Wall clock time and date at job start Tue Mar 31 2020 03:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31924 * 120.17131 * 2 1 4 4 N 1.28282 * 122.32181 * 180.27661 * 3 2 1 5 5 C 1.31916 * 122.51825 * 359.72631 * 4 3 2 6 6 C 1.38509 * 119.96537 * 359.97438 * 5 4 3 7 7 C 1.39726 * 120.17222 * 179.74318 * 2 1 3 8 8 C 1.48144 * 121.14129 * 0.02562 * 7 2 1 9 9 O 1.21511 * 120.00288 * 353.63814 * 8 7 2 10 10 N 1.34781 * 119.99596 * 173.64028 * 8 7 2 11 11 C 1.46500 * 119.99691 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47485 * 35.00074 * 11 10 8 13 13 C 1.53002 * 109.46963 * 274.99641 * 11 10 8 14 14 C 1.53003 * 109.46697 * 154.99932 * 11 10 8 15 15 C 1.52997 * 109.47264 * 294.99601 * 14 11 10 16 16 H 1.09004 * 109.46967 * 55.00498 * 15 14 11 17 17 C 1.53000 * 109.47323 * 175.00415 * 15 14 11 18 18 N 1.46504 * 109.47466 * 295.00754 * 15 14 11 19 19 C 1.36928 * 120.00522 * 155.00000 * 18 15 14 20 20 H 1.08000 * 119.99774 * 359.97438 * 19 18 15 21 21 C 1.38804 * 120.00533 * 179.97438 * 19 18 15 22 22 N 1.31622 * 120.00205 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99642 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47011 * 90.00515 * 23 21 19 25 25 H 1.48504 * 109.47169 * 210.00286 * 23 21 19 26 26 H 1.48496 * 109.47159 * 329.99930 * 23 21 19 27 27 H 1.09005 * 109.47237 * 263.90801 * 1 2 3 28 28 H 1.09000 * 109.47326 * 23.90364 * 1 2 3 29 29 H 1.09003 * 109.47208 * 143.91288 * 1 2 3 30 30 H 1.07998 * 120.01944 * 179.97438 * 5 4 3 31 31 H 1.08005 * 121.08131 * 180.02562 * 6 5 4 32 32 H 0.96995 * 120.00130 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.46868 * 60.00561 * 13 11 10 34 34 H 1.09002 * 109.46719 * 180.02562 * 13 11 10 35 35 H 1.08992 * 109.47381 * 299.99997 * 13 11 10 36 36 H 1.09008 * 109.46591 * 175.00080 * 14 11 10 37 37 H 1.08990 * 109.47294 * 55.00095 * 14 11 10 38 38 H 1.08999 * 109.46826 * 299.99976 * 17 15 14 39 39 H 1.08996 * 109.46900 * 59.99874 * 17 15 14 40 40 H 1.08997 * 109.47335 * 180.02562 * 17 15 14 41 41 H 0.97001 * 119.99614 * 334.99292 * 18 15 14 42 42 H 0.97004 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 -0.0052 5 6 4.2024 0.1037 -0.0057 6 6 3.6090 -1.1478 0.0002 7 6 2.2093 -1.2079 0.0054 8 6 1.4982 -2.5075 0.0107 9 8 0.2890 -2.5381 0.1269 10 7 2.1925 -3.6561 -0.1135 11 6 1.4893 -4.9413 -0.1077 12 1 0.5237 -4.8294 -0.6008 13 6 1.2747 -5.3987 1.3365 14 6 2.3253 -5.9832 -0.8538 15 6 2.4350 -5.5885 -2.3279 16 1 2.8327 -4.5765 -2.4044 17 6 3.3721 -6.5605 -3.0477 18 7 1.1084 -5.6400 -2.9474 19 6 0.8383 -4.8768 -4.0517 20 1 1.6032 -4.2366 -4.4658 21 6 -0.4184 -4.9260 -4.6390 22 7 -0.6781 -4.1919 -5.7002 23 14 -1.7411 -6.0339 -3.9231 24 1 -2.5192 -5.2823 -2.9059 25 1 -2.6497 -6.4846 -5.0078 26 1 -1.1058 -7.2157 -3.2867 27 1 -0.3634 -0.1091 1.0219 28 1 -0.3634 0.9395 -0.4164 29 1 -0.3634 -0.8305 -0.6053 30 1 5.2788 0.1913 -0.0106 31 1 4.2060 -2.0479 0.0003 32 1 3.1577 -3.6317 -0.2066 33 1 0.6792 -4.6564 1.8679 34 1 0.7519 -6.3551 1.3407 35 1 2.2403 -5.5106 1.8295 36 1 1.8457 -6.9588 -0.7736 37 1 3.3219 -6.0311 -0.4153 38 1 4.3591 -6.5221 -2.5868 39 1 2.9744 -7.5724 -2.9711 40 1 3.4507 -6.2791 -4.0978 41 1 0.4214 -6.2149 -2.5753 42 1 -1.5563 -4.2266 -6.1108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134869100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:48 Heat of formation + Delta-G solvation = 29.621533 kcal Electronic energy + Delta-G solvation = -23933.956239 eV Core-core repulsion = 20528.951604 eV Total energy + Delta-G solvation = -3405.004634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39395 -39.58701 -37.17636 -34.88188 -33.77121 -33.55478 -32.15762 -30.84909 -29.30017 -28.21902 -26.53765 -25.70894 -23.40116 -23.18821 -21.86549 -20.71923 -19.95335 -18.31502 -17.73890 -17.48308 -16.10474 -15.85406 -15.59290 -15.28067 -14.86135 -14.51535 -14.17877 -13.82486 -13.72113 -13.41460 -13.15309 -12.77631 -12.74185 -12.47661 -12.35400 -12.14042 -12.06029 -11.77806 -11.33077 -11.11459 -10.96470 -10.73358 -10.62288 -10.40453 -10.37005 -10.34339 -10.03512 -9.84958 -9.59564 -9.49358 -8.98755 -8.93918 -7.28641 -5.77132 -3.12880 0.20354 0.71529 2.76408 3.00508 3.36883 3.40701 3.46293 3.51530 3.87836 4.18645 4.21494 4.45709 4.58988 4.59245 4.88108 5.10179 5.12918 5.18457 5.26967 5.41414 5.46446 5.51876 5.65418 5.69174 5.73818 5.76079 5.83248 5.89912 6.01173 6.09052 6.12594 6.22229 6.32462 6.33737 6.44419 6.57141 6.71749 6.91136 7.44013 7.96888 8.16349 8.41320 8.52131 9.19430 9.92236 10.10925 11.41247 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.005220 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.938644 B = 5362.992477 C = 5950.051473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.128 3.872 3 N -0.247 5.247 4 N -0.226 5.226 5 C 0.025 3.975 6 C -0.083 4.083 7 C -0.127 4.127 8 C 0.563 3.437 9 O -0.510 6.510 10 N -0.706 5.706 11 C 0.143 3.857 12 H 0.103 0.897 13 C -0.162 4.162 14 C -0.136 4.136 15 C 0.176 3.824 16 H 0.053 0.947 17 C -0.166 4.166 18 N -0.745 5.745 19 C -0.241 4.241 20 H 0.087 0.913 21 C 0.007 3.993 22 N -0.933 5.933 23 Si 0.881 3.119 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.177 0.823 31 H 0.153 0.847 32 H 0.395 0.605 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.360 0.640 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 0.832 15.831 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.016 4.016 3 N -0.090 5.090 4 N -0.068 5.068 5 C -0.139 4.139 6 C -0.112 4.112 7 C -0.141 4.141 8 C 0.348 3.652 9 O -0.386 6.386 10 N -0.357 5.357 11 C 0.039 3.961 12 H 0.121 0.879 13 C -0.221 4.221 14 C -0.174 4.174 15 C 0.067 3.933 16 H 0.071 0.929 17 C -0.226 4.226 18 N -0.388 5.388 19 C -0.371 4.371 20 H 0.105 0.895 21 C -0.189 4.189 22 N -0.581 5.581 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.194 0.806 31 H 0.171 0.829 32 H 0.230 0.770 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.193 0.807 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.612 2.615 15.712 18.603 hybrid contribution -0.205 -2.437 0.191 2.453 sum 9.408 0.178 15.903 18.478 Atomic orbital electron populations 1.21024 0.86131 1.04999 1.04482 1.23186 0.99829 0.88497 0.90103 1.73089 1.01384 1.24143 1.10430 1.72848 0.99797 1.27878 1.06293 1.24249 1.02677 0.89300 0.97662 1.22645 0.94095 1.00371 0.94124 1.21180 0.94493 0.96011 1.02430 1.17769 0.87013 0.83060 0.77364 1.90771 1.13063 1.86624 1.48146 1.45844 1.10448 1.05806 1.73631 1.21095 0.98146 0.81375 0.95455 0.87859 1.22199 1.01590 1.01722 0.96573 1.22240 0.99642 0.98547 0.96998 1.20196 0.87047 0.97146 0.88939 0.92909 1.22426 0.97997 1.00375 1.01814 1.42768 1.09248 1.52570 1.34247 1.18976 0.97766 1.17795 1.02581 0.89532 1.24644 0.97290 0.99427 0.97535 1.69699 1.22147 1.43394 1.22849 0.86604 0.82835 0.80924 0.78493 1.20878 1.21836 1.20402 0.89503 0.90515 0.87201 0.80567 0.82910 0.77046 0.92267 0.91551 0.92809 0.90431 0.91436 0.94373 0.93567 0.92383 0.80730 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.97 36.01 0.32 -1.19 16 2 C 0.13 1.87 6.91 -82.00 -0.57 1.31 16 3 N -0.25 -3.76 11.42 33.81 0.39 -3.38 16 4 N -0.23 -3.11 11.48 30.53 0.35 -2.76 16 5 C 0.03 0.25 11.30 -17.42 -0.20 0.05 16 6 C -0.08 -0.80 9.68 -38.78 -0.38 -1.18 16 7 C -0.13 -1.68 5.92 -104.58 -0.62 -2.30 16 8 C 0.56 8.35 7.70 -12.19 -0.09 8.25 16 9 O -0.51 -9.21 13.20 5.36 0.07 -9.14 16 10 N -0.71 -8.76 4.41 -54.65 -0.24 -9.00 16 11 C 0.14 1.94 2.52 -67.93 -0.17 1.77 16 12 H 0.10 1.85 7.05 -51.93 -0.37 1.48 16 13 C -0.16 -1.82 9.48 37.16 0.35 -1.46 16 14 C -0.14 -1.72 4.29 -26.73 -0.11 -1.83 16 15 C 0.18 2.98 2.84 -67.93 -0.19 2.78 16 16 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 17 C -0.17 -2.62 9.49 37.16 0.35 -2.26 16 18 N -0.75 -16.51 4.30 -53.43 -0.23 -16.74 16 19 C -0.24 -6.61 10.41 -15.07 -0.16 -6.77 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16 23 Si 0.88 22.12 27.73 -169.99 -4.71 17.41 16 24 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.79 5.94 -51.93 -0.31 1.48 16 30 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.15 0.88 6.66 -52.48 -0.35 0.53 16 32 H 0.39 3.63 6.83 -40.82 -0.28 3.35 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.36 7.96 5.66 -40.82 -0.23 7.73 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -34.52 347.80 -6.08 -40.60 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.17 Total: 9.04 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.55 Total: -2.73 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 1.04 Total: -60.43 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.52 -6.08 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134869100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.225 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds