Wall clock time and date at job start Tue Mar 31 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 5 5 C 1.42898 * 114.00186 * 269.99829 * 4 2 1 6 6 C 1.50703 * 109.47171 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99770 * 269.72826 * 6 5 4 8 8 C 1.38239 * 119.99901 * 179.76875 * 7 6 5 9 9 C 1.38240 * 119.99645 * 0.50240 * 8 7 6 10 10 C 1.38227 * 120.00205 * 359.74956 * 9 8 7 11 11 C 1.38232 * 119.99860 * 90.00268 * 6 5 4 12 12 C 1.50700 * 109.47191 * 239.99679 * 2 1 3 13 13 O 1.21284 * 120.00340 * 244.99786 * 12 2 1 14 14 N 1.34783 * 119.99696 * 65.00334 * 12 2 1 15 15 C 1.46499 * 119.99738 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.46744 * 179.97438 * 15 14 12 17 17 N 1.46506 * 109.46997 * 180.02562 * 16 15 14 18 18 C 1.36929 * 120.00058 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.38821 * 120.00165 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99852 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99729 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47553 * 89.99768 * 22 20 18 24 24 H 1.48496 * 109.47096 * 210.00028 * 22 20 18 25 25 H 1.48505 * 109.47070 * 329.99452 * 22 20 18 26 26 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 28 28 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 30 30 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 31 31 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.99843 * 180.23314 * 8 7 6 33 33 H 1.08002 * 119.99612 * 179.72381 * 9 8 7 34 34 H 1.07996 * 120.00251 * 179.97438 * 10 9 8 35 35 H 1.07998 * 120.00407 * 0.02562 * 11 6 5 36 36 H 0.96996 * 119.99850 * 359.97438 * 14 12 2 37 37 H 1.08994 * 109.47275 * 299.99798 * 15 14 12 38 38 H 1.09003 * 109.46911 * 59.99688 * 15 14 12 39 39 H 1.08994 * 109.47497 * 300.00185 * 16 15 14 40 40 H 1.08999 * 109.47096 * 60.00901 * 16 15 14 41 41 H 0.97007 * 119.99776 * 359.97438 * 17 16 15 42 42 H 0.97001 * 119.99615 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7015 -0.6282 3.4611 7 6 1.8030 -1.1954 4.3453 8 6 2.2627 -1.9434 5.4131 9 6 3.6213 -2.1155 5.6024 10 6 4.5198 -1.5440 4.7211 11 6 4.0599 -0.8002 3.6504 12 6 2.0324 -0.7105 -1.2304 13 8 2.6531 -1.7467 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2808 -0.8846 -3.6481 16 6 1.8754 -0.0947 -4.8942 17 7 2.3637 -0.7854 -6.0904 18 6 2.1194 -0.2610 -7.3315 19 1 1.5663 0.6616 -7.4286 20 6 2.5825 -0.9151 -8.4649 21 7 2.3472 -0.4113 -9.6578 22 14 3.5384 -2.5112 -8.2970 23 1 2.5955 -3.6581 -8.3235 24 1 4.4987 -2.6338 -9.4230 25 1 4.2811 -2.5104 -7.0110 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.9320 0.9514 2.0450 30 1 1.2538 0.6547 2.5589 31 1 0.7418 -1.0569 4.2002 32 1 1.5607 -2.3897 6.1018 33 1 3.9805 -2.6962 6.4391 34 1 5.5811 -1.6781 4.8692 35 1 4.7620 -0.3530 2.9623 36 1 1.2953 0.6344 -2.5392 37 1 3.3671 -0.9624 -3.6043 38 1 1.8465 -1.8833 -3.6941 39 1 0.7891 -0.0173 -4.9378 40 1 2.3094 0.9041 -4.8484 41 1 2.8608 -1.6139 -6.0032 42 1 2.6705 -0.8686 -10.4498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134420024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:34 Heat of formation + Delta-G solvation = -68.017531 kcal Electronic energy + Delta-G solvation = -21977.121360 eV Core-core repulsion = 18535.590027 eV Total energy + Delta-G solvation = -3441.531333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10712 -40.18836 -38.57111 -37.39106 -35.58446 -33.77769 -33.24575 -31.84646 -31.79977 -29.64326 -27.16236 -25.86170 -24.45639 -23.49385 -23.11263 -22.27457 -21.42758 -19.87736 -18.52604 -18.09429 -17.57834 -17.03722 -16.74620 -16.49271 -16.33466 -16.04991 -15.64560 -15.57718 -15.21945 -14.86876 -14.66459 -14.29304 -14.26499 -13.84483 -13.52036 -13.45029 -13.32447 -13.18273 -12.98626 -12.71869 -12.62395 -12.42055 -12.08980 -11.93432 -11.84566 -11.82508 -11.07316 -11.04057 -10.54338 -10.19500 -9.83567 -9.77652 -9.36555 -8.05555 -5.40599 0.30810 0.48607 1.39017 1.40262 1.47388 1.52848 1.79831 2.46191 2.68324 3.16666 3.26256 3.55418 3.80068 3.86339 3.88205 3.97776 3.99474 4.08921 4.14082 4.19872 4.27500 4.35063 4.39076 4.53811 4.62680 4.72548 4.75180 4.81838 4.99498 5.06475 5.09342 5.13840 5.22301 5.32201 5.53127 5.59545 5.64760 5.72335 6.03770 6.09825 6.17459 6.52436 7.02821 7.18579 7.77736 7.94788 9.15040 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.002282 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.261785 B =12264.637352 C =12807.894359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 H 0.122 0.878 4 O -0.383 6.383 5 C 0.097 3.903 6 C -0.110 4.110 7 C -0.110 4.110 8 C -0.132 4.132 9 C -0.122 4.122 10 C -0.135 4.135 11 C -0.117 4.117 12 C 0.507 3.493 13 O -0.577 6.577 14 N -0.706 5.706 15 C 0.123 3.877 16 C 0.151 3.849 17 N -0.760 5.760 18 C -0.236 4.236 19 H 0.066 0.934 20 C -0.061 4.061 21 N -0.979 5.979 22 Si 0.951 3.049 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.255 1.255 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.420 0.580 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.366 0.634 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 3.249 34.350 34.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.140 0.860 4 O -0.303 6.303 5 C 0.022 3.978 6 C -0.110 4.110 7 C -0.128 4.128 8 C -0.150 4.150 9 C -0.140 4.140 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.294 3.706 13 O -0.456 6.456 14 N -0.360 5.360 15 C -0.002 4.002 16 C 0.024 3.976 17 N -0.406 5.406 18 C -0.367 4.367 19 H 0.084 0.916 20 C -0.253 4.253 21 N -0.629 5.629 22 Si 0.778 3.222 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.180 1.180 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.257 0.743 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.199 0.801 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.966 2.485 34.298 34.444 hybrid contribution 0.492 -0.473 -0.766 1.026 sum -1.474 2.012 33.532 33.625 Atomic orbital electron populations 1.22251 0.91351 1.03382 1.05345 1.22015 0.96494 0.96844 0.83206 0.86032 1.88110 1.86930 1.35610 1.19605 1.21612 1.01284 0.91391 0.83536 1.19818 0.93998 1.00855 0.96315 1.21342 1.00186 0.96664 0.94587 1.21498 0.96383 0.98855 0.98288 1.21549 0.93546 0.99169 0.99732 1.21450 1.00976 0.97852 0.95037 1.21318 0.95337 0.98878 0.97980 1.21166 0.78961 0.85113 0.85387 1.90712 1.41922 1.25724 1.87199 1.45615 1.57679 1.28351 1.04393 1.21228 0.99071 0.96134 0.83792 1.20840 0.97978 0.94988 0.83752 1.42577 1.67775 1.28085 1.02194 1.19012 1.28576 1.05767 0.83337 0.91632 1.25480 1.02474 1.02535 0.94773 1.69861 1.52814 1.42405 0.97797 0.85467 0.78791 0.80233 0.77661 1.20433 1.22021 1.18009 0.92989 0.88803 0.88783 0.91130 0.89684 0.84531 0.83805 0.83880 0.84411 0.85816 0.74261 0.92385 0.92308 0.93712 0.93836 0.80132 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.08 1.34 3.13 29.85 0.09 1.44 16 3 H 0.12 1.31 7.79 -2.39 -0.02 1.29 16 4 O -0.38 -8.85 9.51 -129.99 -1.24 -10.09 16 5 C 0.10 1.52 5.87 71.24 0.42 1.94 16 6 C -0.11 -2.02 5.51 -19.87 -0.11 -2.13 16 7 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 8 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 9 C -0.12 -1.74 10.05 22.27 0.22 -1.51 16 10 C -0.14 -2.18 10.05 22.27 0.22 -1.95 16 11 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 12 C 0.51 13.65 7.18 87.66 0.63 14.27 16 13 O -0.58 -22.12 16.51 15.95 0.26 -21.85 16 14 N -0.71 -16.46 5.52 -463.06 -2.55 -19.01 16 15 C 0.12 3.76 5.79 86.38 0.50 4.26 16 16 C 0.15 5.26 6.37 86.38 0.55 5.81 16 17 N -0.76 -35.06 5.41 -343.45 -1.86 -36.92 16 18 C -0.24 -13.28 10.47 84.04 0.88 -12.40 16 19 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 20 C -0.06 -3.56 5.50 84.87 0.47 -3.09 16 21 N -0.98 -62.21 13.97 21.65 0.30 -61.91 16 22 Si 0.95 45.84 27.74 68.60 1.90 47.75 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.26 -11.31 6.52 99.48 0.65 -10.66 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 0.74 7.87 -2.39 -0.02 0.73 16 28 H 0.09 0.82 7.92 -2.39 -0.02 0.80 16 29 H 0.07 0.90 8.03 -2.39 -0.02 0.89 16 30 H 0.09 0.86 7.81 -2.39 -0.02 0.84 16 31 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.42 6.55 8.25 -92.71 -0.77 5.78 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.37 16.50 5.53 -92.70 -0.51 15.99 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -79.56 358.80 1.72 -77.84 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.32 Total: 24.13 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.21 Total: 0.06 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.11 Total: -117.84 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.97 Total: -31.94 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.75 kcal Total: -79.56 1.72 -77.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134420024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.821 kcal (2) G-P(sol) polarization free energy of solvation -79.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds