Wall clock time and date at job start Tue Mar 31 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32158 * 120.53703 * 2 1 4 4 C 1.31853 * 120.96911 * 179.97438 * 3 2 1 5 5 C 1.50698 * 118.95227 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47463 * 120.00423 * 5 4 3 7 7 C 1.53009 * 109.47103 * 240.00254 * 5 4 3 8 8 N 1.31884 * 122.09512 * 0.25951 * 4 3 2 9 9 C 1.32129 * 120.96305 * 359.47311 * 8 4 3 10 10 C 1.39920 * 120.53860 * 179.97438 * 2 1 3 11 11 C 1.47840 * 120.93960 * 0.02562 * 10 2 1 12 12 O 1.21553 * 119.99728 * 6.09382 * 11 10 2 13 13 N 1.34777 * 119.99881 * 186.09400 * 11 10 2 14 14 C 1.46500 * 119.99854 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47254 * 180.02562 * 14 13 11 16 16 N 1.46500 * 109.47254 * 180.02562 * 15 14 13 17 17 C 1.36936 * 119.99848 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00186 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99663 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99717 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47090 * 60.00599 * 21 19 17 23 23 H 1.48508 * 109.47023 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47492 * 300.00205 * 21 19 17 25 25 H 1.08992 * 109.47035 * 96.33068 * 1 2 3 26 26 H 1.08995 * 109.46724 * 216.33340 * 1 2 3 27 27 H 1.09000 * 109.46810 * 336.32677 * 1 2 3 28 28 H 1.09005 * 109.47301 * 359.97438 * 5 4 3 29 29 H 1.09003 * 109.46086 * 300.00124 * 6 5 4 30 30 H 1.08991 * 109.47471 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47001 * 59.99456 * 6 5 4 32 32 H 1.09000 * 109.46861 * 299.99479 * 7 5 4 33 33 H 1.08993 * 109.46939 * 59.99948 * 7 5 4 34 34 H 1.09001 * 109.46687 * 180.02562 * 7 5 4 35 35 H 1.08008 * 120.53860 * 180.25719 * 9 8 4 36 36 H 0.97001 * 120.00085 * 0.02562 * 13 11 10 37 37 H 1.09002 * 109.47144 * 300.00229 * 14 13 11 38 38 H 1.08998 * 109.46898 * 60.00024 * 14 13 11 39 39 H 1.09002 * 109.47123 * 300.00108 * 15 14 13 40 40 H 1.09002 * 109.46940 * 59.99720 * 15 14 13 41 41 H 0.97001 * 120.00061 * 0.02562 * 16 15 14 42 42 H 0.97005 * 119.99616 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 0.0005 5 6 4.2166 2.4723 -0.0001 6 6 5.0934 2.5769 1.2493 7 6 5.0943 2.5752 -1.2492 8 7 4.2062 0.0363 -0.0040 9 6 3.6165 -1.1461 0.0011 10 6 2.2180 -1.2051 0.0005 11 6 1.5121 -2.5041 0.0006 12 8 0.3022 -2.5383 -0.1117 13 7 2.2100 -3.6503 0.1250 14 6 1.5105 -4.9375 0.1256 15 6 2.5271 -6.0704 0.2799 16 7 1.8275 -7.3576 0.2798 17 6 2.5367 -8.5222 0.4061 18 1 3.6115 -8.4918 0.5062 19 6 1.8738 -9.7419 0.4066 20 7 0.5637 -9.7789 0.2852 21 14 2.8412 -11.3306 0.5782 22 1 3.5802 -11.3235 1.8663 23 1 1.9069 -12.4846 0.5494 24 1 3.8054 -11.4469 -0.5451 25 1 -0.3633 -0.1133 -1.0213 26 1 -0.3632 -0.8278 0.6089 27 1 -0.3633 0.9412 0.4126 28 1 3.4871 3.2823 -0.0014 29 1 4.4681 2.5036 2.1391 30 1 5.6135 3.5348 1.2491 31 1 5.8229 1.7670 1.2501 32 1 5.8238 1.7654 -1.2483 33 1 4.4697 2.5008 -2.1393 34 1 5.6151 3.5328 -1.2493 35 1 4.2040 -2.0524 0.0015 36 1 3.1755 -3.6230 0.2149 37 1 0.8050 -4.9672 0.9560 38 1 0.9711 -5.0582 -0.8139 39 1 3.2328 -6.0409 -0.5503 40 1 3.0661 -5.9494 1.2195 41 1 0.8621 -7.3850 0.1896 42 1 0.1005 -10.6312 0.2852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134860283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:36 Heat of formation + Delta-G solvation = 11.687728 kcal Electronic energy + Delta-G solvation = -22394.973486 eV Core-core repulsion = 18989.191183 eV Total energy + Delta-G solvation = -3405.782303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68755 -39.49493 -36.20974 -35.78096 -34.69202 -33.82897 -32.21600 -31.21283 -29.11564 -27.53406 -27.52793 -25.46407 -23.76895 -23.52331 -21.64303 -21.22378 -20.47579 -18.27560 -17.95306 -17.14605 -16.43906 -15.93704 -15.58490 -15.12962 -14.67266 -14.62882 -14.46483 -14.13991 -13.94786 -13.51371 -13.35634 -13.21244 -12.98472 -12.95105 -12.61632 -12.46187 -12.16119 -11.61038 -11.53536 -11.51700 -11.31209 -11.16263 -10.88135 -10.84207 -10.81560 -10.18429 -9.90193 -9.75741 -9.72026 -9.58123 -9.06890 -8.90851 -7.04055 -5.83101 -3.14259 0.15943 0.72925 2.68277 2.99103 3.40605 3.40976 3.45067 3.46306 3.46986 3.68833 4.06254 4.43271 4.54665 4.55878 4.63353 4.69036 4.73185 5.11090 5.21004 5.28695 5.40230 5.43889 5.45475 5.47710 5.50516 5.55961 5.62051 5.69877 5.79095 5.85056 5.88356 5.98563 6.04965 6.15107 6.37155 6.61026 6.62697 6.64560 7.38909 7.61970 7.72651 8.07745 8.34304 9.45668 9.99522 10.34153 11.39274 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028431 B = 0.002538 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.592126 B =11030.856809 C =11810.938134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.237 3.763 3 N -0.524 5.524 4 C 0.345 3.655 5 C -0.029 4.029 6 C -0.141 4.141 7 C -0.141 4.141 8 N -0.520 5.520 9 C 0.188 3.812 10 C -0.249 4.249 11 C 0.566 3.434 12 O -0.526 6.526 13 N -0.715 5.715 14 C 0.111 3.889 15 C 0.144 3.856 16 N -0.729 5.729 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.173 0.827 36 H 0.398 0.602 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.386 0.614 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 26.064 -0.536 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 N -0.238 5.238 4 C 0.079 3.921 5 C -0.050 4.050 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.234 5.234 9 C 0.021 3.979 10 C -0.257 4.257 11 C 0.351 3.649 12 O -0.403 6.403 13 N -0.366 5.366 14 C -0.012 4.012 15 C 0.016 3.984 16 N -0.374 5.374 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.190 0.810 36 H 0.233 0.767 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.220 0.780 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.005 26.745 -0.604 27.653 hybrid contribution 0.283 -1.880 0.077 1.903 sum 7.288 24.865 -0.526 25.917 Atomic orbital electron populations 1.21105 0.86419 1.04491 1.04869 1.22019 0.98167 0.86319 0.84398 1.68271 1.09452 1.29797 1.16279 1.23424 0.86538 0.94769 0.87410 1.20048 0.97078 0.90239 0.97599 1.21801 0.99571 1.02861 0.95691 1.21803 0.99564 1.02866 0.95696 1.68192 1.41170 0.98312 1.15710 1.23506 0.90877 0.96518 0.87018 1.21643 0.96255 0.96341 1.11466 1.17691 0.86948 0.83007 0.77261 1.90758 1.13275 1.86881 1.49430 1.45832 1.10874 1.06213 1.73690 1.21654 0.95951 0.80688 1.02900 1.20762 0.93530 0.85700 0.98444 1.42167 1.06874 0.99577 1.88802 1.19136 0.91285 0.84206 1.43077 0.91060 1.24788 0.95686 0.97806 1.02486 1.69659 1.06354 1.25199 1.56612 0.86218 0.78666 0.83025 0.77939 1.21159 1.21589 1.21164 0.89041 0.87344 0.90644 0.88439 0.92712 0.91419 0.91253 0.91253 0.92726 0.91422 0.80988 0.76747 0.90883 0.90865 0.95731 0.95728 0.77962 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.99 36.01 0.32 -0.90 16 2 C 0.24 2.88 6.86 -81.82 -0.56 2.32 16 3 N -0.52 -6.25 10.22 -6.68 -0.07 -6.31 16 4 C 0.35 3.73 6.34 -157.07 -1.00 2.74 16 5 C -0.03 -0.23 3.25 -91.77 -0.30 -0.53 16 6 C -0.14 -0.96 9.09 37.16 0.34 -0.62 16 7 C -0.14 -0.96 9.08 37.16 0.34 -0.63 16 8 N -0.52 -5.61 9.77 -10.39 -0.10 -5.71 16 9 C 0.19 1.91 10.80 -16.78 -0.18 1.73 16 10 C -0.25 -2.96 5.91 -104.69 -0.62 -3.58 16 11 C 0.57 7.72 7.73 -12.33 -0.10 7.63 16 12 O -0.53 -8.61 13.54 5.32 0.07 -8.54 16 13 N -0.71 -9.12 5.51 -61.25 -0.34 -9.45 16 14 C 0.11 1.79 5.79 -4.04 -0.02 1.77 16 15 C 0.14 2.69 6.37 -4.04 -0.03 2.67 16 16 N -0.73 -18.08 5.60 -59.91 -0.34 -18.42 16 17 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.11 1.33 5.96 -51.93 -0.31 1.02 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 32 H 0.07 0.52 8.00 -51.93 -0.42 0.10 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.17 1.22 6.58 -52.48 -0.35 0.87 16 36 H 0.40 3.91 6.65 -40.82 -0.27 3.63 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.39 10.14 7.67 -40.82 -0.31 9.83 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -32.55 352.80 -8.07 -40.61 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.26 Total: 7.39 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.05 Total: 5.27 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.12 Total: -67.09 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.55 -8.07 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134860283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.302 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds