Wall clock time and date at job start Tue Mar 31 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34861 * 125.96662 * 2 1 4 4 N 1.36313 * 106.68646 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.40210 * 0.03171 * 4 3 2 6 6 N 1.30088 * 108.62712 * 359.95476 * 5 4 3 7 7 C 1.51042 * 123.98232 * 179.88375 * 5 4 3 8 8 C 1.53395 * 108.20345 * 344.01897 * 7 5 4 9 9 H 1.08999 * 109.54857 * 288.88806 * 8 7 5 10 10 C 1.50702 * 109.50990 * 168.77399 * 8 7 5 11 11 O 1.21283 * 120.00262 * 240.23938 * 10 8 7 12 12 N 1.34777 * 119.99928 * 59.95843 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.47555 * 180.02562 * 14 13 12 16 16 C 1.36929 * 120.00268 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00157 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00135 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47077 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47093 * 119.99816 * 20 18 16 23 23 H 1.48503 * 109.47239 * 240.00096 * 20 18 16 24 24 C 1.53151 * 109.24165 * 48.84618 * 8 7 5 25 25 C 1.46472 * 127.77262 * 180.02562 * 4 3 2 26 26 H 1.08997 * 109.46914 * 270.00692 * 1 2 3 27 27 H 1.09002 * 109.46704 * 29.99595 * 1 2 3 28 28 H 1.08991 * 109.47380 * 149.99732 * 1 2 3 29 29 H 1.07998 * 126.65520 * 359.96791 * 3 2 1 30 30 H 1.09000 * 109.71719 * 224.33633 * 7 5 4 31 31 H 1.09003 * 109.71294 * 103.69672 * 7 5 4 32 32 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 33 33 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 34 34 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 35 35 H 1.08998 * 109.47382 * 300.00439 * 14 13 12 36 36 H 1.09005 * 109.46800 * 60.00640 * 14 13 12 37 37 H 0.97000 * 119.99478 * 0.02562 * 15 14 13 38 38 H 0.97004 * 120.00691 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.46451 * 50.52468 * 24 8 7 40 40 H 1.09002 * 109.46711 * 170.51709 * 24 8 7 41 41 H 1.09000 * 109.58484 * 43.10150 * 25 4 3 42 42 H 1.09001 * 109.69390 * 282.75812 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6414 0.0006 5 6 3.5413 -0.7121 0.0002 6 7 2.2957 -1.0870 0.0004 7 6 4.7655 -1.5969 -0.0019 8 6 5.9739 -0.7421 -0.4046 9 1 5.9055 -0.4895 -1.4627 10 6 7.2431 -1.5146 -0.1527 11 8 8.0741 -1.0813 0.6172 12 7 7.4522 -2.6898 -0.7786 13 6 8.6833 -3.4437 -0.5291 14 6 8.6709 -4.7295 -1.3581 15 7 9.9017 -5.4837 -1.1082 16 6 10.1146 -6.6772 -1.7448 17 1 9.3753 -7.0624 -2.4315 18 6 11.2806 -7.3921 -1.5076 19 7 12.1818 -6.9225 -0.6711 20 14 11.5714 -9.0199 -2.3766 21 1 10.4166 -9.3228 -3.2597 22 1 12.8085 -8.9309 -3.1933 23 1 11.7206 -10.0997 -1.3681 24 6 5.9833 0.5428 0.4286 25 6 4.8149 1.4380 0.0013 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.9765 2.1222 -0.0005 30 1 4.6325 -2.4069 -0.7191 31 1 4.9226 -2.0095 0.9947 32 1 6.7877 -3.0364 -1.3944 33 1 9.5441 -2.8377 -0.8120 34 1 8.7477 -3.6942 0.5298 35 1 7.8101 -5.3356 -1.0756 36 1 8.6068 -4.4786 -2.4169 37 1 10.5658 -5.1376 -0.4917 38 1 12.9964 -7.4222 -0.5050 39 1 5.8816 0.2919 1.4844 40 1 6.9230 1.0719 0.2698 41 1 4.7133 2.2659 0.7031 42 1 5.0004 1.8282 -0.9994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130240847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:05 Heat of formation + Delta-G solvation = 23.383658 kcal Electronic energy + Delta-G solvation = -22499.083015 eV Core-core repulsion = 19093.807886 eV Total energy + Delta-G solvation = -3405.275129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63133 -39.98062 -36.75769 -35.69017 -34.04441 -33.53156 -31.81331 -31.23958 -29.36624 -28.04684 -27.14493 -24.50440 -23.90646 -22.82590 -21.50374 -20.82486 -20.10436 -19.40733 -17.48132 -17.17730 -17.01822 -16.22331 -15.66880 -15.56897 -14.66490 -14.61898 -14.45942 -14.41690 -14.10738 -13.85319 -13.57091 -13.21680 -13.18235 -12.94138 -12.77110 -12.55324 -12.14454 -11.99022 -11.62146 -11.52873 -11.41606 -11.13861 -10.84219 -10.83798 -10.16207 -10.11080 -9.93943 -9.76421 -9.73360 -9.04726 -8.88893 -8.44055 -7.01671 -5.81606 -3.12423 1.76425 2.46395 2.52125 2.83871 3.07169 3.41224 3.46720 3.49104 3.87260 4.10160 4.20133 4.23257 4.56803 4.61858 4.71059 4.74095 4.80281 4.96624 5.03175 5.09173 5.30541 5.36778 5.46842 5.47790 5.48469 5.50056 5.63562 5.70242 5.73574 5.78828 5.92162 6.06093 6.10428 6.41736 6.54613 6.66746 6.68349 6.89669 7.49120 7.64958 7.88695 8.17252 8.35897 9.47382 10.01730 10.36295 11.40987 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.002454 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.719013 B =11406.273089 C =12192.417481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.214 3.786 6 N -0.484 5.484 7 C -0.025 4.025 8 C -0.112 4.112 9 H 0.105 0.895 10 C 0.519 3.481 11 O -0.537 6.537 12 N -0.719 5.719 13 C 0.110 3.890 14 C 0.144 3.856 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C -0.116 4.116 25 C 0.104 3.896 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.173 0.827 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.401 0.599 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.470 20.101 0.437 28.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.189 4.189 4 N -0.139 5.139 5 C -0.048 4.048 6 N -0.203 5.203 7 C -0.064 4.064 8 C -0.134 4.134 9 H 0.123 0.877 10 C 0.303 3.697 11 O -0.414 6.414 12 N -0.370 5.370 13 C -0.014 4.014 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.154 4.154 25 C -0.018 4.018 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.190 0.810 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.235 0.765 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.016 19.556 0.887 27.997 hybrid contribution 0.423 -0.018 -0.580 0.718 sum -19.593 19.537 0.307 27.671 Atomic orbital electron populations 1.19999 0.87690 1.02533 1.02080 1.20815 0.96492 0.88296 1.07825 1.22296 0.82850 1.00366 1.13347 1.45384 1.06593 1.07432 1.54480 1.23060 0.94648 0.81546 1.05591 1.69957 0.99626 1.30419 1.20312 1.20142 0.85999 0.95497 1.04745 1.21441 0.93232 0.96042 1.02684 0.87706 1.20177 0.87588 0.81308 0.80600 1.90732 1.46307 1.68527 1.35800 1.45955 1.22853 1.21671 1.46528 1.21615 0.85604 0.93112 1.01030 1.20763 0.91563 0.89926 0.96167 1.42193 1.18463 1.22921 1.53910 1.19234 1.02275 0.96305 1.19624 0.90948 1.24788 0.96959 0.99265 0.99883 1.69674 1.10022 1.39442 1.38730 0.86077 0.77659 0.83456 0.78718 1.20481 1.21782 1.21747 1.21734 0.98105 0.94490 1.01055 1.22057 0.81924 0.94413 1.03456 0.91564 0.91500 0.91203 0.80961 0.87898 0.88492 0.76497 0.91198 0.91126 0.95674 0.95784 0.78015 0.93400 0.89811 0.87915 0.88760 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.00 0.38 -0.12 16 2 C -0.01 -0.06 7.10 -82.71 -0.59 -0.64 16 3 C -0.06 -0.49 11.55 -16.76 -0.19 -0.69 16 4 N -0.46 -4.11 3.13 -113.75 -0.36 -4.47 16 5 C 0.21 2.35 7.65 -155.24 -1.19 1.16 16 6 N -0.48 -6.26 11.24 -6.88 -0.08 -6.33 16 7 C -0.02 -0.22 5.46 -27.51 -0.15 -0.37 16 8 C -0.11 -0.96 2.55 -91.49 -0.23 -1.19 16 9 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 10 C 0.52 6.40 7.13 -10.98 -0.08 6.32 16 11 O -0.54 -8.75 15.83 5.55 0.09 -8.67 16 12 N -0.72 -8.87 5.46 -60.29 -0.33 -9.20 16 13 C 0.11 1.79 5.79 -4.04 -0.02 1.77 16 14 C 0.14 2.74 6.37 -4.04 -0.03 2.71 16 15 N -0.73 -18.30 5.60 -59.91 -0.34 -18.64 16 16 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C -0.12 -0.89 4.67 -26.51 -0.12 -1.02 16 25 C 0.10 0.63 6.98 -3.92 -0.03 0.60 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 31 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.40 3.87 8.18 -40.82 -0.33 3.53 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.25 7.67 -40.82 -0.31 9.94 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.10 0.79 7.79 -51.93 -0.40 0.39 16 41 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -35.27 349.78 -9.04 -44.31 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.50 Total: 6.75 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.50 Total: 1.17 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -0.37 Total: -66.04 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.27 -9.04 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130240847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.694 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds