Wall clock time and date at job start Tue Mar 31 2020 03:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38550 * 120.01614 * 2 1 4 4 C 1.40077 * 117.81664 * 179.97438 * 3 2 1 5 5 C 1.48140 * 121.14406 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99836 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99842 * 180.02562 * 5 4 3 8 8 C 1.46495 * 119.99718 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47210 * 324.99916 * 8 7 5 10 10 C 1.52999 * 109.47389 * 85.00140 * 8 7 5 11 11 C 1.53006 * 109.46696 * 204.99517 * 8 7 5 12 12 C 1.52997 * 109.46841 * 65.00499 * 11 8 7 13 13 H 1.09005 * 109.47159 * 54.99606 * 12 11 8 14 14 C 1.52999 * 109.47264 * 174.99605 * 12 11 8 15 15 N 1.46498 * 109.47167 * 294.99436 * 12 11 8 16 16 C 1.36935 * 120.00239 * 154.99975 * 15 12 11 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 12 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.39764 * 117.70735 * 0.27596 * 4 3 2 25 25 N 1.31892 * 119.65629 * 359.43880 * 24 4 3 26 26 N 1.28280 * 122.32832 * 0.58678 * 25 24 4 27 27 H 1.08992 * 109.47112 * 89.99725 * 1 2 3 28 28 H 1.08999 * 109.47226 * 210.00309 * 1 2 3 29 29 H 1.09005 * 109.46945 * 330.00259 * 1 2 3 30 30 H 1.08000 * 121.08992 * 359.95607 * 3 2 1 31 31 H 0.96997 * 119.99976 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47086 * 299.99744 * 10 8 7 33 33 H 1.09007 * 109.47428 * 59.99518 * 10 8 7 34 34 H 1.09001 * 109.47632 * 179.97438 * 10 8 7 35 35 H 1.08996 * 109.47489 * 304.99916 * 11 8 7 36 36 H 1.09001 * 109.46720 * 184.99882 * 11 8 7 37 37 H 1.08994 * 109.47214 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47102 * 299.99987 * 14 12 11 39 39 H 1.09005 * 109.47033 * 59.99923 * 14 12 11 40 40 H 0.97004 * 119.99747 * 335.00715 * 15 12 11 41 41 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 42 42 H 1.07998 * 120.17228 * 179.70800 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1459 0.0006 5 6 4.4141 2.3835 0.0000 6 8 3.8689 3.4694 -0.0004 7 7 5.7596 2.3048 0.0001 8 6 6.5648 3.5286 0.0001 9 1 6.0613 4.2948 -0.5893 10 6 6.7401 4.0238 1.4371 11 6 7.9373 3.2360 -0.6094 12 6 7.7712 2.8609 -2.0834 13 1 7.2255 3.6505 -2.6000 14 6 9.1498 2.6899 -2.7246 15 7 7.0256 1.6040 -2.1864 16 6 6.3165 1.3197 -3.3228 17 1 6.3073 2.0218 -4.1435 18 6 5.6096 0.1291 -3.4202 19 7 5.6252 -0.7290 -2.4223 20 14 4.6429 -0.2591 -4.9708 21 1 3.2573 0.2569 -4.8324 22 1 5.2975 0.3866 -6.1369 23 1 4.6054 -1.7294 -5.1757 24 6 4.2017 -0.1155 -0.0049 25 7 3.4483 -1.1980 0.0009 26 7 2.1668 -1.1420 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6782 2.1452 -0.0007 31 1 6.1947 1.4379 0.0008 32 1 5.7623 4.2322 1.8714 33 1 7.2436 3.2575 2.0266 34 1 7.3396 4.9341 1.4372 35 1 8.4037 2.4089 -0.0743 36 1 8.5670 4.1221 -0.5288 37 1 9.0314 2.4222 -3.7746 38 1 9.7046 3.6250 -2.6480 39 1 9.6954 1.9003 -2.2080 40 1 7.0340 0.9733 -1.4494 41 1 6.1275 -0.5277 -1.6172 42 1 5.2781 -0.2033 -0.0094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134204158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:29 Heat of formation + Delta-G solvation = 12.429057 kcal Electronic energy + Delta-G solvation = -24700.829026 eV Core-core repulsion = 21295.078869 eV Total energy + Delta-G solvation = -3405.750156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19851 -40.70432 -38.52598 -36.09094 -35.07076 -34.55840 -33.87994 -31.92800 -30.03770 -29.16823 -27.69582 -26.26058 -25.55220 -24.76682 -22.59005 -21.90437 -21.36422 -19.49694 -19.07860 -18.40392 -17.35775 -17.16540 -16.73644 -16.38716 -15.92081 -15.84362 -15.61201 -15.39754 -14.62230 -14.53193 -14.44753 -14.28860 -13.74020 -13.55884 -13.43036 -13.22601 -13.14887 -12.91189 -12.81704 -12.58180 -12.22994 -12.01892 -11.90838 -11.78688 -11.67454 -11.45082 -11.22034 -11.15123 -10.94474 -10.62828 -10.56659 -10.06250 -8.94029 -8.19870 -5.16257 -0.64087 -0.03508 1.50837 1.56005 1.70646 1.71806 2.06912 2.65573 2.67562 3.07970 3.33667 3.48343 3.50412 3.61779 3.74163 3.83494 3.85618 4.05784 4.22483 4.28063 4.43912 4.47328 4.58867 4.72741 4.75829 4.76568 4.78841 4.81520 4.93748 4.98764 5.03267 5.06341 5.08741 5.30281 5.31294 5.31930 5.50695 5.56427 5.70667 6.37663 6.63196 7.04699 7.19547 7.73200 8.06230 8.18955 9.25899 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.007902 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.069472 B = 3542.455044 C = 5169.547626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.051 3.949 3 C -0.066 4.066 4 C -0.146 4.146 5 C 0.571 3.429 6 O -0.570 6.570 7 N -0.684 5.684 8 C 0.145 3.855 9 H 0.064 0.936 10 C -0.153 4.153 11 C -0.122 4.122 12 C 0.166 3.834 13 H 0.030 0.970 14 C -0.153 4.153 15 N -0.731 5.731 16 C -0.313 4.313 17 H 0.047 0.953 18 C -0.083 4.083 19 N -0.945 5.945 20 Si 1.101 2.899 21 H -0.305 1.305 22 H -0.282 1.282 23 H -0.297 1.297 24 C 0.109 3.891 25 N -0.254 5.254 26 N -0.258 5.258 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.174 0.826 31 H 0.399 0.601 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.358 0.642 41 H 0.249 0.751 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 7.930 8.768 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.096 4.096 4 C -0.160 4.160 5 C 0.356 3.644 6 O -0.451 6.451 7 N -0.334 5.334 8 C 0.041 3.959 9 H 0.082 0.918 10 C -0.211 4.211 11 C -0.160 4.160 12 C 0.058 3.942 13 H 0.048 0.952 14 C -0.213 4.213 15 N -0.376 5.376 16 C -0.445 4.445 17 H 0.066 0.934 18 C -0.278 4.278 19 N -0.593 5.593 20 Si 0.932 3.068 21 H -0.233 1.233 22 H -0.207 1.207 23 H -0.224 1.224 24 C -0.057 4.057 25 N -0.094 5.094 26 N -0.101 5.101 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.125 0.875 30 H 0.191 0.809 31 H 0.237 0.763 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.193 0.807 41 H 0.061 0.939 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.032 6.081 7.824 10.115 hybrid contribution 1.406 1.785 0.195 2.280 sum -0.626 7.866 8.018 11.249 Atomic orbital electron populations 1.20802 0.83948 1.05625 1.04658 1.23489 1.01156 0.89161 0.95647 1.22653 0.92758 1.01285 0.92875 1.21336 0.96158 0.95191 1.03306 1.17874 0.83095 0.87422 0.75963 1.90672 1.72597 1.29271 1.52597 1.45962 1.04837 1.10746 1.71860 1.21081 0.91341 0.85797 0.97636 0.91813 1.22122 1.01908 1.02577 0.94474 1.22173 0.95286 1.03910 0.94619 1.20457 0.91410 0.87602 0.94733 0.95161 1.22254 0.98039 1.01206 0.99812 1.42528 1.58550 1.19585 1.16917 1.20071 1.25076 1.03890 0.95473 0.93446 1.26179 1.02105 0.93751 1.05801 1.71170 1.45012 1.37122 1.06002 0.82895 0.74850 0.75288 0.73788 1.23299 1.20743 1.22401 1.24193 1.01999 0.88391 0.91105 1.72900 0.99280 1.27642 1.09528 1.72714 1.02281 1.26420 1.08731 0.89077 0.89088 0.87517 0.80878 0.76283 0.93869 0.91217 0.89080 0.90399 0.86719 0.95519 0.90984 0.93389 0.80744 0.93871 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 10.19 71.24 0.73 -1.24 16 2 C 0.05 1.67 6.86 42.62 0.29 1.96 16 3 C -0.07 -2.24 9.43 22.79 0.22 -2.03 16 4 C -0.15 -5.64 5.92 -19.83 -0.12 -5.75 16 5 C 0.57 22.01 7.77 86.87 0.67 22.68 16 6 O -0.57 -23.88 16.15 -3.76 -0.06 -23.94 16 7 N -0.68 -22.97 3.76 -445.14 -1.67 -24.64 16 8 C 0.15 4.12 2.57 44.99 0.12 4.23 16 9 H 0.06 2.13 7.58 -2.39 -0.02 2.12 16 10 C -0.15 -3.36 9.48 71.98 0.68 -2.67 16 11 C -0.12 -3.04 4.43 30.60 0.14 -2.91 16 12 C 0.17 5.71 2.89 44.99 0.13 5.84 16 13 H 0.03 1.16 8.08 -2.38 -0.02 1.14 16 14 C -0.15 -4.79 9.49 71.98 0.68 -4.11 16 15 N -0.73 -31.48 3.84 -322.94 -1.24 -32.72 16 16 C -0.31 -16.22 9.93 84.03 0.83 -15.39 16 17 H 0.05 2.57 7.83 -2.91 -0.02 2.54 16 18 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 19 N -0.94 -51.95 12.25 21.65 0.27 -51.69 16 20 Si 1.10 53.03 29.92 68.60 2.05 55.08 16 21 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 24 C 0.11 4.47 9.19 85.05 0.78 5.25 16 25 N -0.25 -11.13 11.49 -56.53 -0.65 -11.78 16 26 N -0.26 -10.31 11.40 -47.68 -0.54 -10.85 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 1.62 8.09 -2.38 -0.02 1.61 16 30 H 0.17 5.04 7.80 -2.91 -0.02 5.02 16 31 H 0.40 13.38 4.67 -92.71 -0.43 12.95 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.36 15.34 4.54 -92.71 -0.42 14.92 16 41 H 0.25 12.97 4.80 -92.71 -0.44 12.53 16 42 H 0.16 6.58 4.82 -2.91 -0.01 6.57 16 Total: -1.00 -68.22 343.41 4.28 -63.93 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.51 Total: 34.77 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.62 Total: 1.84 kcal Atomic # 7 Polarization: -127.84 SS G_CDS: -3.84 Total: -131.68 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 2.05 Total: 55.08 kcal Total: -68.22 4.28 -63.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134204158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.363 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds