140 0.89800 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -19.19 5.60 -59.91 -0.34 -19.52 16 10 C 0.14 3.01 6.37 -4.05 -0.03 2.98 16 11 C 0.11 2.07 5.79 -4.04 -0.02 2.04 16 12 N -0.71 -11.56 5.55 -61.29 -0.34 -11.90 16 13 C 0.60 10.27 7.82 -12.39 -0.10 10.17 16 14 O -0.54 -10.80 16.93 5.30 0.09 -10.71 16 15 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 16 C -0.18 -2.12 10.81 -39.36 -0.43 -2.54 16 17 C -0.02 -0.20 10.38 -17.17 -0.18 -0.37 16 18 N -0.28 -2.66 3.13 -53.74 -0.17 -2.83 16 19 C 0.14 0.90 3.87 -66.82 -0.26 0.64 16 20 C -0.14 -0.55 6.36 -25.03 -0.16 -0.71 16 21 C -0.12 -0.35 6.91 -24.70 -0.17 -0.52 16 22 C -0.13 -0.45 6.83 -25.07 -0.17 -0.62 16 23 C -0.14 -0.73 6.60 -25.62 -0.17 -0.90 16 24 N -0.26 -3.34 11.67 33.42 0.39 -2.95 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 26 H 0.39 10.69 7.67 -40.82 -0.31 10.38 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.41 5.84 8.20 -40.82 -0.33 5.51 16 32 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.18 0.91 6.84 -52.49 -0.36 0.55 16 34 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.32 5.86 -51.93 -0.30 0.01 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -34.81 351.42 -8.22 -43.03 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.34 Total: 8.14 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.52 Total: 1.81 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: 0.27 Total: -65.26 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.81 -8.22 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128450682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.454 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds