Wall clock time and date at job start Tue Mar 31 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46831 * 31.86408 * 3 2 1 5 5 C 1.42899 * 113.99673 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47246 * 329.99989 * 5 4 3 7 7 C 1.53002 * 109.46931 * 90.00230 * 5 4 3 8 8 C 1.50702 * 109.47398 * 210.00304 * 5 4 3 9 9 O 1.21280 * 119.99662 * 353.62619 * 8 5 4 10 10 N 1.34774 * 120.00146 * 173.63240 * 8 5 4 11 11 C 1.47392 * 135.84965 * 184.29341 * 10 8 5 12 12 C 1.52080 * 87.40616 * 154.38891 * 11 10 8 13 13 C 1.47387 * 135.85700 * 4.66666 * 10 8 5 14 14 C 1.53510 * 117.21015 * 267.27998 * 12 11 10 15 15 C 1.54631 * 102.70544 * 262.93067 * 14 12 11 16 16 N 1.47147 * 107.37429 * 339.38615 * 15 14 12 17 17 C 1.36939 * 125.57876 * 179.03725 * 16 15 14 18 18 H 1.08001 * 120.00088 * 180.02562 * 17 16 15 19 19 C 1.38806 * 120.00328 * 0.03102 * 17 16 15 20 20 N 1.31616 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00473 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46553 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47048 * 119.99664 * 21 19 17 24 24 H 1.48497 * 109.47088 * 240.00104 * 21 19 17 25 25 C 1.47758 * 108.84302 * 359.08937 * 16 15 14 26 26 H 4.38443 * 5.44404 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47069 * 151.86362 * 3 2 1 28 28 H 1.09001 * 109.46877 * 271.86827 * 3 2 1 29 29 H 1.09001 * 109.46659 * 185.11372 * 7 5 4 30 30 H 1.08994 * 109.46995 * 305.10629 * 7 5 4 31 31 H 1.08997 * 109.47201 * 65.11282 * 7 5 4 32 32 H 1.08998 * 113.54402 * 268.99739 * 11 10 8 33 33 H 1.08999 * 113.54523 * 39.67821 * 11 10 8 34 34 H 1.09009 * 113.53740 * 320.32508 * 13 10 8 35 35 H 1.08997 * 113.55085 * 90.92572 * 13 10 8 36 36 H 1.09003 * 110.76879 * 21.23161 * 14 12 11 37 37 H 1.09001 * 110.76757 * 144.62897 * 14 12 11 38 38 H 1.09004 * 109.86859 * 98.82996 * 15 14 12 39 39 H 1.08999 * 109.86695 * 219.94035 * 15 14 12 40 40 H 0.96999 * 120.00615 * 180.02562 * 20 19 17 41 41 H 1.08995 * 110.39952 * 263.50556 * 25 16 15 42 42 H 1.08994 * 110.40781 * 141.07571 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.1434 -0.7113 5 6 4.5474 -1.2383 -0.7713 6 1 4.9793 -0.2376 -0.7548 7 6 5.0568 -2.0335 0.4325 8 6 4.9512 -1.9386 -2.0432 9 8 4.1042 -2.4210 -2.7649 10 7 6.2534 -2.0288 -2.3787 11 6 7.0155 -2.5429 -3.5307 12 6 8.1180 -1.5677 -3.1485 13 6 7.5352 -1.6625 -1.7503 14 6 8.0980 -0.1874 -3.8199 15 6 9.0987 -0.3617 -4.9858 16 7 9.9610 -1.5079 -4.6571 17 6 10.9668 -2.0001 -5.4453 18 1 11.5456 -2.8497 -5.1143 19 6 11.2425 -1.4071 -6.6697 20 7 10.5368 -0.3720 -7.0733 21 14 12.6150 -2.0782 -7.7447 22 1 13.2518 -3.2367 -7.0683 23 1 12.0544 -2.5129 -9.0492 24 1 13.6300 -1.0181 -7.9706 25 6 9.5632 -2.0415 -3.3379 26 1 -1.0498 -0.0002 -0.0003 27 1 3.0090 0.9071 -0.4846 28 1 3.0094 -0.0327 1.0271 29 1 6.1468 -2.0288 0.4361 30 1 4.6884 -1.5775 1.3514 31 1 4.6981 -3.0607 0.3675 32 1 7.3050 -3.5889 -3.4295 33 1 6.5519 -2.3233 -4.4925 34 1 7.5055 -0.7076 -1.2253 35 1 7.9698 -2.4613 -1.1494 36 1 7.1020 0.0446 -4.1970 37 1 8.4401 0.5834 -3.1292 38 1 8.5581 -0.5585 -5.9117 39 1 9.7039 0.5385 -5.0923 40 1 10.7292 0.0422 -7.9291 41 1 10.2024 -1.6339 -2.5548 42 1 9.6091 -3.1304 -3.3389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147531019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:09 Heat of formation + Delta-G solvation = 27.708707 kcal Electronic energy + Delta-G solvation = -23298.660547 eV Core-core repulsion = 19861.280215 eV Total energy + Delta-G solvation = -3437.380332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98134 -40.19290 -38.63428 -37.28589 -34.49319 -34.09081 -32.61740 -31.04779 -30.06290 -28.09311 -27.53394 -27.12475 -25.69455 -24.29560 -22.13608 -20.69470 -19.78734 -19.46474 -18.59712 -18.15154 -17.88777 -17.05474 -16.79324 -16.59711 -16.36015 -16.07329 -15.58260 -15.20351 -15.04482 -14.29653 -14.08479 -13.93748 -13.73413 -13.66271 -13.47650 -13.29940 -13.14646 -12.85447 -12.80749 -12.44135 -12.24559 -11.97164 -11.89305 -11.79390 -11.73224 -11.63746 -11.56644 -11.18514 -10.87416 -10.67972 -10.45703 -9.75505 -8.84026 -7.81461 -5.15829 1.25634 1.47974 1.48696 1.51054 1.58671 1.80593 1.83582 2.52181 2.93672 3.26919 3.33563 3.43117 3.60166 3.66189 3.85014 3.90597 4.04507 4.10967 4.22583 4.25289 4.36851 4.46046 4.58264 4.61390 4.71318 4.73179 4.73306 4.84280 4.89228 4.98156 5.00579 5.06250 5.20731 5.21048 5.26269 5.51275 5.70357 5.81369 6.00865 6.23550 6.58539 6.69980 7.06600 7.14124 7.82654 8.46031 9.29198 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037504 B = 0.002924 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.414458 B = 9574.486123 C = 9798.059486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.239 4.239 3 C 0.164 3.836 4 O -0.390 6.390 5 C 0.083 3.917 6 H 0.122 0.878 7 C -0.163 4.163 8 C 0.532 3.468 9 O -0.588 6.588 10 N -0.639 5.639 11 C 0.119 3.881 12 C -0.099 4.099 13 C 0.129 3.871 14 C -0.101 4.101 15 C 0.187 3.813 16 N -0.628 5.628 17 C -0.231 4.231 18 H 0.088 0.912 19 C -0.072 4.072 20 N -0.954 5.954 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.299 1.299 24 H -0.294 1.294 25 C 0.151 3.849 26 H 0.252 0.748 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.060 0.940 37 H 0.093 0.907 38 H -0.001 1.001 39 H 0.008 0.992 40 H 0.244 0.756 41 H 0.050 0.950 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 1.416 21.058 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.239 4.239 3 C 0.089 3.911 4 O -0.310 6.310 5 C 0.022 3.978 6 H 0.140 0.860 7 C -0.220 4.220 8 C 0.322 3.678 9 O -0.467 6.467 10 N -0.374 5.374 11 C -0.004 4.004 12 C -0.101 4.101 13 C 0.008 3.992 14 C -0.139 4.139 15 C 0.061 3.939 16 N -0.355 5.355 17 C -0.361 4.361 18 H 0.106 0.894 19 C -0.265 4.265 20 N -0.604 5.604 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.226 1.226 24 H -0.222 1.222 25 C 0.026 3.974 26 H 0.268 0.732 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.018 0.982 39 H 0.026 0.974 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.560 1.073 20.496 23.556 hybrid contribution 0.496 -0.121 -1.605 1.685 sum -11.063 0.952 18.891 21.913 Atomic orbital electron populations 1.25870 0.96936 0.96899 0.98608 1.23182 0.95133 1.03175 1.02393 1.19485 0.84531 0.88725 0.98367 1.88063 1.20352 1.45921 1.76660 1.21953 0.82106 1.01507 0.92217 0.86047 1.22241 1.03249 1.00250 0.96290 1.20725 0.80102 0.79653 0.87278 1.90698 1.50887 1.50185 1.54970 1.49783 1.04002 1.60799 1.22822 1.22838 0.88635 0.99047 0.89846 1.22026 0.94541 0.95999 0.97519 1.23062 0.77925 1.03815 0.94390 1.22267 0.98593 0.95514 0.97517 1.20922 0.90034 0.89375 0.93518 1.44864 1.37791 1.34435 1.18378 1.19519 1.07772 1.10651 0.98124 0.89436 1.25634 1.02263 0.98938 0.99616 1.70200 1.43462 1.25379 1.21396 0.85053 0.78559 0.77651 0.78367 1.18597 1.22614 1.22156 1.21370 0.91474 0.97346 0.87234 0.73164 0.89191 0.87560 0.88327 0.88599 0.93091 0.88594 0.93514 0.86624 0.85947 0.92170 0.88901 0.98232 0.97371 0.94715 0.93222 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 19.25 74.32 1.43 -1.44 16 2 C -0.24 -4.97 13.73 31.13 0.43 -4.54 16 3 C 0.16 2.80 6.22 70.18 0.44 3.24 16 4 O -0.39 -9.87 9.49 -130.02 -1.23 -11.11 16 5 C 0.08 1.63 2.98 29.85 0.09 1.72 16 6 H 0.12 1.56 7.79 -2.39 -0.02 1.54 16 7 C -0.16 -2.11 9.42 71.98 0.68 -1.43 16 8 C 0.53 15.83 7.41 87.66 0.65 16.48 16 9 O -0.59 -24.48 17.29 15.93 0.28 -24.21 16 10 N -0.64 -16.48 3.69 -859.95 -3.17 -19.65 16 11 C 0.12 3.65 7.98 83.76 0.67 4.32 16 12 C -0.10 -2.80 1.06 -52.62 -0.06 -2.85 16 13 C 0.13 2.27 6.57 83.66 0.55 2.82 16 14 C -0.10 -3.35 6.40 31.32 0.20 -3.15 16 15 C 0.19 8.93 5.39 86.81 0.47 9.40 16 16 N -0.63 -30.32 3.41 -693.46 -2.36 -32.69 16 17 C -0.23 -12.48 10.28 84.03 0.86 -11.62 16 18 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 20 N -0.95 -57.66 10.30 21.65 0.22 -57.44 16 21 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.15 5.15 6.70 86.22 0.58 5.72 16 26 H 0.25 2.15 7.80 -4.43 -0.03 2.11 16 27 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.11 1.08 7.78 -2.39 -0.02 1.07 16 29 H 0.10 0.82 6.91 -2.39 -0.02 0.81 16 30 H 0.10 0.78 7.78 -2.39 -0.02 0.77 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 2.72 8.06 -2.39 -0.02 2.70 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.12 1.30 8.13 -2.38 -0.02 1.28 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.00 -0.03 7.38 -2.38 -0.02 -0.05 16 39 H 0.01 0.44 7.49 -2.39 -0.02 0.42 16 40 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.68 8.00 -2.39 -0.02 1.66 16 Total: -1.00 -82.17 354.06 4.20 -77.97 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 0.99 Total: 4.52 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 7.45 Total: 15.06 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -5.31 Total: -109.77 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.96 Total: -35.31 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -82.17 4.20 -77.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147531019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.676 kcal (2) G-P(sol) polarization free energy of solvation -82.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds