Wall clock time and date at job start Tue Mar 31 2020 03:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99673 * 2 1 4 4 H 1.48499 * 109.47105 * 240.00132 * 3 2 1 5 5 H 1.48504 * 109.47464 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46941 * 120.00365 * 3 2 1 7 7 C 1.38805 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00093 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46953 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21571 * 120.00410 * 0.02562 * 13 12 11 15 15 C 1.47706 * 119.99728 * 180.02562 * 13 12 11 16 16 C 1.41504 * 126.51714 * 179.71446 * 15 13 12 17 17 C 1.35368 * 105.50205 * 179.84120 * 16 15 13 18 18 N 1.35036 * 107.22964 * 0.41474 * 17 16 15 19 19 C 1.46499 * 124.88284 * 179.72267 * 18 17 16 20 20 C 1.54261 * 110.03242 * 32.88814 * 19 18 17 21 21 C 1.54965 * 104.15767 * 217.13463 * 20 19 18 22 22 C 1.54894 * 102.77883 * 37.88280 * 21 20 19 23 23 C 1.53873 * 110.03363 * 275.66255 * 19 18 17 24 24 N 1.28465 * 110.22937 * 359.72674 * 18 17 16 25 25 H 0.97000 * 120.00516 * 359.97438 * 1 2 3 26 26 H 0.96994 * 119.99386 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47062 * 60.00763 * 10 9 7 28 28 H 1.08996 * 109.47565 * 300.00227 * 10 9 7 29 29 H 1.09001 * 109.47289 * 60.00079 * 11 10 9 30 30 H 1.09004 * 109.47261 * 300.00335 * 11 10 9 31 31 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 32 32 H 1.08003 * 127.24943 * 359.97438 * 16 15 13 33 33 H 1.07999 * 126.38651 * 180.13622 * 17 16 15 34 34 H 1.09005 * 110.01511 * 154.27648 * 19 18 17 35 35 H 1.08998 * 110.48904 * 335.77405 * 20 19 18 36 36 H 1.08991 * 110.49065 * 98.42242 * 20 19 18 37 37 H 1.09004 * 110.71805 * 279.57087 * 21 20 19 38 38 H 1.09005 * 110.76899 * 156.22169 * 21 20 19 39 39 H 1.08998 * 110.48488 * 203.40014 * 22 21 20 40 40 H 1.09009 * 110.59387 * 80.81924 * 22 21 20 41 41 H 1.08998 * 110.03596 * 238.56980 * 23 19 18 42 42 H 1.09004 * 110.03316 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 7 1.7965 -6.0884 -0.0006 13 6 1.1226 -7.2556 -0.0015 14 8 -0.0931 -7.2557 -0.0033 15 6 1.8612 -8.5347 -0.0003 16 6 1.2974 -9.8326 0.0046 17 6 2.3497 -10.6842 0.0002 18 7 3.4720 -9.9332 0.0024 19 6 4.8366 -10.4661 0.0049 20 6 4.8876 -11.7919 -0.7821 21 6 5.8928 -12.6649 0.0108 22 6 5.5738 -12.3035 1.4828 23 6 5.2730 -10.7909 1.4443 24 7 3.1708 -8.6844 0.0021 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6847 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8904 29 1 0.4376 -4.7618 -0.8914 30 1 0.4369 -4.7621 0.8886 31 1 2.7665 -6.0883 0.0005 32 1 0.2484 -10.0897 0.0086 33 1 2.3008 -11.7631 0.0000 34 1 5.5206 -9.7422 -0.4382 35 1 3.9049 -12.2630 -0.8001 36 1 5.2478 -11.6198 -1.7963 37 1 6.9189 -12.3953 -0.2395 38 1 5.7146 -13.7243 -0.1742 39 1 6.4345 -12.5053 2.1203 40 1 4.7025 -12.8569 1.8333 41 1 6.1693 -10.2255 1.6994 42 1 4.4693 -10.5525 2.1410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128450682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:44 Heat of formation + Delta-G solvation = 22.883095 kcal Electronic energy + Delta-G solvation = -22257.934427 eV Core-core repulsion = 18852.637592 eV Total energy + Delta-G solvation = -3405.296835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74850 -40.56913 -38.91356 -37.34114 -35.54188 -33.56924 -33.05098 -31.80397 -29.85999 -29.71040 -28.52258 -25.88576 -24.31749 -23.31125 -22.96317 -21.56812 -21.17862 -20.61958 -19.37974 -18.88659 -17.93863 -17.19136 -16.95668 -16.64323 -16.47401 -16.08314 -15.59482 -15.44661 -15.05859 -15.04480 -14.84632 -14.44680 -14.29388 -13.82278 -13.13741 -13.09762 -13.05200 -12.68731 -12.61856 -12.56841 -12.13893 -12.12025 -12.03638 -11.99567 -11.88692 -11.76392 -11.48588 -11.35270 -10.99188 -10.37791 -10.17873 -9.97897 -9.08174 -7.96962 -5.29049 0.48455 1.16906 1.44039 1.47953 1.52104 1.58228 2.06075 2.32361 2.57637 3.19436 3.36487 3.50193 3.56845 3.81660 3.88437 3.95276 4.06321 4.18668 4.18715 4.32097 4.39158 4.43670 4.48924 4.54177 4.64871 4.73784 4.76138 4.85701 4.98139 5.01470 5.06239 5.09302 5.21092 5.24016 5.27732 5.36446 5.42398 5.47354 5.88912 6.23218 6.38011 6.88834 7.10323 7.29493 8.00128 8.24727 9.26437 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027113 B = 0.002410 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.462024 B =11616.819142 C =12412.951851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.082 0.918 9 N -0.746 5.746 10 C 0.150 3.850 11 C 0.128 3.872 12 N -0.701 5.701 13 C 0.599 3.401 14 O -0.574 6.574 15 C -0.045 4.045 16 C -0.199 4.199 17 C 0.001 3.999 18 N -0.266 5.266 19 C 0.132 3.868 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.134 4.134 24 N -0.274 5.274 25 H 0.253 0.747 26 H 0.375 0.625 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.415 0.585 32 H 0.164 0.836 33 H 0.222 0.778 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.092 -32.843 0.456 36.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.810 3.190 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.383 4.383 8 H 0.100 0.900 9 N -0.389 5.389 10 C 0.024 3.976 11 C 0.003 3.997 12 N -0.353 5.353 13 C 0.385 3.615 14 O -0.452 6.452 15 C -0.203 4.203 16 C -0.227 4.227 17 C -0.141 4.141 18 N -0.055 5.055 19 C 0.032 3.968 20 C -0.170 4.170 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.173 4.173 24 N -0.111 5.111 25 H 0.062 0.938 26 H 0.207 0.793 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.182 0.818 33 H 0.238 0.762 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.507 -32.134 0.457 35.683 hybrid contribution -0.751 0.986 0.060 1.241 sum 14.756 -31.148 0.517 34.470 Atomic orbital electron populations 1.69833 1.06815 1.26433 1.58921 1.25705 0.96504 1.01530 1.03206 0.85093 0.77098 0.78464 0.78349 1.20089 1.22129 1.20107 1.19612 0.91707 0.84849 1.42104 0.90029 1.42396 1.05776 1.00941 1.89811 1.20805 0.93538 0.84154 0.99151 1.21242 0.94813 0.82008 1.01623 1.45620 1.11195 1.04642 1.73800 1.17277 0.86037 0.82650 0.75558 1.90764 1.14458 1.87618 1.52374 1.21714 0.90432 0.94799 1.13326 1.21989 1.01412 0.90077 1.09198 1.23225 0.84144 1.00745 1.06015 1.46130 1.08696 1.02088 1.48555 1.22759 0.76921 0.97871 0.99203 1.22889 1.02467 0.92101 0.99560 1.22492 0.99044 1.00296 0.93455 1.22385 1.02536 0.93179 0.97796 1.22583 1.02132 0.99033 0.93522 1.73448 1.15659 1.02561 1.19441 0.93825 0.79321 0.94650 0.94633 0.92231 0.92264 0.74802 0.81808 0.76157 0.87049 0.89078 0.89414 0.90156 0.89170 0.90078 0.90820 0.89482 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.75 -39.68 5.60 -343.47 -1.92 -41.60 16 10 C 0.15 6.25 6.37 86.38 0.55 6.80 16 11 C 0.13 4.87 5.79 86.38 0.50 5.37 16 12 N -0.70 -23.19 5.55 -466.09 -2.59 -25.78 16 13 C 0.60 21.08 7.82 86.75 0.68 21.76 16 14 O -0.57 -24.10 16.93 -3.94 -0.07 -24.17 16 15 C -0.04 -1.29 7.13 42.46 0.30 -0.99 16 16 C -0.20 -4.59 10.81 22.41 0.24 -4.35 16 17 C 0.00 0.02 10.38 83.54 0.87 0.89 16 18 N -0.27 -4.65 3.13 -323.95 -1.02 -5.67 16 19 C 0.13 1.37 3.87 45.71 0.18 1.55 16 20 C -0.13 -0.64 6.36 31.69 0.20 -0.44 16 21 C -0.12 -0.26 6.91 31.91 0.22 -0.04 16 22 C -0.12 -0.52 6.83 31.67 0.22 -0.30 16 23 C -0.13 -1.18 6.60 31.32 0.21 -0.98 16 24 N -0.27 -6.85 11.67 -48.17 -0.56 -7.41 16 25 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 26 H 0.37 21.36 7.67 -92.71 -0.71 20.65 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.42 11.94 8.20 -92.71 -0.76 11.18 16 32 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.22 1.32 6.84 -2.91 -0.02 1.30 16 34 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.09 0.32 5.86 -2.39 -0.01 0.31 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 39 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.76 7.92 -2.39 -0.02 0.74 16 Total: -1.00 -75.99 351.42 1.19 -74.80 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.43 Total: 30.14 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.47 Total: 11.69 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -5.81 Total: -141.18 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.07 Total: -24.17 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.99 1.19 -74.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128450682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.686 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds