Wall clock time and date at job start Tue Mar 31 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32158 * 120.53703 * 2 1 4 4 C 1.31853 * 120.96911 * 179.97438 * 3 2 1 5 5 C 1.50698 * 118.95227 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47463 * 120.00423 * 5 4 3 7 7 C 1.53009 * 109.47103 * 240.00254 * 5 4 3 8 8 N 1.31884 * 122.09512 * 0.25951 * 4 3 2 9 9 C 1.32129 * 120.96305 * 359.47311 * 8 4 3 10 10 C 1.39920 * 120.53860 * 179.97438 * 2 1 3 11 11 C 1.47840 * 120.93960 * 0.02562 * 10 2 1 12 12 O 1.21553 * 119.99728 * 6.09382 * 11 10 2 13 13 N 1.34777 * 119.99881 * 186.09400 * 11 10 2 14 14 C 1.46500 * 119.99854 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47254 * 180.02562 * 14 13 11 16 16 N 1.46500 * 109.47254 * 180.02562 * 15 14 13 17 17 C 1.36936 * 119.99848 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00186 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99663 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99717 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47090 * 60.00599 * 21 19 17 23 23 H 1.48508 * 109.47023 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47492 * 300.00205 * 21 19 17 25 25 H 1.08992 * 109.47035 * 96.33068 * 1 2 3 26 26 H 1.08995 * 109.46724 * 216.33340 * 1 2 3 27 27 H 1.09000 * 109.46810 * 336.32677 * 1 2 3 28 28 H 1.09005 * 109.47301 * 359.97438 * 5 4 3 29 29 H 1.09003 * 109.46086 * 300.00124 * 6 5 4 30 30 H 1.08991 * 109.47471 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47001 * 59.99456 * 6 5 4 32 32 H 1.09000 * 109.46861 * 299.99479 * 7 5 4 33 33 H 1.08993 * 109.46939 * 59.99948 * 7 5 4 34 34 H 1.09001 * 109.46687 * 180.02562 * 7 5 4 35 35 H 1.08008 * 120.53860 * 180.25719 * 9 8 4 36 36 H 0.97001 * 120.00085 * 0.02562 * 13 11 10 37 37 H 1.09002 * 109.47144 * 300.00229 * 14 13 11 38 38 H 1.08998 * 109.46898 * 60.00024 * 14 13 11 39 39 H 1.09002 * 109.47123 * 300.00108 * 15 14 13 40 40 H 1.09002 * 109.46940 * 59.99720 * 15 14 13 41 41 H 0.97001 * 120.00061 * 0.02562 * 16 15 14 42 42 H 0.97005 * 119.99616 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 0.0005 5 6 4.2166 2.4723 -0.0001 6 6 5.0934 2.5769 1.2493 7 6 5.0943 2.5752 -1.2492 8 7 4.2062 0.0363 -0.0040 9 6 3.6165 -1.1461 0.0011 10 6 2.2180 -1.2051 0.0005 11 6 1.5121 -2.5041 0.0006 12 8 0.3022 -2.5383 -0.1117 13 7 2.2100 -3.6503 0.1250 14 6 1.5105 -4.9375 0.1256 15 6 2.5271 -6.0704 0.2799 16 7 1.8275 -7.3576 0.2798 17 6 2.5367 -8.5222 0.4061 18 1 3.6115 -8.4918 0.5062 19 6 1.8738 -9.7419 0.4066 20 7 0.5637 -9.7789 0.2852 21 14 2.8412 -11.3306 0.5782 22 1 3.5802 -11.3235 1.8663 23 1 1.9069 -12.4846 0.5494 24 1 3.8054 -11.4469 -0.5451 25 1 -0.3633 -0.1133 -1.0213 26 1 -0.3632 -0.8278 0.6089 27 1 -0.3633 0.9412 0.4126 28 1 3.4871 3.2823 -0.0014 29 1 4.4681 2.5036 2.1391 30 1 5.6135 3.5348 1.2491 31 1 5.8229 1.7670 1.2501 32 1 5.8238 1.7654 -1.2483 33 1 4.4697 2.5008 -2.1393 34 1 5.6151 3.5328 -1.2493 35 1 4.2040 -2.0524 0.0015 36 1 3.1755 -3.6230 0.2149 37 1 0.8050 -4.9672 0.9560 38 1 0.9711 -5.0582 -0.8139 39 1 3.2328 -6.0409 -0.5503 40 1 3.0661 -5.9494 1.2195 41 1 0.8621 -7.3850 0.1896 42 1 0.1005 -10.6312 0.2852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134860283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:35 Heat of formation + Delta-G solvation = -10.918744 kcal Electronic energy + Delta-G solvation = -22395.953776 eV Core-core repulsion = 18989.191183 eV Total energy + Delta-G solvation = -3406.762593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56408 -40.59227 -37.45646 -36.71277 -35.88923 -35.13407 -33.38280 -32.76227 -30.26943 -28.91236 -28.05640 -26.45517 -25.41096 -24.46310 -23.16489 -22.26588 -21.30053 -19.42706 -19.17463 -18.69582 -17.23488 -17.00664 -16.89031 -16.41261 -16.21857 -15.61825 -15.27386 -15.21727 -15.13230 -14.98731 -14.69432 -14.31316 -14.20622 -13.67947 -13.47225 -13.11354 -13.05112 -12.96912 -12.95817 -12.63163 -12.53510 -12.25897 -12.16946 -12.11758 -11.88632 -11.85906 -11.69869 -10.97561 -10.90222 -10.67425 -10.44473 -10.16395 -9.05740 -7.96305 -5.27421 -0.72881 -0.12874 1.49130 1.52480 1.58487 1.65245 1.86912 2.57333 2.57891 2.65776 2.87571 3.23442 3.38017 3.50824 3.72919 3.84819 4.01593 4.03435 4.15911 4.17038 4.22952 4.39728 4.48954 4.59080 4.63199 4.72628 4.82389 4.85645 4.94384 4.94956 5.01571 5.11336 5.13799 5.23924 5.32642 5.33952 5.41711 5.49442 5.76887 6.24532 6.35080 6.87632 7.02017 7.31100 8.03236 8.25491 9.27009 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028431 B = 0.002538 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.592126 B =11030.856809 C =11810.938134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.227 3.773 3 N -0.536 5.536 4 C 0.340 3.660 5 C -0.031 4.031 6 C -0.136 4.136 7 C -0.136 4.136 8 N -0.525 5.525 9 C 0.197 3.803 10 C -0.261 4.261 11 C 0.569 3.431 12 O -0.557 6.557 13 N -0.702 5.702 14 C 0.129 3.871 15 C 0.147 3.853 16 N -0.747 5.747 17 C -0.248 4.248 18 H 0.083 0.917 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.978 3.022 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.276 1.276 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.204 0.796 36 H 0.415 0.585 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.375 0.625 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.666 27.227 -0.433 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.251 5.251 4 C 0.074 3.926 5 C -0.052 4.052 6 C -0.194 4.194 7 C -0.194 4.194 8 N -0.239 5.239 9 C 0.029 3.971 10 C -0.268 4.268 11 C 0.356 3.644 12 O -0.437 6.437 13 N -0.355 5.355 14 C 0.005 3.995 15 C 0.020 3.980 16 N -0.390 5.390 17 C -0.379 4.379 18 H 0.101 0.899 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.806 3.194 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.201 1.201 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.220 0.780 36 H 0.252 0.748 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.206 0.794 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.438 27.959 -0.496 29.513 hybrid contribution -0.400 -2.101 0.044 2.139 sum 9.038 25.858 -0.452 27.396 Atomic orbital electron populations 1.21032 0.86127 1.04545 1.04644 1.22221 0.98686 0.86722 0.84306 1.68340 1.10077 1.29587 1.17112 1.24077 0.86443 0.95991 0.86088 1.20225 0.97378 0.88882 0.98686 1.21773 0.99100 1.03859 0.94641 1.21776 0.99093 1.03867 0.94652 1.68313 1.41007 0.98482 1.16106 1.23986 0.90334 0.97500 0.85235 1.21466 0.96976 0.95092 1.13308 1.17910 0.86588 0.83565 0.76369 1.90753 1.14766 1.87345 1.50825 1.45566 1.11619 1.04806 1.73481 1.21219 0.95146 0.81433 1.01700 1.20869 0.93808 0.83955 0.99362 1.42403 1.06593 1.01204 1.88837 1.19603 0.92003 0.85201 1.41142 0.89896 1.25659 0.96630 1.01261 1.03369 1.69827 1.08027 1.25453 1.58720 0.85150 0.77211 0.78657 0.78342 1.20145 1.22400 1.20148 0.89028 0.88803 0.89318 0.87916 0.93479 0.89199 0.91893 0.91903 0.93532 0.89189 0.77968 0.74764 0.92199 0.92172 0.94288 0.94348 0.79374 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 8.99 71.24 0.64 -1.70 16 2 C 0.23 5.39 6.86 42.92 0.29 5.68 16 3 N -0.54 -12.32 10.22 -175.03 -1.79 -14.11 16 4 C 0.34 6.88 6.34 138.70 0.88 7.76 16 5 C -0.03 -0.44 3.25 -11.54 -0.04 -0.48 16 6 C -0.14 -1.56 9.09 71.98 0.65 -0.91 16 7 C -0.14 -1.58 9.08 71.99 0.65 -0.92 16 8 N -0.53 -10.39 9.77 -186.79 -1.82 -12.21 16 9 C 0.20 3.61 10.80 85.07 0.92 4.52 16 10 C -0.26 -5.92 5.91 -19.91 -0.12 -6.04 16 11 C 0.57 15.16 7.73 86.78 0.67 15.83 16 12 O -0.56 -18.44 13.54 -3.88 -0.05 -18.49 16 13 N -0.70 -16.89 5.51 -465.98 -2.57 -19.46 16 14 C 0.13 4.10 5.79 86.38 0.50 4.60 16 15 C 0.15 5.28 6.37 86.38 0.55 5.83 16 16 N -0.75 -36.84 5.60 -343.46 -1.92 -38.77 16 17 C -0.25 -13.43 9.99 84.03 0.84 -12.59 16 18 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 20 N -0.97 -59.09 13.06 21.65 0.28 -58.80 16 21 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 2.36 5.96 -2.39 -0.01 2.35 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.81 8.01 -2.39 -0.02 0.80 16 32 H 0.06 0.82 8.00 -2.39 -0.02 0.80 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.20 2.23 6.58 -2.91 -0.02 2.21 16 36 H 0.41 7.07 6.65 -92.71 -0.62 6.46 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.37 20.00 7.67 -92.71 -0.71 19.29 16 42 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -69.65 352.80 0.78 -68.87 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.29 Total: 28.09 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.91 Total: 17.71 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -7.82 Total: -143.35 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.65 0.78 -68.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134860283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.948 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds