Wall clock time and date at job start Tue Mar 31 2020 03:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31926 * 120.17188 * 2 1 4 4 N 1.28278 * 122.32096 * 179.97438 * 3 2 1 5 5 C 1.31912 * 122.52225 * 0.02562 * 4 3 2 6 6 C 1.38506 * 119.96886 * 359.97438 * 5 4 3 7 7 C 1.39723 * 120.17342 * 179.72467 * 2 1 3 8 8 C 1.48139 * 121.14271 * 0.02562 * 7 2 1 9 9 O 1.21516 * 120.00211 * 5.54579 * 8 7 2 10 10 N 1.34779 * 120.00186 * 185.54404 * 8 7 2 11 11 C 1.46496 * 120.00008 * 185.06137 * 10 8 7 12 12 H 1.08994 * 109.47285 * 31.81029 * 11 10 8 13 13 C 1.52999 * 109.47128 * 271.80789 * 11 10 8 14 14 C 1.53003 * 109.46923 * 151.81241 * 11 10 8 15 15 C 1.53003 * 109.47097 * 294.85774 * 14 11 10 16 16 H 1.09003 * 109.46582 * 54.23053 * 15 14 11 17 17 C 1.53000 * 109.47183 * 294.23232 * 15 14 11 18 18 N 1.46493 * 109.46912 * 174.22939 * 15 14 11 19 19 C 1.36937 * 120.00095 * 208.13257 * 18 15 14 20 20 H 1.08005 * 119.99570 * 4.98489 * 19 18 15 21 21 C 1.38812 * 120.00387 * 184.98094 * 19 18 15 22 22 N 1.31623 * 120.00189 * 184.63974 * 21 19 18 23 23 Si 1.86797 * 119.99856 * 4.64578 * 21 19 18 24 24 H 1.48498 * 109.47407 * 94.10744 * 23 21 19 25 25 H 1.48508 * 109.47021 * 214.10626 * 23 21 19 26 26 H 1.48503 * 109.46884 * 334.10008 * 23 21 19 27 27 H 1.08990 * 109.47016 * 96.75110 * 1 2 3 28 28 H 1.08995 * 109.47228 * 216.75633 * 1 2 3 29 29 H 1.09008 * 109.46994 * 336.75260 * 1 2 3 30 30 H 1.08004 * 120.01783 * 179.97438 * 5 4 3 31 31 H 1.07995 * 121.09277 * 179.97438 * 6 5 4 32 32 H 0.97005 * 119.99603 * 5.06399 * 10 8 7 33 33 H 1.09001 * 109.47604 * 300.00429 * 13 11 10 34 34 H 1.08997 * 109.47057 * 60.00338 * 13 11 10 35 35 H 1.09002 * 109.47392 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47370 * 54.86039 * 14 11 10 37 37 H 1.09003 * 109.46731 * 174.85839 * 14 11 10 38 38 H 1.09003 * 109.46869 * 299.99853 * 17 15 14 39 39 H 1.09004 * 109.47444 * 59.99634 * 17 15 14 40 40 H 1.08994 * 109.47199 * 180.02562 * 17 15 14 41 41 H 0.96997 * 120.00453 * 28.13737 * 18 15 14 42 42 H 0.96995 * 119.99783 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4519 1.1886 0.0005 5 6 4.2024 0.1038 0.0005 6 6 3.6091 -1.1478 0.0006 7 6 2.2093 -1.2079 0.0058 8 6 1.4983 -2.5075 0.0115 9 8 0.2878 -2.5383 -0.0905 10 7 2.1939 -3.6558 0.1298 11 6 1.5045 -4.9441 0.0242 12 1 0.6624 -4.8504 -0.6614 13 6 0.9943 -5.3640 1.4042 14 6 2.4768 -6.0011 -0.5034 15 6 2.8879 -5.6471 -1.9340 16 1 3.2795 -4.6301 -1.9583 17 6 1.6695 -5.7465 -2.8542 18 7 3.9216 -6.5796 -2.3899 19 6 4.8377 -6.1817 -3.3267 20 1 4.8488 -5.1578 -3.6702 21 6 5.7519 -7.0942 -3.8349 22 7 6.6901 -6.6925 -4.6661 23 14 5.6506 -8.8924 -3.3393 24 1 4.8536 -9.6391 -4.3456 25 1 7.0193 -9.4642 -3.2686 26 1 4.9985 -9.0034 -2.0098 27 1 -0.3633 -0.1208 -1.0204 28 1 -0.3633 -0.8233 0.6149 29 1 -0.3633 0.9443 0.4057 30 1 5.2788 0.1914 0.0005 31 1 4.2059 -2.0479 0.0002 32 1 3.1511 -3.6291 0.2848 33 1 1.8364 -5.4577 2.0899 34 1 0.3017 -4.6110 1.7801 35 1 0.4817 -6.3228 1.3258 36 1 3.3617 -6.0303 0.1323 37 1 1.9915 -6.9771 -0.4957 38 1 1.2779 -6.7635 -2.8298 39 1 0.9003 -5.0527 -2.5149 40 1 1.9625 -5.4948 -3.8733 41 1 3.9573 -7.4789 -2.0282 42 1 7.3287 -7.3303 -5.0215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134869106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:55 Heat of formation + Delta-G solvation = 5.857739 kcal Electronic energy + Delta-G solvation = -23477.939252 eV Core-core repulsion = 20071.904143 eV Total energy + Delta-G solvation = -3406.035110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40269 -40.74246 -38.50843 -36.40554 -34.82468 -34.67218 -33.91409 -32.18981 -30.72362 -29.22423 -27.62298 -26.75224 -25.48446 -24.16748 -22.96618 -22.00616 -21.30243 -19.77115 -19.12371 -18.60414 -17.15846 -16.82983 -16.76411 -16.59187 -16.11046 -16.06312 -15.55044 -15.24343 -14.87256 -14.67146 -14.44656 -14.28567 -13.99304 -13.81215 -13.53623 -13.39976 -13.20780 -12.92876 -12.82947 -12.69923 -12.23093 -12.08773 -12.02642 -11.83498 -11.60566 -11.47543 -11.42873 -11.36654 -10.98282 -10.86832 -10.56191 -10.12044 -9.29304 -7.99475 -5.32253 -0.78934 -0.20989 1.39004 1.44763 1.51328 1.64381 1.93194 2.49346 2.51278 2.93306 3.26843 3.29917 3.32885 3.45870 3.59529 3.72871 3.99776 4.14920 4.21608 4.23617 4.41962 4.45438 4.50665 4.58663 4.65102 4.69140 4.80301 4.89892 4.93635 4.97577 5.05036 5.07260 5.09947 5.26996 5.35358 5.39482 5.45652 5.59606 5.81682 6.24768 6.37777 7.02160 7.12791 7.54336 7.89373 8.08677 9.22094 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.004063 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.621549 B = 6890.176072 C = 7908.038794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.111 3.889 3 N -0.276 5.276 4 N -0.253 5.253 5 C 0.034 3.966 6 C -0.065 4.065 7 C -0.146 4.146 8 C 0.565 3.435 9 O -0.544 6.544 10 N -0.702 5.702 11 C 0.148 3.852 12 H 0.085 0.915 13 C -0.155 4.155 14 C -0.125 4.125 15 C 0.171 3.829 16 H 0.046 0.954 17 C -0.163 4.163 18 N -0.751 5.751 19 C -0.224 4.224 20 H 0.053 0.947 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.955 3.045 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.242 1.242 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.215 0.785 31 H 0.187 0.813 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.024 0.976 41 H 0.367 0.633 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 6.307 15.951 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.034 4.034 3 N -0.118 5.118 4 N -0.094 5.094 5 C -0.131 4.131 6 C -0.095 4.095 7 C -0.160 4.160 8 C 0.351 3.649 9 O -0.423 6.423 10 N -0.354 5.354 11 C 0.044 3.956 12 H 0.103 0.897 13 C -0.213 4.213 14 C -0.163 4.163 15 C 0.063 3.937 16 H 0.064 0.936 17 C -0.222 4.222 18 N -0.395 5.395 19 C -0.355 4.355 20 H 0.071 0.929 21 C -0.256 4.256 22 N -0.637 5.637 23 Si 0.784 3.216 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.167 1.167 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.231 0.769 31 H 0.204 0.796 32 H 0.248 0.752 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.201 0.799 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.286 8.064 15.730 20.972 hybrid contribution 1.040 -2.409 -0.487 2.669 sum -10.245 5.656 15.243 19.217 Atomic orbital electron populations 1.20930 0.85683 1.04601 1.04522 1.23365 1.00319 0.88815 0.90924 1.73028 1.02157 1.24863 1.11761 1.72777 0.99710 1.29579 1.07324 1.24899 1.04333 0.88525 0.95321 1.23122 0.93494 1.01779 0.91067 1.21151 0.95460 0.95203 1.04224 1.17897 0.86719 0.83583 0.76701 1.90731 1.14016 1.87140 1.50382 1.45969 1.12620 1.05111 1.71654 1.21067 0.95112 0.81058 0.98335 0.89742 1.22109 1.01665 1.02121 0.95433 1.22137 0.99764 0.99220 0.95196 1.20396 0.87579 0.93207 0.92490 0.93581 1.22382 0.98830 1.01344 0.99660 1.42868 1.34026 1.13719 1.48896 1.18989 1.07340 0.95252 1.13947 0.92860 1.25500 0.97919 1.02436 0.99769 1.69894 1.20382 1.35380 1.38015 0.85397 0.76412 0.80697 0.79143 1.21602 1.22647 1.16655 0.89578 0.88161 0.89759 0.76864 0.79625 0.75181 0.91288 0.92981 0.90152 0.90012 0.89052 0.92656 0.92019 0.95639 0.79863 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 8.97 71.24 0.64 -1.47 16 2 C 0.11 2.69 6.91 42.90 0.30 2.99 16 3 N -0.28 -7.46 11.42 -46.95 -0.54 -7.99 16 4 N -0.25 -6.35 11.48 -57.33 -0.66 -7.01 16 5 C 0.03 0.60 11.30 84.74 0.96 1.56 16 6 C -0.06 -1.09 9.67 22.79 0.22 -0.87 16 7 C -0.15 -3.15 5.92 -19.83 -0.12 -3.26 16 8 C 0.57 12.69 7.72 86.87 0.67 13.36 16 9 O -0.54 -14.65 13.18 -3.77 -0.05 -14.70 16 10 N -0.70 -13.12 4.36 -445.14 -1.94 -15.06 16 11 C 0.15 2.87 2.46 44.99 0.11 2.98 16 12 H 0.08 1.91 5.78 -2.39 -0.01 1.90 16 13 C -0.16 -2.43 9.51 71.98 0.68 -1.74 16 14 C -0.12 -2.74 4.44 30.60 0.14 -2.60 16 15 C 0.17 5.47 2.92 44.99 0.13 5.60 16 16 H 0.05 1.56 7.52 -2.39 -0.02 1.54 16 17 C -0.16 -5.16 9.29 71.98 0.67 -4.49 16 18 N -0.75 -31.26 4.87 -322.94 -1.57 -32.83 16 19 C -0.22 -11.94 10.41 84.03 0.87 -11.07 16 20 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 21 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 22 N -0.99 -61.34 13.97 21.65 0.30 -61.04 16 23 Si 0.96 43.25 28.00 68.60 1.92 45.17 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.24 -9.39 6.17 99.48 0.61 -8.77 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.10 2.20 5.93 -2.39 -0.01 2.18 16 29 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.19 1.93 6.69 -2.91 -0.02 1.91 16 32 H 0.41 6.08 6.90 -92.70 -0.64 5.44 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.70 6.49 -2.39 -0.02 1.69 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.37 14.57 5.57 -92.71 -0.52 14.05 16 42 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -72.42 345.28 3.00 -69.42 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.20 Total: 26.25 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.74 Total: -2.20 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -4.41 Total: -123.93 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.05 Total: -14.70 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.92 Total: 45.17 kcal Total: -72.42 3.00 -69.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134869106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.275 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds