Wall clock time and date at job start Tue Mar 31 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46831 * 31.86408 * 3 2 1 5 5 C 1.42899 * 113.99673 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47246 * 329.99989 * 5 4 3 7 7 C 1.53002 * 109.46931 * 90.00230 * 5 4 3 8 8 C 1.50702 * 109.47398 * 210.00304 * 5 4 3 9 9 O 1.21280 * 119.99662 * 353.62619 * 8 5 4 10 10 N 1.34774 * 120.00146 * 173.63240 * 8 5 4 11 11 C 1.47392 * 135.84965 * 184.29341 * 10 8 5 12 12 C 1.52080 * 87.40616 * 154.38891 * 11 10 8 13 13 C 1.47387 * 135.85700 * 4.66666 * 10 8 5 14 14 C 1.53510 * 117.21015 * 267.27998 * 12 11 10 15 15 C 1.54631 * 102.70544 * 262.93067 * 14 12 11 16 16 N 1.47147 * 107.37429 * 339.38615 * 15 14 12 17 17 C 1.36939 * 125.57876 * 179.03725 * 16 15 14 18 18 H 1.08001 * 120.00088 * 180.02562 * 17 16 15 19 19 C 1.38806 * 120.00328 * 0.03102 * 17 16 15 20 20 N 1.31616 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00473 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46553 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47048 * 119.99664 * 21 19 17 24 24 H 1.48497 * 109.47088 * 240.00104 * 21 19 17 25 25 C 1.47758 * 108.84302 * 359.08937 * 16 15 14 26 26 H 4.38443 * 5.44404 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47069 * 151.86362 * 3 2 1 28 28 H 1.09001 * 109.46877 * 271.86827 * 3 2 1 29 29 H 1.09001 * 109.46659 * 185.11372 * 7 5 4 30 30 H 1.08994 * 109.46995 * 305.10629 * 7 5 4 31 31 H 1.08997 * 109.47201 * 65.11282 * 7 5 4 32 32 H 1.08998 * 113.54402 * 268.99739 * 11 10 8 33 33 H 1.08999 * 113.54523 * 39.67821 * 11 10 8 34 34 H 1.09009 * 113.53740 * 320.32508 * 13 10 8 35 35 H 1.08997 * 113.55085 * 90.92572 * 13 10 8 36 36 H 1.09003 * 110.76879 * 21.23161 * 14 12 11 37 37 H 1.09001 * 110.76757 * 144.62897 * 14 12 11 38 38 H 1.09004 * 109.86859 * 98.82996 * 15 14 12 39 39 H 1.08999 * 109.86695 * 219.94035 * 15 14 12 40 40 H 0.96999 * 120.00615 * 180.02562 * 20 19 17 41 41 H 1.08995 * 110.39952 * 263.50556 * 25 16 15 42 42 H 1.08994 * 110.40781 * 141.07571 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.1434 -0.7113 5 6 4.5474 -1.2383 -0.7713 6 1 4.9793 -0.2376 -0.7548 7 6 5.0568 -2.0335 0.4325 8 6 4.9512 -1.9386 -2.0432 9 8 4.1042 -2.4210 -2.7649 10 7 6.2534 -2.0288 -2.3787 11 6 7.0155 -2.5429 -3.5307 12 6 8.1180 -1.5677 -3.1485 13 6 7.5352 -1.6625 -1.7503 14 6 8.0980 -0.1874 -3.8199 15 6 9.0987 -0.3617 -4.9858 16 7 9.9610 -1.5079 -4.6571 17 6 10.9668 -2.0001 -5.4453 18 1 11.5456 -2.8497 -5.1143 19 6 11.2425 -1.4071 -6.6697 20 7 10.5368 -0.3720 -7.0733 21 14 12.6150 -2.0782 -7.7447 22 1 13.2518 -3.2367 -7.0683 23 1 12.0544 -2.5129 -9.0492 24 1 13.6300 -1.0181 -7.9706 25 6 9.5632 -2.0415 -3.3379 26 1 -1.0498 -0.0002 -0.0003 27 1 3.0090 0.9071 -0.4846 28 1 3.0094 -0.0327 1.0271 29 1 6.1468 -2.0288 0.4361 30 1 4.6884 -1.5775 1.3514 31 1 4.6981 -3.0607 0.3675 32 1 7.3050 -3.5889 -3.4295 33 1 6.5519 -2.3233 -4.4925 34 1 7.5055 -0.7076 -1.2253 35 1 7.9698 -2.4613 -1.1494 36 1 7.1020 0.0446 -4.1970 37 1 8.4401 0.5834 -3.1292 38 1 8.5581 -0.5585 -5.9117 39 1 9.7039 0.5385 -5.0923 40 1 10.7292 0.0422 -7.9291 41 1 10.2024 -1.6339 -2.5548 42 1 9.6091 -3.1304 -3.3389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147531019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:09 Heat of formation + Delta-G solvation = 50.536132 kcal Electronic energy + Delta-G solvation = -23297.670676 eV Core-core repulsion = 19861.280215 eV Total energy + Delta-G solvation = -3436.390460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78743 -39.13391 -37.52826 -35.68227 -33.73450 -32.38302 -31.60127 -29.41973 -28.64975 -27.41134 -26.17812 -25.83200 -24.17587 -23.19838 -20.35292 -19.61584 -18.77142 -18.36727 -17.29436 -16.92739 -16.70431 -16.06460 -15.64714 -15.35278 -14.95935 -14.61143 -14.21376 -13.99918 -13.78705 -13.23037 -13.12219 -12.76836 -12.49548 -12.39206 -12.28908 -12.00186 -11.83756 -11.62463 -11.03810 -10.96326 -10.93732 -10.83700 -10.69637 -10.46295 -10.21365 -10.09159 -9.99525 -9.84862 -9.69956 -9.40791 -8.62549 -8.58278 -6.86535 -5.73533 -3.07441 2.07386 2.51914 2.62930 2.81663 3.38934 3.44409 3.46975 3.67843 4.15139 4.37537 4.43768 4.59538 4.61278 4.72672 4.85226 4.94816 5.06053 5.20903 5.29599 5.33047 5.42140 5.48988 5.50013 5.60501 5.63533 5.76641 5.80419 5.81567 5.97103 6.15486 6.17293 6.42849 6.47443 6.62304 6.65660 6.74281 7.28014 7.53346 7.59010 7.79274 7.80804 8.21195 8.22490 9.19111 9.79264 10.44223 11.38115 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037504 B = 0.002924 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.414458 B = 9574.486123 C = 9798.059486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.078 3.922 6 H 0.089 0.911 7 C -0.169 4.169 8 C 0.541 3.459 9 O -0.524 6.524 10 N -0.643 5.643 11 C 0.129 3.871 12 C -0.105 4.105 13 C 0.111 3.889 14 C -0.118 4.118 15 C 0.179 3.821 16 N -0.605 5.605 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.154 3.846 26 H 0.222 0.778 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 1.452 17.431 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.271 6.271 5 C 0.017 3.983 6 H 0.107 0.893 7 C -0.227 4.227 8 C 0.329 3.671 9 O -0.399 6.399 10 N -0.380 5.380 11 C 0.008 3.992 12 C -0.107 4.107 13 C -0.012 4.012 14 C -0.156 4.156 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.027 3.973 26 H 0.239 0.761 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.020 1.120 16.798 20.686 hybrid contribution 0.678 -0.106 -0.463 0.828 sum -11.341 1.015 16.335 19.912 Atomic orbital electron populations 1.24963 0.95879 0.98307 0.99833 1.22434 0.93800 1.01814 1.01108 1.19186 0.85066 0.89411 0.96934 1.88114 1.19130 1.44196 1.75644 1.21819 0.82496 1.00097 0.93906 0.89327 1.22229 1.01988 1.01709 0.96782 1.19752 0.80573 0.80351 0.86441 1.90733 1.49140 1.47376 1.52661 1.49770 1.03337 1.61605 1.23268 1.22814 0.88010 0.98093 0.90287 1.22199 0.96422 0.97898 0.94182 1.22905 0.80848 1.00602 0.96873 1.22475 1.00632 0.93239 0.99243 1.21225 0.89799 0.90909 0.92630 1.44547 1.38249 1.33993 1.16358 1.19084 1.07617 1.11040 0.97892 0.90321 1.24806 0.99627 0.98140 0.97874 1.69964 1.41676 1.23801 1.21431 0.86049 0.81291 0.77960 0.80476 1.20499 1.21769 1.21794 1.21139 0.89670 0.96868 0.89641 0.76107 0.90522 0.90594 0.90549 0.91131 0.91132 0.89662 0.90108 0.90431 0.89397 0.92032 0.91802 0.93493 0.93760 0.93773 0.95548 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 19.25 29.55 0.57 -1.04 16 2 C -0.19 -2.10 13.73 -37.12 -0.51 -2.61 16 3 C 0.17 1.63 6.22 34.37 0.21 1.85 16 4 O -0.35 -4.71 9.49 -55.06 -0.52 -5.23 16 5 C 0.08 0.89 2.98 -27.88 -0.08 0.80 16 6 H 0.09 0.78 7.79 -51.93 -0.40 0.38 16 7 C -0.17 -1.45 9.42 37.16 0.35 -1.10 16 8 C 0.54 8.40 7.41 -10.99 -0.08 8.32 16 9 O -0.52 -10.65 17.29 -14.27 -0.25 -10.90 16 10 N -0.64 -9.07 3.69 -185.74 -0.68 -9.75 16 11 C 0.13 2.04 7.98 -7.33 -0.06 1.98 16 12 C -0.11 -1.62 1.06 -155.22 -0.16 -1.78 16 13 C 0.11 1.26 6.57 -7.49 -0.05 1.21 16 14 C -0.12 -2.03 6.40 -25.61 -0.16 -2.19 16 15 C 0.18 4.14 5.39 -2.83 -0.02 4.13 16 16 N -0.60 -14.57 3.41 -170.54 -0.58 -15.15 16 17 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -26.59 10.30 55.49 0.57 -26.02 16 21 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.15 2.81 6.70 -3.22 -0.02 2.79 16 26 H 0.22 1.18 7.80 -54.10 -0.42 0.76 16 27 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.08 0.52 7.78 -51.93 -0.40 0.11 16 29 H 0.08 0.55 6.91 -51.93 -0.36 0.19 16 30 H 0.07 0.46 7.78 -51.93 -0.40 0.06 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.25 8.06 -51.93 -0.42 0.84 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.08 0.72 8.13 -51.92 -0.42 0.30 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 39 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -34.51 354.06 -7.94 -42.45 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.52 Total: -3.19 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.26 Total: 5.75 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.69 Total: -50.92 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.77 Total: -16.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.51 -7.94 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147531019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.982 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds