Wall clock time and date at job start Tue Mar 31 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38570 * 119.97016 * 2 1 4 4 C 1.38824 * 118.07464 * 179.74681 * 3 2 1 5 5 C 1.39724 * 117.89549 * 0.52784 * 4 3 2 6 6 C 1.48153 * 120.18248 * 179.73661 * 5 4 3 7 7 O 1.21515 * 119.99798 * 359.72688 * 6 5 4 8 8 N 1.34778 * 119.99880 * 179.72574 * 6 5 4 9 9 C 1.46495 * 119.99718 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47210 * 324.99916 * 9 8 6 11 11 C 1.52999 * 109.47389 * 85.00140 * 9 8 6 12 12 C 1.53006 * 109.46696 * 204.99517 * 9 8 6 13 13 C 1.52997 * 109.46841 * 65.00499 * 12 9 8 14 14 H 1.09005 * 109.47159 * 54.99606 * 13 12 9 15 15 C 1.52999 * 109.47264 * 174.99605 * 13 12 9 16 16 N 1.46498 * 109.47167 * 294.99436 * 13 12 9 17 17 C 1.36935 * 120.00239 * 154.99975 * 16 13 12 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 N 1.32780 * 119.63008 * 359.45989 * 5 4 3 26 26 N 1.28354 * 122.03343 * 0.28199 * 25 5 4 27 27 H 1.08999 * 109.47625 * 269.97928 * 1 2 3 28 28 H 1.09000 * 109.47066 * 29.98193 * 1 2 3 29 29 H 1.09004 * 109.47083 * 149.97959 * 1 2 3 30 30 H 1.08007 * 120.96259 * 0.02562 * 3 2 1 31 31 H 1.08002 * 121.05415 * 180.28750 * 4 3 2 32 32 H 0.96997 * 119.99976 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47086 * 299.99744 * 11 9 8 34 34 H 1.09007 * 109.47428 * 59.99518 * 11 9 8 35 35 H 1.09001 * 109.47632 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47489 * 304.99916 * 12 9 8 37 37 H 1.09001 * 109.46720 * 184.99882 * 12 9 8 38 38 H 1.09005 * 109.47033 * 59.99923 * 15 13 12 39 39 H 1.08994 * 109.47214 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47102 * 299.99987 * 15 13 12 41 41 H 0.97004 * 119.99747 * 335.00715 * 16 13 12 42 42 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1991 1.2004 0.0000 4 6 3.5866 1.1545 0.0054 5 6 4.1992 -0.1013 -0.0008 6 6 5.6768 -0.2093 -0.0014 7 8 6.3594 0.7960 -0.0014 8 7 6.2637 -1.4226 -0.0018 9 6 7.7248 -1.5293 -0.0018 10 1 8.1485 -0.7160 -0.5909 11 6 8.2426 -1.4417 1.4352 12 6 8.1381 -2.8702 -0.6119 13 6 7.7296 -2.9074 -2.0859 14 1 8.1532 -2.0459 -2.6021 15 6 8.2521 -4.1942 -2.7276 16 7 6.2688 -2.8687 -2.1889 17 6 5.6750 -2.3876 -3.3251 18 1 6.2836 -2.0371 -4.1456 19 6 4.2908 -2.3504 -3.4226 20 7 3.5490 -2.7826 -2.4248 21 14 3.4808 -1.6948 -4.9729 22 1 2.0045 -1.7677 -4.8289 23 1 3.8883 -0.2826 -5.1851 24 1 3.9056 -2.5129 -6.1371 25 7 3.4496 -1.1973 -0.0007 26 7 2.1671 -1.1450 -0.0004 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6744 2.1444 0.0004 31 1 4.1740 2.0608 0.0103 32 1 5.7188 -2.2250 -0.0014 33 1 7.9481 -0.4865 1.8699 34 1 7.8188 -2.2551 2.0244 35 1 9.3296 -1.5216 1.4353 36 1 7.6431 -3.6808 -0.0771 37 1 9.2187 -2.9884 -0.5313 38 1 7.8285 -5.0557 -2.2114 39 1 7.9607 -4.2209 -3.7776 40 1 9.3390 -4.2231 -2.6510 41 1 5.7221 -3.1837 -1.4521 42 1 3.9696 -3.1234 -1.6199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134333924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:36 Heat of formation + Delta-G solvation = 11.809564 kcal Electronic energy + Delta-G solvation = -24688.207761 eV Core-core repulsion = 21282.430742 eV Total energy + Delta-G solvation = -3405.777019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05391 -40.58925 -38.45808 -35.99962 -35.00214 -34.07833 -33.93514 -32.04728 -30.00299 -29.14412 -27.67584 -26.03539 -25.37059 -24.40631 -22.79421 -21.80534 -21.50687 -19.34757 -19.15665 -18.30019 -17.18963 -16.72635 -16.55469 -16.37819 -15.91540 -15.75823 -15.47400 -15.37439 -14.63091 -14.48754 -14.39639 -14.04822 -13.64069 -13.54123 -13.37472 -13.18910 -13.09323 -12.89825 -12.75435 -12.55937 -12.34202 -12.20930 -11.90749 -11.80685 -11.62515 -11.17023 -11.06953 -11.03009 -10.84905 -10.63708 -10.49121 -9.96939 -8.83739 -8.07160 -5.03480 -0.40359 -0.04327 1.49895 1.57489 1.70051 1.73832 2.15102 2.71982 2.79479 3.00277 3.51905 3.58849 3.65088 3.73963 3.83141 3.92454 4.05972 4.07835 4.13541 4.27892 4.47396 4.59531 4.61339 4.74567 4.76249 4.78637 4.81245 4.83184 4.98962 5.03426 5.03695 5.05936 5.14087 5.29099 5.32913 5.40332 5.53647 5.60785 5.76681 6.47140 6.77376 7.11347 7.34594 7.80796 8.19462 8.32451 9.39916 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.007922 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.171158 B = 3533.589190 C = 5135.549641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.065 3.935 3 C -0.116 4.116 4 C -0.083 4.083 5 C -0.014 4.014 6 C 0.579 3.421 7 O -0.577 6.577 8 N -0.674 5.674 9 C 0.142 3.858 10 H 0.063 0.937 11 C -0.151 4.151 12 C -0.121 4.121 13 C 0.166 3.834 14 H 0.027 0.973 15 C -0.152 4.152 16 N -0.731 5.731 17 C -0.338 4.338 18 H 0.041 0.959 19 C -0.084 4.084 20 N -0.931 5.931 21 Si 1.103 2.897 22 H -0.293 1.293 23 H -0.298 1.298 24 H -0.286 1.286 25 N -0.188 5.188 26 N -0.256 5.256 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.200 0.800 31 H 0.167 0.833 32 H 0.405 0.595 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.045 0.955 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.359 0.641 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 5.687 9.035 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.112 4.112 5 C -0.160 4.160 6 C 0.363 3.637 7 O -0.457 6.457 8 N -0.324 5.324 9 C 0.038 3.962 10 H 0.081 0.919 11 C -0.209 4.209 12 C -0.159 4.159 13 C 0.058 3.942 14 H 0.045 0.955 15 C -0.212 4.212 16 N -0.376 5.376 17 C -0.470 4.470 18 H 0.059 0.941 19 C -0.281 4.281 20 N -0.576 5.576 21 Si 0.933 3.067 22 H -0.220 1.220 23 H -0.226 1.226 24 H -0.213 1.213 25 N -0.034 5.034 26 N -0.101 5.101 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.217 0.783 31 H 0.184 0.816 32 H 0.243 0.757 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.193 0.807 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.134 5.071 8.116 9.571 hybrid contribution 1.175 0.651 0.252 1.366 sum 1.041 5.721 8.368 10.191 Atomic orbital electron populations 1.20817 0.84584 1.04933 1.04954 1.23814 1.01214 0.90446 0.92312 1.22671 0.93149 1.01253 0.97412 1.22583 0.96464 0.98302 0.93806 1.22895 0.96272 0.93486 1.03350 1.17719 0.85880 0.84139 0.75969 1.90657 1.64489 1.36927 1.53622 1.45958 1.08220 1.07597 1.70602 1.21102 0.78806 0.98637 0.97638 0.91913 1.22110 1.02642 1.01719 0.94428 1.22159 1.03438 0.95520 0.94797 1.20425 0.83845 0.95399 0.94529 0.95515 1.22252 1.00374 0.98791 0.99752 1.42484 1.01271 1.76809 1.17032 1.19930 0.92446 1.39060 0.95576 0.94108 1.26359 0.93327 1.02418 1.05986 1.70912 1.36706 1.44140 1.05806 0.82913 0.75118 0.75229 0.73422 1.21965 1.22592 1.21295 1.73170 1.00211 1.25887 1.04110 1.73060 1.00954 1.26077 1.09988 0.87553 0.87336 0.91211 0.78261 0.81586 0.75690 0.93841 0.91524 0.88881 0.90874 0.86675 0.93592 0.95551 0.90919 0.80691 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.01 10.19 71.23 0.73 -1.28 16 2 C 0.07 2.07 6.87 42.58 0.29 2.36 16 3 C -0.12 -3.14 9.86 22.49 0.22 -2.91 16 4 C -0.08 -2.79 9.73 22.77 0.22 -2.57 16 5 C -0.01 -0.57 6.83 42.00 0.29 -0.28 16 6 C 0.58 24.92 7.78 86.88 0.68 25.59 16 7 O -0.58 -26.04 16.06 -3.76 -0.06 -26.10 16 8 N -0.67 -26.48 3.79 -445.12 -1.69 -28.17 16 9 C 0.14 4.66 2.57 44.99 0.12 4.77 16 10 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 11 C -0.15 -3.86 9.48 71.98 0.68 -3.18 16 12 C -0.12 -3.56 4.43 30.60 0.14 -3.42 16 13 C 0.17 6.45 2.89 44.99 0.13 6.58 16 14 H 0.03 1.14 8.08 -2.38 -0.02 1.12 16 15 C -0.15 -5.29 9.49 71.98 0.68 -4.60 16 16 N -0.73 -35.31 3.84 -322.94 -1.24 -36.56 16 17 C -0.34 -19.03 9.93 84.03 0.83 -18.20 16 18 H 0.04 2.38 7.83 -2.91 -0.02 2.36 16 19 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 20 N -0.93 -55.01 12.90 21.65 0.28 -54.73 16 21 Si 1.10 54.49 29.92 68.60 2.05 56.54 16 22 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 N -0.19 -8.40 9.35 -48.48 -0.45 -8.85 16 26 N -0.26 -10.74 11.43 -47.54 -0.54 -11.29 16 27 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 1.58 8.09 -2.39 -0.02 1.56 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.17 4.95 7.72 -2.91 -0.02 4.93 16 32 H 0.41 16.80 5.87 -92.71 -0.54 16.25 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.36 17.82 4.54 -92.71 -0.42 17.40 16 42 H 0.26 15.15 6.20 -92.71 -0.58 14.57 16 Total: -1.00 -74.46 349.54 4.08 -70.38 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: 0.26 Total: 40.26 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.47 Total: -1.49 kcal Atomic # 7 Polarization: -135.94 SS G_CDS: -3.65 Total: -139.59 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 2.05 Total: 56.54 kcal Total: -74.46 4.08 -70.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134333924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.189 kcal (2) G-P(sol) polarization free energy of solvation -74.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds