Wall clock time and date at job start Tue Mar 31 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 5 5 C 1.42898 * 114.00186 * 269.99829 * 4 2 1 6 6 C 1.50703 * 109.47171 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99770 * 269.72826 * 6 5 4 8 8 C 1.38239 * 119.99901 * 179.76875 * 7 6 5 9 9 C 1.38240 * 119.99645 * 0.50240 * 8 7 6 10 10 C 1.38227 * 120.00205 * 359.74956 * 9 8 7 11 11 C 1.38232 * 119.99860 * 90.00268 * 6 5 4 12 12 C 1.50700 * 109.47191 * 239.99679 * 2 1 3 13 13 O 1.21284 * 120.00340 * 244.99786 * 12 2 1 14 14 N 1.34783 * 119.99696 * 65.00334 * 12 2 1 15 15 C 1.46499 * 119.99738 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.46744 * 179.97438 * 15 14 12 17 17 N 1.46506 * 109.46997 * 180.02562 * 16 15 14 18 18 C 1.36929 * 120.00058 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.38821 * 120.00165 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99852 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99729 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47553 * 89.99768 * 22 20 18 24 24 H 1.48496 * 109.47096 * 210.00028 * 22 20 18 25 25 H 1.48505 * 109.47070 * 329.99452 * 22 20 18 26 26 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 28 28 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 30 30 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 31 31 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.99843 * 180.23314 * 8 7 6 33 33 H 1.08002 * 119.99612 * 179.72381 * 9 8 7 34 34 H 1.07996 * 120.00251 * 179.97438 * 10 9 8 35 35 H 1.07998 * 120.00407 * 0.02562 * 11 6 5 36 36 H 0.96996 * 119.99850 * 359.97438 * 14 12 2 37 37 H 1.08994 * 109.47275 * 299.99798 * 15 14 12 38 38 H 1.09003 * 109.46911 * 59.99688 * 15 14 12 39 39 H 1.08994 * 109.47497 * 300.00185 * 16 15 14 40 40 H 1.08999 * 109.47096 * 60.00901 * 16 15 14 41 41 H 0.97007 * 119.99776 * 359.97438 * 17 16 15 42 42 H 0.97001 * 119.99615 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7015 -0.6282 3.4611 7 6 1.8030 -1.1954 4.3453 8 6 2.2627 -1.9434 5.4131 9 6 3.6213 -2.1155 5.6024 10 6 4.5198 -1.5440 4.7211 11 6 4.0599 -0.8002 3.6504 12 6 2.0324 -0.7105 -1.2304 13 8 2.6531 -1.7467 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2808 -0.8846 -3.6481 16 6 1.8754 -0.0947 -4.8942 17 7 2.3637 -0.7854 -6.0904 18 6 2.1194 -0.2610 -7.3315 19 1 1.5663 0.6616 -7.4286 20 6 2.5825 -0.9151 -8.4649 21 7 2.3472 -0.4113 -9.6578 22 14 3.5384 -2.5112 -8.2970 23 1 2.5955 -3.6581 -8.3235 24 1 4.4987 -2.6338 -9.4230 25 1 4.2811 -2.5104 -7.0110 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.9320 0.9514 2.0450 30 1 1.2538 0.6547 2.5589 31 1 0.7418 -1.0569 4.2002 32 1 1.5607 -2.3897 6.1018 33 1 3.9805 -2.6962 6.4391 34 1 5.5811 -1.6781 4.8692 35 1 4.7620 -0.3530 2.9623 36 1 1.2953 0.6344 -2.5392 37 1 3.3671 -0.9624 -3.6043 38 1 1.8465 -1.8833 -3.6941 39 1 0.7891 -0.0173 -4.9378 40 1 2.3094 0.9041 -4.8484 41 1 2.8608 -1.6139 -6.0032 42 1 2.6705 -0.8686 -10.4498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134420024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:34 Heat of formation + Delta-G solvation = -43.181385 kcal Electronic energy + Delta-G solvation = -21976.044384 eV Core-core repulsion = 18535.590027 eV Total energy + Delta-G solvation = -3440.454357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12340 -39.48402 -37.72147 -35.80999 -34.02322 -32.85421 -31.60146 -31.21296 -30.90041 -28.12399 -26.52994 -24.59169 -23.00978 -22.88732 -21.66740 -21.51326 -20.32952 -17.99702 -17.59891 -17.10928 -16.84029 -16.11248 -15.65968 -15.46755 -15.35311 -14.68550 -14.52670 -14.10301 -13.85216 -13.75839 -13.68479 -13.44109 -13.22217 -12.80062 -12.66639 -12.63425 -12.39837 -11.75936 -11.55645 -11.52137 -11.35095 -11.24378 -10.96168 -10.85926 -10.21000 -10.17166 -9.65738 -9.57041 -9.22182 -9.15132 -9.06076 -8.90694 -7.32151 -5.81558 -3.19016 0.93070 1.10040 2.60450 2.75401 3.37730 3.40624 3.41915 3.45781 3.86357 4.40662 4.45872 4.56314 4.57525 4.64715 4.68670 4.75322 4.82446 4.91405 4.96462 5.19997 5.25690 5.31264 5.32311 5.39981 5.43112 5.58784 5.63960 5.64034 5.72030 5.79783 5.94750 6.12338 6.19124 6.26815 6.34941 6.56390 6.57300 6.66110 6.77528 7.50722 7.91650 8.23190 8.36466 9.14094 9.86499 10.04770 11.36177 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.002282 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.261785 B =12264.637352 C =12807.894359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.087 0.913 4 O -0.349 6.349 5 C 0.100 3.900 6 C -0.089 4.089 7 C -0.098 4.098 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.095 4.095 12 C 0.511 3.489 13 O -0.520 6.520 14 N -0.721 5.721 15 C 0.109 3.891 16 C 0.149 3.851 17 N -0.752 5.752 18 C -0.249 4.249 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.885 3.115 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.276 1.276 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.363 0.637 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 2.991 32.042 32.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.105 0.895 4 O -0.268 6.268 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.116 4.116 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.113 4.113 12 C 0.295 3.705 13 O -0.394 6.394 14 N -0.375 5.375 15 C -0.015 4.015 16 C 0.021 3.979 17 N -0.399 5.399 18 C -0.379 4.379 19 H 0.109 0.891 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.202 1.202 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.196 0.804 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.509 2.178 31.932 32.042 hybrid contribution 0.406 -0.472 -0.134 0.637 sum -1.103 1.706 31.799 31.863 Atomic orbital electron populations 1.22241 0.93387 1.04033 1.03187 1.21908 0.95203 0.96293 0.85668 0.89514 1.88152 1.86506 1.33665 1.18428 1.21435 0.99719 0.91738 0.84786 1.19550 0.93717 1.00104 0.95572 1.21065 0.99462 0.96611 0.94445 1.21151 0.95787 0.99213 0.98162 1.21212 0.93466 0.99317 0.99295 1.21169 0.99879 0.97996 0.95123 1.21111 0.94952 0.98018 0.97266 1.20306 0.80222 0.85765 0.84193 1.90739 1.39253 1.23060 1.86379 1.45816 1.58086 1.28001 1.05575 1.21608 0.99766 0.96684 0.83452 1.20728 0.97549 0.94810 0.84801 1.42536 1.67571 1.27709 1.02082 1.19001 1.30377 1.07017 0.81485 0.89084 1.24681 1.00544 0.98679 0.95055 1.69699 1.50762 1.40464 0.96933 0.86540 0.80212 0.84656 0.77111 1.20899 1.21581 1.20159 0.90952 0.91271 0.90619 0.92186 0.92147 0.85914 0.85904 0.86016 0.85847 0.85832 0.76529 0.91305 0.91270 0.94852 0.94936 0.80361 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.48 37.16 0.35 -0.97 16 2 C 0.07 0.72 3.13 -27.88 -0.09 0.63 16 3 H 0.09 0.63 7.79 -51.93 -0.40 0.22 16 4 O -0.35 -4.26 9.51 -55.09 -0.52 -4.79 16 5 C 0.10 0.87 5.87 36.01 0.21 1.08 16 6 C -0.09 -0.86 5.51 -104.62 -0.58 -1.43 16 7 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 8 C -0.13 -0.98 10.05 -39.58 -0.40 -1.38 16 9 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 10 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 11 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 12 C 0.51 7.21 7.18 -10.98 -0.08 7.13 16 13 O -0.52 -9.94 16.51 -14.30 -0.24 -10.17 16 14 N -0.72 -9.15 5.52 -60.29 -0.33 -9.48 16 15 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 16 C 0.15 2.73 6.37 -4.04 -0.03 2.70 16 17 N -0.75 -17.83 5.41 -59.91 -0.32 -18.16 16 18 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 22 Si 0.88 22.25 27.74 -169.99 -4.71 17.53 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 28 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 29 H 0.06 0.44 8.03 -51.93 -0.42 0.03 16 30 H 0.06 0.39 7.81 -51.93 -0.41 -0.01 16 31 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.40 3.75 8.25 -40.82 -0.34 3.41 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.51 5.53 -40.82 -0.23 8.29 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -36.07 358.80 -8.82 -44.89 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.43 Total: 5.95 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.44 Total: -2.84 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.12 Total: -55.98 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.76 Total: -14.96 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.07 -8.82 -44.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134420024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.707 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds