Wall clock time and date at job start Tue Mar 31 2020 03:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38550 * 120.01614 * 2 1 4 4 C 1.40077 * 117.81664 * 179.97438 * 3 2 1 5 5 C 1.48140 * 121.14406 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99836 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99842 * 180.02562 * 5 4 3 8 8 C 1.46495 * 119.99718 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47210 * 324.99916 * 8 7 5 10 10 C 1.52999 * 109.47389 * 85.00140 * 8 7 5 11 11 C 1.53006 * 109.46696 * 204.99517 * 8 7 5 12 12 C 1.52997 * 109.46841 * 65.00499 * 11 8 7 13 13 H 1.09005 * 109.47159 * 54.99606 * 12 11 8 14 14 C 1.52999 * 109.47264 * 174.99605 * 12 11 8 15 15 N 1.46498 * 109.47167 * 294.99436 * 12 11 8 16 16 C 1.36935 * 120.00239 * 154.99975 * 15 12 11 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 12 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.39764 * 117.70735 * 0.27596 * 4 3 2 25 25 N 1.31892 * 119.65629 * 359.43880 * 24 4 3 26 26 N 1.28280 * 122.32832 * 0.58678 * 25 24 4 27 27 H 1.08992 * 109.47112 * 89.99725 * 1 2 3 28 28 H 1.08999 * 109.47226 * 210.00309 * 1 2 3 29 29 H 1.09005 * 109.46945 * 330.00259 * 1 2 3 30 30 H 1.08000 * 121.08992 * 359.95607 * 3 2 1 31 31 H 0.96997 * 119.99976 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47086 * 299.99744 * 10 8 7 33 33 H 1.09007 * 109.47428 * 59.99518 * 10 8 7 34 34 H 1.09001 * 109.47632 * 179.97438 * 10 8 7 35 35 H 1.08996 * 109.47489 * 304.99916 * 11 8 7 36 36 H 1.09001 * 109.46720 * 184.99882 * 11 8 7 37 37 H 1.08994 * 109.47214 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47102 * 299.99987 * 14 12 11 39 39 H 1.09005 * 109.47033 * 59.99923 * 14 12 11 40 40 H 0.97004 * 119.99747 * 335.00715 * 15 12 11 41 41 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 42 42 H 1.07998 * 120.17228 * 179.70800 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1459 0.0006 5 6 4.4141 2.3835 0.0000 6 8 3.8689 3.4694 -0.0004 7 7 5.7596 2.3048 0.0001 8 6 6.5648 3.5286 0.0001 9 1 6.0613 4.2948 -0.5893 10 6 6.7401 4.0238 1.4371 11 6 7.9373 3.2360 -0.6094 12 6 7.7712 2.8609 -2.0834 13 1 7.2255 3.6505 -2.6000 14 6 9.1498 2.6899 -2.7246 15 7 7.0256 1.6040 -2.1864 16 6 6.3165 1.3197 -3.3228 17 1 6.3073 2.0218 -4.1435 18 6 5.6096 0.1291 -3.4202 19 7 5.6252 -0.7290 -2.4223 20 14 4.6429 -0.2591 -4.9708 21 1 3.2573 0.2569 -4.8324 22 1 5.2975 0.3866 -6.1369 23 1 4.6054 -1.7294 -5.1757 24 6 4.2017 -0.1155 -0.0049 25 7 3.4483 -1.1980 0.0009 26 7 2.1668 -1.1420 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6782 2.1452 -0.0007 31 1 6.1947 1.4379 0.0008 32 1 5.7623 4.2322 1.8714 33 1 7.2436 3.2575 2.0266 34 1 7.3396 4.9341 1.4372 35 1 8.4037 2.4089 -0.0743 36 1 8.5670 4.1221 -0.5288 37 1 9.0314 2.4222 -3.7746 38 1 9.7046 3.6250 -2.6480 39 1 9.6954 1.9003 -2.2080 40 1 7.0340 0.9733 -1.4494 41 1 6.1275 -0.5277 -1.6172 42 1 5.2781 -0.2033 -0.0094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134204158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:29 Heat of formation + Delta-G solvation = 32.220644 kcal Electronic energy + Delta-G solvation = -24699.970798 eV Core-core repulsion = 21295.078869 eV Total energy + Delta-G solvation = -3404.891929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72718 -39.26627 -37.04792 -34.52373 -33.67472 -33.05376 -32.27394 -30.54751 -28.41379 -27.92549 -26.51386 -24.83873 -23.71197 -23.29281 -21.26955 -20.53944 -19.90797 -17.69182 -17.57438 -16.93580 -15.89422 -15.78609 -15.16326 -14.89479 -14.48336 -14.23939 -14.11400 -13.62960 -13.26689 -13.22686 -13.11268 -12.87201 -12.62844 -12.29059 -12.26439 -12.11629 -11.84427 -11.73035 -11.22563 -10.84651 -10.60980 -10.55341 -10.43424 -10.25234 -10.06849 -9.96058 -9.71499 -9.32559 -9.23514 -9.07670 -9.03118 -8.64131 -7.11625 -6.17265 -3.18278 0.83872 1.39332 3.19599 3.44477 3.47748 3.49945 3.65165 4.14521 4.41778 4.58096 4.74926 4.89922 4.95627 5.05804 5.19885 5.23629 5.28816 5.45273 5.51140 5.53121 5.61280 5.66703 5.69801 5.78349 5.82859 5.96656 5.98587 6.07083 6.14854 6.20734 6.25855 6.34162 6.37979 6.40570 6.59543 6.69600 6.83620 6.92441 7.70968 7.81193 8.51180 8.59720 9.05667 9.22493 9.90471 10.06207 11.24620 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.007902 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.069472 B = 3542.455044 C = 5169.547626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.043 3.957 3 C -0.066 4.066 4 C -0.132 4.132 5 C 0.575 3.425 6 O -0.548 6.548 7 N -0.691 5.691 8 C 0.150 3.850 9 H 0.087 0.913 10 C -0.163 4.163 11 C -0.136 4.136 12 C 0.174 3.826 13 H 0.050 0.950 14 C -0.163 4.163 15 N -0.727 5.727 16 C -0.314 4.314 17 H 0.063 0.937 18 C -0.044 4.044 19 N -0.923 5.923 20 Si 1.073 2.927 21 H -0.299 1.299 22 H -0.296 1.296 23 H -0.286 1.286 24 C 0.112 3.888 25 N -0.221 5.221 26 N -0.232 5.232 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.399 0.601 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.044 0.956 40 H 0.358 0.642 41 H 0.247 0.753 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 6.524 7.768 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.096 4.096 4 C -0.147 4.147 5 C 0.361 3.639 6 O -0.427 6.427 7 N -0.342 5.342 8 C 0.045 3.955 9 H 0.105 0.895 10 C -0.221 4.221 11 C -0.174 4.174 12 C 0.064 3.936 13 H 0.068 0.932 14 C -0.223 4.223 15 N -0.371 5.371 16 C -0.445 4.445 17 H 0.081 0.919 18 C -0.241 4.241 19 N -0.570 5.570 20 Si 0.905 3.095 21 H -0.227 1.227 22 H -0.223 1.223 23 H -0.212 1.212 24 C -0.053 4.053 25 N -0.062 5.062 26 N -0.077 5.077 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.169 0.831 31 H 0.236 0.764 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.192 0.808 41 H 0.059 0.941 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.288 4.668 6.811 8.568 hybrid contribution 1.522 2.146 0.476 2.673 sum -0.766 6.813 7.288 10.006 Atomic orbital electron populations 1.20595 0.87784 1.03450 1.03387 1.22730 0.98827 0.90303 0.98306 1.22262 0.93265 1.00034 0.93991 1.21131 0.95034 0.95437 1.03049 1.17787 0.82372 0.87772 0.75976 1.90697 1.72102 1.28726 1.51133 1.45870 1.05304 1.09883 1.73181 1.20889 0.91427 0.87257 0.95882 0.89504 1.22212 1.02105 1.01030 0.96782 1.22249 0.95433 1.01907 0.97830 1.20246 0.91561 0.89856 0.91920 0.93152 1.22391 0.98641 0.99400 1.01852 1.42504 1.58340 1.18233 1.18066 1.20067 1.25134 1.04633 0.94668 0.91853 1.25567 1.00884 0.93118 1.04561 1.71152 1.43836 1.36544 1.05459 0.83294 0.75614 0.76200 0.74428 1.22721 1.22279 1.21221 1.24261 1.02109 0.88191 0.90728 1.72996 0.98260 1.26688 1.08249 1.72781 1.02696 1.24790 1.07455 0.90175 0.90201 0.90678 0.83087 0.76365 0.92263 0.92655 0.91774 0.91715 0.90345 0.92749 0.94366 0.93671 0.80771 0.94058 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.19 36.01 0.37 -0.76 16 2 C 0.04 0.73 6.86 -82.45 -0.57 0.16 16 3 C -0.07 -1.15 9.43 -38.78 -0.37 -1.52 16 4 C -0.13 -2.55 5.92 -104.57 -0.62 -3.16 16 5 C 0.58 11.10 7.77 -12.19 -0.09 11.00 16 6 O -0.55 -11.52 16.15 5.35 0.09 -11.44 16 7 N -0.69 -11.76 3.76 -54.66 -0.21 -11.96 16 8 C 0.15 2.25 2.57 -67.93 -0.17 2.07 16 9 H 0.09 1.49 7.58 -51.93 -0.39 1.09 16 10 C -0.16 -2.01 9.48 37.16 0.35 -1.66 16 11 C -0.14 -1.89 4.43 -26.73 -0.12 -2.00 16 12 C 0.17 3.09 2.89 -67.93 -0.20 2.89 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 15 N -0.73 -15.68 3.84 -53.43 -0.21 -15.88 16 16 C -0.31 -8.04 9.93 -15.06 -0.15 -8.19 16 17 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 18 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 19 N -0.92 -24.99 12.25 55.49 0.68 -24.31 16 20 Si 1.07 25.85 29.92 -169.99 -5.09 20.76 16 21 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.11 2.26 9.19 -16.96 -0.16 2.10 16 25 N -0.22 -4.76 11.49 30.78 0.35 -4.41 16 26 N -0.23 -4.65 11.40 33.58 0.38 -4.27 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.15 2.34 7.80 -52.49 -0.41 1.93 16 31 H 0.40 6.72 4.67 -40.82 -0.19 6.52 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.36 7.67 4.54 -40.82 -0.19 7.48 16 41 H 0.25 6.31 4.80 -40.82 -0.20 6.11 16 42 H 0.17 3.24 4.82 -52.49 -0.25 2.98 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -30.83 343.41 -6.18 -37.01 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.90 Total: 11.98 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.46 Total: -2.66 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 1.01 Total: -60.83 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.83 -6.18 -37.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134204158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.231 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds