Wall clock time and date at job start Tue Mar 31 2020 03:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31924 * 120.17131 * 2 1 4 4 N 1.28282 * 122.32181 * 180.27661 * 3 2 1 5 5 C 1.31916 * 122.51825 * 359.72631 * 4 3 2 6 6 C 1.38509 * 119.96537 * 359.97438 * 5 4 3 7 7 C 1.39726 * 120.17222 * 179.74318 * 2 1 3 8 8 C 1.48144 * 121.14129 * 0.02562 * 7 2 1 9 9 O 1.21511 * 120.00288 * 353.63814 * 8 7 2 10 10 N 1.34781 * 119.99596 * 173.64028 * 8 7 2 11 11 C 1.46500 * 119.99691 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47485 * 35.00074 * 11 10 8 13 13 C 1.53002 * 109.46963 * 274.99641 * 11 10 8 14 14 C 1.53003 * 109.46697 * 154.99932 * 11 10 8 15 15 C 1.52997 * 109.47264 * 294.99601 * 14 11 10 16 16 H 1.09004 * 109.46967 * 55.00498 * 15 14 11 17 17 C 1.53000 * 109.47323 * 175.00415 * 15 14 11 18 18 N 1.46504 * 109.47466 * 295.00754 * 15 14 11 19 19 C 1.36928 * 120.00522 * 155.00000 * 18 15 14 20 20 H 1.08000 * 119.99774 * 359.97438 * 19 18 15 21 21 C 1.38804 * 120.00533 * 179.97438 * 19 18 15 22 22 N 1.31622 * 120.00205 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99642 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47011 * 90.00515 * 23 21 19 25 25 H 1.48504 * 109.47169 * 210.00286 * 23 21 19 26 26 H 1.48496 * 109.47159 * 329.99930 * 23 21 19 27 27 H 1.09005 * 109.47237 * 263.90801 * 1 2 3 28 28 H 1.09000 * 109.47326 * 23.90364 * 1 2 3 29 29 H 1.09003 * 109.47208 * 143.91288 * 1 2 3 30 30 H 1.07998 * 120.01944 * 179.97438 * 5 4 3 31 31 H 1.08005 * 121.08131 * 180.02562 * 6 5 4 32 32 H 0.96995 * 120.00130 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.46868 * 60.00561 * 13 11 10 34 34 H 1.09002 * 109.46719 * 180.02562 * 13 11 10 35 35 H 1.08992 * 109.47381 * 299.99997 * 13 11 10 36 36 H 1.09008 * 109.46591 * 175.00080 * 14 11 10 37 37 H 1.08990 * 109.47294 * 55.00095 * 14 11 10 38 38 H 1.08999 * 109.46826 * 299.99976 * 17 15 14 39 39 H 1.08996 * 109.46900 * 59.99874 * 17 15 14 40 40 H 1.08997 * 109.47335 * 180.02562 * 17 15 14 41 41 H 0.97001 * 119.99614 * 334.99292 * 18 15 14 42 42 H 0.97004 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 -0.0052 5 6 4.2024 0.1037 -0.0057 6 6 3.6090 -1.1478 0.0002 7 6 2.2093 -1.2079 0.0054 8 6 1.4982 -2.5075 0.0107 9 8 0.2890 -2.5381 0.1269 10 7 2.1925 -3.6561 -0.1135 11 6 1.4893 -4.9413 -0.1077 12 1 0.5237 -4.8294 -0.6008 13 6 1.2747 -5.3987 1.3365 14 6 2.3253 -5.9832 -0.8538 15 6 2.4350 -5.5885 -2.3279 16 1 2.8327 -4.5765 -2.4044 17 6 3.3721 -6.5605 -3.0477 18 7 1.1084 -5.6400 -2.9474 19 6 0.8383 -4.8768 -4.0517 20 1 1.6032 -4.2366 -4.4658 21 6 -0.4184 -4.9260 -4.6390 22 7 -0.6781 -4.1919 -5.7002 23 14 -1.7411 -6.0339 -3.9231 24 1 -2.5192 -5.2823 -2.9059 25 1 -2.6497 -6.4846 -5.0078 26 1 -1.1058 -7.2157 -3.2867 27 1 -0.3634 -0.1091 1.0219 28 1 -0.3634 0.9395 -0.4164 29 1 -0.3634 -0.8305 -0.6053 30 1 5.2788 0.1913 -0.0106 31 1 4.2060 -2.0479 0.0003 32 1 3.1577 -3.6317 -0.2066 33 1 0.6792 -4.6564 1.8679 34 1 0.7519 -6.3551 1.3407 35 1 2.2403 -5.5106 1.8295 36 1 1.8457 -6.9588 -0.7736 37 1 3.3219 -6.0311 -0.4153 38 1 4.3591 -6.5221 -2.5868 39 1 2.9744 -7.5724 -2.9711 40 1 3.4507 -6.2791 -4.0978 41 1 0.4214 -6.2149 -2.5753 42 1 -1.5563 -4.2266 -6.1108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134869100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:47 Heat of formation + Delta-G solvation = 3.809527 kcal Electronic energy + Delta-G solvation = -23935.075531 eV Core-core repulsion = 20528.951604 eV Total energy + Delta-G solvation = -3406.123927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.38138 -40.68896 -38.48923 -36.29882 -34.81463 -34.63308 -33.94413 -32.07404 -30.94913 -29.25969 -27.60457 -26.70795 -25.34193 -24.18169 -22.93411 -21.91642 -21.32701 -19.79836 -19.13537 -18.62439 -17.24234 -16.79204 -16.74461 -16.55173 -16.21742 -15.92608 -15.46045 -15.25152 -14.87717 -14.61315 -14.37464 -14.28011 -14.00463 -13.86129 -13.47818 -13.36428 -13.24025 -12.95972 -12.80983 -12.63051 -12.29015 -12.08682 -11.99852 -11.88518 -11.70422 -11.44324 -11.40662 -11.34835 -10.96970 -10.86868 -10.56150 -10.05616 -9.26667 -8.01284 -5.31476 -0.75251 -0.19816 1.33304 1.39433 1.44315 1.68819 1.98175 2.48298 2.52696 2.92218 3.28381 3.32208 3.33192 3.61728 3.65962 3.72959 3.86348 4.08956 4.22870 4.34819 4.43455 4.46754 4.53082 4.62213 4.66771 4.78545 4.83956 4.87636 4.91163 5.01188 5.07929 5.09930 5.18229 5.26835 5.34606 5.39518 5.55708 5.62020 5.80125 6.23528 6.44926 7.11744 7.13636 7.55778 7.90932 8.05795 9.20869 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.005220 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.938644 B = 5362.992477 C = 5950.051473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.108 3.892 3 N -0.277 5.277 4 N -0.256 5.256 5 C 0.036 3.964 6 C -0.058 4.058 7 C -0.148 4.148 8 C 0.557 3.443 9 O -0.554 6.554 10 N -0.692 5.692 11 C 0.142 3.858 12 H 0.054 0.946 13 C -0.153 4.153 14 C -0.121 4.121 15 C 0.165 3.835 16 H 0.045 0.955 17 C -0.158 4.158 18 N -0.749 5.749 19 C -0.212 4.212 20 H 0.053 0.947 21 C -0.068 4.068 22 N -0.988 5.988 23 Si 0.947 3.053 24 H -0.290 1.290 25 H -0.300 1.300 26 H -0.244 1.244 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.202 0.798 32 H 0.413 0.587 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.023 0.977 41 H 0.362 0.638 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.819 -1.502 18.284 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.037 4.037 3 N -0.119 5.119 4 N -0.097 5.097 5 C -0.128 4.128 6 C -0.088 4.088 7 C -0.162 4.162 8 C 0.343 3.657 9 O -0.433 6.433 10 N -0.344 5.344 11 C 0.037 3.963 12 H 0.072 0.928 13 C -0.211 4.211 14 C -0.160 4.160 15 C 0.058 3.942 16 H 0.063 0.937 17 C -0.218 4.218 18 N -0.392 5.392 19 C -0.344 4.344 20 H 0.071 0.929 21 C -0.259 4.259 22 N -0.639 5.639 23 Si 0.775 3.225 24 H -0.217 1.217 25 H -0.227 1.227 26 H -0.169 1.169 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.242 0.758 31 H 0.219 0.781 32 H 0.252 0.748 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.195 0.805 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.953 0.251 18.214 22.352 hybrid contribution -0.996 -1.676 -0.558 2.028 sum 11.957 -1.425 17.656 21.372 Atomic orbital electron populations 1.20870 0.86851 1.03872 1.04374 1.23214 0.99847 0.89380 0.91298 1.73032 1.02463 1.24537 1.11864 1.72745 0.99434 1.30006 1.07480 1.25029 1.04525 0.88270 0.94992 1.23182 0.92548 1.02248 0.90800 1.21156 0.96237 0.94622 1.04173 1.18077 0.86700 0.84105 0.76818 1.90755 1.15041 1.87276 1.50222 1.45717 1.11309 1.04885 1.72510 1.21019 0.96349 0.82037 0.96865 0.92800 1.22105 1.03080 1.01385 0.94531 1.22165 1.02222 0.98221 0.93348 1.20546 0.84530 0.97433 0.91720 0.93723 1.22296 0.99934 0.99755 0.99806 1.42832 1.11743 1.51713 1.32948 1.18934 0.96342 1.16181 1.02897 0.92928 1.25426 1.00030 1.01931 0.98524 1.69883 1.22488 1.46322 1.25253 0.85522 0.79699 0.80016 0.77247 1.21652 1.22686 1.16866 0.88867 0.90179 0.89957 0.75767 0.78145 0.74840 0.94190 0.90636 0.89714 0.89415 0.86631 0.90028 0.93162 0.95801 0.80504 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.08 8.97 71.24 0.64 -2.44 16 2 C 0.11 3.25 6.91 42.91 0.30 3.54 16 3 N -0.28 -8.54 11.42 -46.95 -0.54 -9.08 16 4 N -0.26 -6.73 11.48 -57.33 -0.66 -7.39 16 5 C 0.04 0.60 11.30 84.74 0.96 1.56 16 6 C -0.06 -0.92 9.68 22.79 0.22 -0.70 16 7 C -0.15 -3.80 5.92 -19.83 -0.12 -3.91 16 8 C 0.56 16.34 7.70 86.87 0.67 17.01 16 9 O -0.55 -20.92 13.20 -3.75 -0.05 -20.96 16 10 N -0.69 -15.42 4.41 -445.12 -1.96 -17.38 16 11 C 0.14 3.48 2.52 44.99 0.11 3.59 16 12 H 0.05 1.91 7.05 -2.39 -0.02 1.89 16 13 C -0.15 -2.92 9.48 71.98 0.68 -2.23 16 14 C -0.12 -2.51 4.29 30.59 0.13 -2.38 16 15 C 0.17 5.12 2.84 44.99 0.13 5.24 16 16 H 0.04 1.46 7.56 -2.38 -0.02 1.45 16 17 C -0.16 -4.43 9.49 71.98 0.68 -3.75 16 18 N -0.75 -32.44 4.30 -322.95 -1.39 -33.83 16 19 C -0.21 -11.85 10.41 84.03 0.87 -10.98 16 20 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.99 -64.79 13.97 21.65 0.30 -64.49 16 23 Si 0.95 46.67 27.73 68.60 1.90 48.57 16 24 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 26 H -0.24 -10.54 6.52 99.48 0.65 -9.89 16 27 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.96 5.94 -2.39 -0.01 2.94 16 30 H 0.23 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.20 1.10 6.66 -2.91 -0.02 1.08 16 32 H 0.41 5.70 6.83 -92.71 -0.63 5.06 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.36 15.39 5.66 -92.71 -0.52 14.87 16 42 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -82.86 347.80 3.18 -79.68 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.18 Total: 23.95 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.74 Total: 0.93 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -4.24 Total: -132.17 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.90 Total: 48.57 kcal Total: -82.86 3.18 -79.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134869100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.490 kcal (2) G-P(sol) polarization free energy of solvation -82.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds