Wall clock time and date at job start Tue Mar 31 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38821 * 120.41700 * 2 1 4 4 C 1.38776 * 118.50636 * 179.97438 * 3 2 1 5 5 N 1.32124 * 119.16631 * 359.97438 * 4 3 2 6 6 C 1.32451 * 120.76730 * 359.97438 * 5 4 3 7 7 C 1.48536 * 119.18404 * 180.02562 * 6 5 4 8 8 O 1.21471 * 119.99820 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00341 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00443 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.46559 * 35.00333 * 10 9 7 12 12 C 1.52998 * 109.47209 * 275.00239 * 10 9 7 13 13 C 1.52993 * 109.47327 * 154.99915 * 10 9 7 14 14 C 1.53006 * 109.47339 * 295.00435 * 13 10 9 15 15 H 1.08996 * 109.46714 * 304.99623 * 14 13 10 16 16 C 1.52997 * 109.47318 * 184.99900 * 14 13 10 17 17 N 1.46501 * 109.47358 * 64.99991 * 14 13 10 18 18 C 1.36934 * 120.00290 * 205.00612 * 17 14 13 19 19 H 1.08007 * 119.99753 * 359.97438 * 18 17 14 20 20 C 1.38810 * 120.00184 * 179.97438 * 18 17 14 21 21 N 1.31617 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99760 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47023 * 89.99998 * 22 20 18 24 24 H 1.48509 * 109.46760 * 210.00163 * 22 20 18 25 25 H 1.48496 * 109.47219 * 329.99794 * 22 20 18 26 26 N 1.32098 * 120.41813 * 179.71289 * 2 1 3 27 27 H 1.09001 * 109.46953 * 90.00238 * 1 2 3 28 28 H 1.09000 * 109.47318 * 209.99836 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.00466 * 1 2 3 30 30 H 1.08003 * 120.74516 * 359.94910 * 3 2 1 31 31 H 1.08004 * 120.41681 * 179.97438 * 4 3 2 32 32 H 0.97009 * 119.99785 * 0.02562 * 9 7 6 33 33 H 1.08992 * 109.46958 * 179.97438 * 12 10 9 34 34 H 1.08998 * 109.47053 * 299.99889 * 12 10 9 35 35 H 1.08998 * 109.47063 * 59.99767 * 12 10 9 36 36 H 1.08999 * 109.47388 * 54.99925 * 13 10 9 37 37 H 1.08996 * 109.47647 * 174.99970 * 13 10 9 38 38 H 1.08997 * 109.47667 * 179.97438 * 16 14 13 39 39 H 1.09002 * 109.47399 * 299.99730 * 16 14 13 40 40 H 1.09001 * 109.47494 * 59.99583 * 16 14 13 41 41 H 0.96999 * 119.99602 * 24.99912 * 17 14 13 42 42 H 0.97001 * 119.99986 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1509 0.0005 5 7 4.2020 -0.0237 0.0016 6 6 3.5005 -1.1472 0.0026 7 6 4.2170 -2.4483 0.0043 8 8 3.5884 -3.4878 0.0047 9 7 5.5645 -2.4757 0.0053 10 6 6.2711 -3.7590 0.0075 11 1 5.7093 -4.4841 -0.5815 12 6 6.4059 -4.2645 1.4453 13 6 7.6627 -3.5760 -0.6013 14 6 7.5277 -3.1908 -2.0759 15 1 6.9221 -3.9358 -2.5919 16 6 8.9159 -3.1296 -2.7162 17 7 6.8832 -1.8794 -2.1811 18 6 6.1995 -1.5417 -3.3184 19 1 6.1357 -2.2421 -4.1382 20 6 5.5884 -0.2994 -3.4178 21 7 5.6656 0.5539 -2.4187 22 14 4.6562 0.1615 -4.9697 23 1 3.2358 -0.2499 -4.8345 24 1 4.7290 1.6308 -5.1729 25 1 5.2631 -0.5300 -6.1354 26 7 2.1759 -1.1391 0.0057 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6890 2.1432 -0.0008 31 1 4.1744 2.0635 0.0001 32 1 6.0665 -1.6456 0.0053 33 1 6.9313 -5.2195 1.4469 34 1 6.9676 -3.5394 2.0342 35 1 5.4145 -4.3949 1.8790 36 1 8.1923 -2.7874 -0.0669 37 1 8.2209 -4.5086 -0.5190 38 1 8.8197 -2.8556 -3.7668 39 1 9.5216 -2.3846 -2.2002 40 1 9.3955 -4.1053 -2.6380 41 1 6.9407 -1.2504 -1.4450 42 1 5.2383 1.4219 -2.4881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134244027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:42 Heat of formation + Delta-G solvation = 7.656704 kcal Electronic energy + Delta-G solvation = -24675.274402 eV Core-core repulsion = 21269.317301 eV Total energy + Delta-G solvation = -3405.957101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05146 -40.43122 -38.26675 -35.81887 -35.35407 -33.93076 -33.51903 -31.99658 -30.20114 -29.30020 -27.59603 -26.39318 -25.51717 -23.93609 -22.72141 -21.67176 -21.21392 -19.06613 -18.77077 -18.55041 -17.16841 -16.64550 -16.60406 -16.44607 -15.85612 -15.56930 -15.42410 -15.16708 -14.74884 -14.29680 -14.19535 -14.05454 -13.70665 -13.56241 -13.30107 -13.20493 -13.14049 -12.94343 -12.79137 -12.60467 -12.29302 -12.15153 -12.03702 -11.71366 -11.56549 -11.45525 -11.38952 -10.95524 -10.84890 -10.40843 -10.08849 -9.85952 -8.74051 -7.73983 -4.97406 -0.36501 0.31047 1.37588 1.41301 1.45578 1.75615 2.05791 2.58901 3.02374 3.23121 3.34554 3.53559 3.67601 3.83109 4.03346 4.11445 4.18481 4.22712 4.37657 4.44144 4.57949 4.65514 4.70171 4.72475 4.85098 4.85845 4.89126 4.93024 5.08063 5.10339 5.14743 5.17849 5.36800 5.43711 5.53155 5.63318 5.64737 5.72915 6.18418 6.43219 6.57715 7.13694 7.34272 7.52224 8.25690 8.53072 9.42493 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.008054 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.335363 B = 3475.874694 C = 5119.159758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.136 3.864 3 C -0.201 4.201 4 C 0.142 3.858 5 N -0.449 5.449 6 C 0.259 3.741 7 C 0.584 3.416 8 O -0.572 6.572 9 N -0.665 5.665 10 C 0.142 3.858 11 H 0.058 0.942 12 C -0.151 4.151 13 C -0.118 4.118 14 C 0.160 3.840 15 H 0.026 0.974 16 C -0.151 4.151 17 N -0.718 5.718 18 C -0.239 4.239 19 H 0.047 0.953 20 C -0.043 4.043 21 N -0.905 5.905 22 Si 0.928 3.072 23 H -0.313 1.313 24 H -0.289 1.289 25 H -0.285 1.285 26 N -0.515 5.515 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.191 0.809 31 H 0.190 0.810 32 H 0.414 0.586 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.026 0.974 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.377 0.623 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 0.665 9.491 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 C -0.222 4.222 4 C -0.024 4.024 5 N -0.165 5.165 6 C -0.011 4.011 7 C 0.367 3.633 8 O -0.450 6.450 9 N -0.317 5.317 10 C 0.038 3.962 11 H 0.077 0.923 12 C -0.209 4.209 13 C -0.156 4.156 14 C 0.051 3.949 15 H 0.044 0.956 16 C -0.211 4.211 17 N -0.361 5.361 18 C -0.372 4.372 19 H 0.066 0.934 20 C -0.239 4.239 21 N -0.554 5.554 22 Si 0.761 3.239 23 H -0.242 1.242 24 H -0.215 1.215 25 H -0.211 1.211 26 N -0.232 5.232 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.208 0.792 31 H 0.207 0.793 32 H 0.253 0.747 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.212 0.788 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.393 -0.968 9.337 9.490 hybrid contribution -0.934 1.726 -1.400 2.411 sum -2.327 0.757 7.937 8.305 Atomic orbital electron populations 1.20852 0.84997 1.05273 1.04232 1.22490 0.99487 0.87775 0.91305 1.23380 0.96306 1.01409 1.01137 1.23686 0.92841 0.96259 0.89595 1.68330 1.40760 0.98580 1.08866 1.22698 0.87558 0.93720 0.97159 1.17481 0.83242 0.85944 0.76619 1.90649 1.68088 1.33772 1.52522 1.45857 1.04435 1.10924 1.70441 1.21111 0.93154 0.84424 0.97520 0.92344 1.22111 1.01564 1.02631 0.94629 1.22132 0.94605 1.04010 0.94862 1.20509 0.92522 0.87305 0.94557 0.95617 1.22248 0.98004 1.01067 0.99788 1.42468 1.62141 1.14297 1.17217 1.19143 1.25202 0.98083 0.94747 0.93444 1.24968 1.02555 0.97660 0.98742 1.69763 1.48545 1.07204 1.29839 0.85858 0.78318 0.77019 0.82697 1.24219 1.21524 1.21093 1.67966 1.09270 1.32656 1.13334 0.89479 0.90653 0.86491 0.79162 0.79285 0.74694 0.88895 0.91173 0.94409 0.90402 0.86790 0.95442 0.93239 0.91193 0.78813 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 10.22 71.24 0.73 -1.37 16 2 C 0.14 4.38 6.82 42.66 0.29 4.68 16 3 C -0.20 -5.50 9.87 22.54 0.22 -5.27 16 4 C 0.14 4.67 11.25 84.78 0.95 5.63 16 5 N -0.45 -18.39 8.54 -189.10 -1.61 -20.00 16 6 C 0.26 11.59 7.59 137.68 1.05 12.63 16 7 C 0.58 27.14 7.82 86.99 0.68 27.82 16 8 O -0.57 -29.25 16.53 -3.62 -0.06 -29.31 16 9 N -0.66 -26.49 3.79 -444.75 -1.68 -28.17 16 10 C 0.14 4.72 2.57 44.99 0.12 4.84 16 11 H 0.06 2.26 7.58 -2.38 -0.02 2.24 16 12 C -0.15 -3.98 9.48 71.98 0.68 -3.30 16 13 C -0.12 -3.37 4.43 30.59 0.14 -3.24 16 14 C 0.16 5.97 2.89 44.99 0.13 6.10 16 15 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 16 C -0.15 -5.01 9.49 71.98 0.68 -4.32 16 17 N -0.72 -33.35 3.84 -322.94 -1.24 -34.59 16 18 C -0.24 -12.97 9.93 84.03 0.83 -12.13 16 19 H 0.05 2.68 7.83 -2.91 -0.02 2.65 16 20 C -0.04 -2.36 5.50 84.86 0.47 -1.89 16 21 N -0.91 -47.90 11.97 21.65 0.26 -47.65 16 22 Si 0.93 46.32 29.55 68.60 2.03 48.35 16 23 H -0.31 -16.40 7.11 99.48 0.71 -15.69 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 26 N -0.51 -21.87 10.07 -177.24 -1.78 -23.65 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.12 1.58 8.10 -2.39 -0.02 1.56 16 30 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 32 H 0.41 16.81 5.82 -92.70 -0.54 16.27 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.38 17.99 5.71 -92.71 -0.53 17.46 16 42 H 0.25 12.74 8.31 -92.71 -0.77 11.97 16 Total: -1.00 -71.73 352.43 2.83 -68.89 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.04 Total: 35.97 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 6.97 Total: 30.15 kcal Atomic # 7 Polarization: -148.00 SS G_CDS: -6.06 Total: -154.06 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -71.73 2.83 -68.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134244027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.551 kcal (2) G-P(sol) polarization free energy of solvation -71.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds