Wall clock time and date at job start Tue Mar 31 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38821 * 120.41700 * 2 1 4 4 C 1.38776 * 118.50636 * 179.97438 * 3 2 1 5 5 N 1.32124 * 119.16631 * 359.97438 * 4 3 2 6 6 C 1.32451 * 120.76730 * 359.97438 * 5 4 3 7 7 C 1.48536 * 119.18404 * 180.02562 * 6 5 4 8 8 O 1.21471 * 119.99820 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00341 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00443 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.46559 * 35.00333 * 10 9 7 12 12 C 1.52998 * 109.47209 * 275.00239 * 10 9 7 13 13 C 1.52993 * 109.47327 * 154.99915 * 10 9 7 14 14 C 1.53006 * 109.47339 * 295.00435 * 13 10 9 15 15 H 1.08996 * 109.46714 * 304.99623 * 14 13 10 16 16 C 1.52997 * 109.47318 * 184.99900 * 14 13 10 17 17 N 1.46501 * 109.47358 * 64.99991 * 14 13 10 18 18 C 1.36934 * 120.00290 * 205.00612 * 17 14 13 19 19 H 1.08007 * 119.99753 * 359.97438 * 18 17 14 20 20 C 1.38810 * 120.00184 * 179.97438 * 18 17 14 21 21 N 1.31617 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99760 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47023 * 89.99998 * 22 20 18 24 24 H 1.48509 * 109.46760 * 210.00163 * 22 20 18 25 25 H 1.48496 * 109.47219 * 329.99794 * 22 20 18 26 26 N 1.32098 * 120.41813 * 179.71289 * 2 1 3 27 27 H 1.09001 * 109.46953 * 90.00238 * 1 2 3 28 28 H 1.09000 * 109.47318 * 209.99836 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.00466 * 1 2 3 30 30 H 1.08003 * 120.74516 * 359.94910 * 3 2 1 31 31 H 1.08004 * 120.41681 * 179.97438 * 4 3 2 32 32 H 0.97009 * 119.99785 * 0.02562 * 9 7 6 33 33 H 1.08992 * 109.46958 * 179.97438 * 12 10 9 34 34 H 1.08998 * 109.47053 * 299.99889 * 12 10 9 35 35 H 1.08998 * 109.47063 * 59.99767 * 12 10 9 36 36 H 1.08999 * 109.47388 * 54.99925 * 13 10 9 37 37 H 1.08996 * 109.47647 * 174.99970 * 13 10 9 38 38 H 1.08997 * 109.47667 * 179.97438 * 16 14 13 39 39 H 1.09002 * 109.47399 * 299.99730 * 16 14 13 40 40 H 1.09001 * 109.47494 * 59.99583 * 16 14 13 41 41 H 0.96999 * 119.99602 * 24.99912 * 17 14 13 42 42 H 0.97001 * 119.99986 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1509 0.0005 5 7 4.2020 -0.0237 0.0016 6 6 3.5005 -1.1472 0.0026 7 6 4.2170 -2.4483 0.0043 8 8 3.5884 -3.4878 0.0047 9 7 5.5645 -2.4757 0.0053 10 6 6.2711 -3.7590 0.0075 11 1 5.7093 -4.4841 -0.5815 12 6 6.4059 -4.2645 1.4453 13 6 7.6627 -3.5760 -0.6013 14 6 7.5277 -3.1908 -2.0759 15 1 6.9221 -3.9358 -2.5919 16 6 8.9159 -3.1296 -2.7162 17 7 6.8832 -1.8794 -2.1811 18 6 6.1995 -1.5417 -3.3184 19 1 6.1357 -2.2421 -4.1382 20 6 5.5884 -0.2994 -3.4178 21 7 5.6656 0.5539 -2.4187 22 14 4.6562 0.1615 -4.9697 23 1 3.2358 -0.2499 -4.8345 24 1 4.7290 1.6308 -5.1729 25 1 5.2631 -0.5300 -6.1354 26 7 2.1759 -1.1391 0.0057 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6890 2.1432 -0.0008 31 1 4.1744 2.0635 0.0001 32 1 6.0665 -1.6456 0.0053 33 1 6.9313 -5.2195 1.4469 34 1 6.9676 -3.5394 2.0342 35 1 5.4145 -4.3949 1.8790 36 1 8.1923 -2.7874 -0.0669 37 1 8.2209 -4.5086 -0.5190 38 1 8.8197 -2.8556 -3.7668 39 1 9.5216 -2.3846 -2.2002 40 1 9.3955 -4.1053 -2.6380 41 1 6.9407 -1.2504 -1.4450 42 1 5.2383 1.4219 -2.4881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134244027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:43 Heat of formation + Delta-G solvation = 28.079007 kcal Electronic energy + Delta-G solvation = -24674.388825 eV Core-core repulsion = 21269.317301 eV Total energy + Delta-G solvation = -3405.071523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.64348 -38.89590 -36.67670 -34.20960 -33.96307 -32.21413 -32.06654 -30.49910 -28.51202 -28.13134 -26.29959 -24.95177 -23.59012 -22.64458 -21.31631 -20.16173 -19.67056 -17.29886 -17.20371 -17.04738 -15.65748 -15.39576 -14.97883 -14.75869 -14.44475 -13.97994 -13.73251 -13.62163 -13.23745 -12.95059 -12.89010 -12.68270 -12.44387 -12.19547 -12.07508 -11.85141 -11.69543 -11.61091 -10.97580 -10.83296 -10.69866 -10.64329 -10.33157 -10.21665 -10.04564 -9.85171 -9.61384 -9.33626 -9.10968 -8.89215 -8.67424 -8.30029 -6.85373 -5.69302 -2.95318 1.03636 1.63124 3.30572 3.41876 3.46712 3.49813 3.50742 4.45800 4.58036 4.61156 4.69854 4.86863 5.15016 5.26534 5.44259 5.46225 5.55230 5.58810 5.62139 5.64281 5.72744 5.73618 5.93819 5.99840 6.02852 6.06443 6.15450 6.19543 6.29579 6.40765 6.45857 6.60157 6.66284 6.79376 6.90768 7.10268 7.20458 7.51028 7.76107 8.14830 8.44628 8.59945 8.92666 9.57585 10.13501 10.49182 11.48668 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.008054 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.335363 B = 3475.874694 C = 5119.159758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.155 3.845 3 C -0.225 4.225 4 C 0.163 3.837 5 N -0.432 5.432 6 C 0.291 3.709 7 C 0.596 3.404 8 O -0.535 6.535 9 N -0.674 5.674 10 C 0.149 3.851 11 H 0.084 0.916 12 C -0.163 4.163 13 C -0.133 4.133 14 C 0.168 3.832 15 H 0.047 0.953 16 C -0.162 4.162 17 N -0.714 5.714 18 C -0.230 4.230 19 H 0.064 0.936 20 C -0.007 4.007 21 N -0.905 5.905 22 Si 0.889 3.111 23 H -0.296 1.296 24 H -0.293 1.293 25 H -0.284 1.284 26 N -0.481 5.481 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.416 0.584 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.381 0.619 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -0.313 8.555 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.007 3.993 3 C -0.248 4.248 4 C -0.004 4.004 5 N -0.147 5.147 6 C 0.021 3.979 7 C 0.378 3.622 8 O -0.410 6.410 9 N -0.328 5.328 10 C 0.044 3.956 11 H 0.102 0.898 12 C -0.221 4.221 13 C -0.171 4.171 14 C 0.058 3.942 15 H 0.065 0.935 16 C -0.223 4.223 17 N -0.358 5.358 18 C -0.362 4.362 19 H 0.082 0.918 20 C -0.204 4.204 21 N -0.553 5.553 22 Si 0.721 3.279 23 H -0.224 1.224 24 H -0.220 1.220 25 H -0.210 1.210 26 N -0.197 5.197 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.159 0.841 31 H 0.184 0.816 32 H 0.256 0.744 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.217 0.783 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.895 -1.947 8.397 8.826 hybrid contribution -0.740 1.997 -1.109 2.401 sum -2.635 0.050 7.288 7.750 Atomic orbital electron populations 1.20708 0.88271 1.03467 1.03379 1.21606 0.97330 0.88161 0.92203 1.22887 0.97135 0.99980 1.04775 1.23118 0.91236 0.96510 0.89523 1.68392 1.40116 0.97967 1.08254 1.22799 0.86878 0.93543 0.94717 1.17104 0.82465 0.85725 0.76871 1.90702 1.67327 1.32574 1.50400 1.45775 1.05131 1.10065 1.71805 1.20879 0.93009 0.86018 0.95673 0.89763 1.22212 1.02054 1.00808 0.97033 1.22208 0.95213 1.01786 0.97932 1.20288 0.92330 0.89695 0.91887 0.93528 1.22414 0.99118 0.99026 1.01703 1.42458 1.61987 1.12890 1.18466 1.19104 1.24730 0.98346 0.93985 0.91811 1.24577 1.01486 0.97154 0.97177 1.69710 1.48394 1.07429 1.29798 0.86464 0.80118 0.77261 0.84063 1.22382 1.21994 1.20968 1.67968 1.09306 1.30217 1.12236 0.90091 0.90179 0.90527 0.84111 0.81562 0.74417 0.91955 0.92673 0.92376 0.91607 0.90685 0.92949 0.93607 0.94661 0.78347 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.22 36.01 0.37 -0.85 16 2 C 0.15 2.59 6.82 -82.26 -0.56 2.03 16 3 C -0.23 -3.38 9.87 -39.17 -0.39 -3.76 16 4 C 0.16 2.79 11.25 -17.23 -0.19 2.59 16 5 N -0.43 -8.77 8.54 -11.12 -0.09 -8.87 16 6 C 0.29 6.33 7.59 -157.07 -1.19 5.13 16 7 C 0.60 13.27 7.82 -12.01 -0.09 13.18 16 8 O -0.53 -12.97 16.53 5.39 0.09 -12.89 16 9 N -0.67 -13.14 3.79 -54.53 -0.21 -13.34 16 10 C 0.15 2.50 2.57 -67.94 -0.17 2.33 16 11 H 0.08 1.58 7.58 -51.92 -0.39 1.19 16 12 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 13 C -0.13 -2.04 4.43 -26.73 -0.12 -2.15 16 14 C 0.17 3.19 2.89 -67.93 -0.20 2.99 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 17 N -0.71 -16.45 3.84 -53.42 -0.21 -16.65 16 18 C -0.23 -6.12 9.93 -15.06 -0.15 -6.27 16 19 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.91 -23.97 11.97 55.49 0.66 -23.30 16 22 Si 0.89 22.33 29.55 -169.99 -5.02 17.31 16 23 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 N -0.48 -10.02 10.07 -7.37 -0.07 -10.09 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.17 2.42 8.06 -52.48 -0.42 2.00 16 32 H 0.42 8.32 5.82 -40.82 -0.24 8.08 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.38 9.05 5.71 -40.82 -0.23 8.82 16 42 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -31.35 352.43 -7.95 -39.31 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.32 Total: 12.68 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -2.09 Total: 10.54 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: 0.08 Total: -72.26 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.35 -7.95 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134244027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.384 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds